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1.4.0-DEV-81899bf99e.log
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1.4.0-DEV-81899bf99e.log
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Julia Version 1.4.0-DEV.634
Commit 81899bf99e (2019-12-18 10:13 UTC)
Platform Info:
OS: Linux (x86_64-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-8.0.1 (ORCJIT, skylake)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
Resolving package versions...
Installed PDMats ────────────────────── v0.9.10
Installed OpenSpecFun_jll ───────────── v0.5.3+1
Installed OrderedCollections ────────── v1.1.0
Installed CancerSeqSim ──────────────── v0.2.0
Installed Polynomials ───────────────── v0.6.0
Installed StatsBase ─────────────────── v0.32.0
Installed GLM ───────────────────────── v1.3.5
Installed DataFrames ────────────────── v0.20.0
Installed Tables ────────────────────── v0.2.11
Installed Missings ──────────────────── v0.4.3
Installed RecipesBase ───────────────── v0.7.0
Installed IteratorInterfaceExtensions ─ v1.0.0
Installed Rmath ─────────────────────── v0.6.0
Installed ShiftedArrays ─────────────── v1.0.0
Installed HypothesisTests ───────────── v0.8.0
Installed InvertedIndices ───────────── v1.0.0
Installed StatsFuns ─────────────────── v0.9.3
Installed Reexport ──────────────────── v0.2.0
Installed Combinatorics ─────────────── v0.7.0
Installed DataAPI ───────────────────── v1.1.0
Installed Parsers ───────────────────── v0.3.10
Installed QuadGK ────────────────────── v2.3.1
Installed StatsModels ───────────────── v0.6.7
Installed FillArrays ────────────────── v0.8.2
Installed BinaryProvider ────────────── v0.5.8
Installed SortingAlgorithms ─────────── v0.3.1
Installed Arpack_jll ────────────────── v3.5.0+2
Installed DataStructures ────────────── v0.17.6
Installed Compat ────────────────────── v3.0.0
Installed Arpack ────────────────────── v0.4.0
Installed OpenBLAS_jll ──────────────── v0.3.7+1
Installed CategoricalArrays ─────────── v0.7.4
Installed Distributions ─────────────── v0.21.11
Installed Roots ─────────────────────── v0.8.4
Installed DataValueInterfaces ───────── v1.0.0
Installed PooledArrays ──────────────── v0.5.2
Installed TableTraits ───────────────── v1.0.0
Installed ProgressMeter ─────────────── v0.9.0
Installed SpecialFunctions ──────────── v0.9.0
Installed JSON ──────────────────────── v0.21.0
Updating `~/.julia/environments/v1.4/Project.toml`
[c7b3ebfe] + CancerSeqSim v0.2.0
Updating `~/.julia/environments/v1.4/Manifest.toml`
[7d9fca2a] + Arpack v0.4.0
[68821587] + Arpack_jll v3.5.0+2
[b99e7846] + BinaryProvider v0.5.8
[c7b3ebfe] + CancerSeqSim v0.2.0
[324d7699] + CategoricalArrays v0.7.4
[861a8166] + Combinatorics v0.7.0
[34da2185] + Compat v3.0.0
[9a962f9c] + DataAPI v1.1.0
[a93c6f00] + DataFrames v0.20.0
[864edb3b] + DataStructures v0.17.6
[e2d170a0] + DataValueInterfaces v1.0.0
[31c24e10] + Distributions v0.21.11
[1a297f60] + FillArrays v0.8.2
[38e38edf] + GLM v1.3.5
[09f84164] + HypothesisTests v0.8.0
[41ab1584] + InvertedIndices v1.0.0
[82899510] + IteratorInterfaceExtensions v1.0.0
[682c06a0] + JSON v0.21.0
[e1d29d7a] + Missings v0.4.3
[4536629a] + OpenBLAS_jll v0.3.7+1
[efe28fd5] + OpenSpecFun_jll v0.5.3+1
[bac558e1] + OrderedCollections v1.1.0
[90014a1f] + PDMats v0.9.10
[69de0a69] + Parsers v0.3.10
[f27b6e38] + Polynomials v0.6.0
[2dfb63ee] + PooledArrays v0.5.2
[92933f4c] + ProgressMeter v0.9.0
[1fd47b50] + QuadGK v2.3.1
[3cdcf5f2] + RecipesBase v0.7.0
[189a3867] + Reexport v0.2.0
[79098fc4] + Rmath v0.6.0
[f2b01f46] + Roots v0.8.4
[1277b4bf] + ShiftedArrays v1.0.0
[a2af1166] + SortingAlgorithms v0.3.1
[276daf66] + SpecialFunctions v0.9.0
[2913bbd2] + StatsBase v0.32.0
[4c63d2b9] + StatsFuns v0.9.3
[3eaba693] + StatsModels v0.6.7
[3783bdb8] + TableTraits v1.0.0
[bd369af6] + Tables v0.2.11
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[9fa8497b] + Future
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[4607b0f0] + SuiteSparse
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building Rmath → `~/.julia/packages/Rmath/BoBag/deps/build.log`
Path `/home/pkgeval/.julia/packages/Rmath/BoBag` exists and looks like the correct package. Using existing path.
Updating `/tmp/jl_yoGRKi/Project.toml`
[79098fc4] + Rmath v0.6.0 [`~/.julia/packages/Rmath/BoBag`]
Updating `/tmp/jl_yoGRKi/Manifest.toml`
[79098fc4] ~ Rmath v0.6.0 ⇒ v0.6.0 [`~/.julia/packages/Rmath/BoBag`]
Testing CancerSeqSim
┌ Error: Pkg.Types.PkgError("could not find project file in package at /home/pkgeval/.julia/packages/CancerSeqSim/CGiBZ")
└ @ Pkg.Operations /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/Operations.jl:1371
ERROR: could not find project file in package at /home/pkgeval/.julia/packages/CancerSeqSim/CGiBZ
Stacktrace:
[1] pkgerror(::String) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/Types.jl:54
[2] resolve_projectfile!(::Pkg.Types.Context, ::Pkg.Types.PackageSpec, ::String) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/Types.jl:634
[3] handle_repo_develop!(::Pkg.Types.Context, ::Pkg.Types.PackageSpec, ::Bool) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/Types.jl:455
[4] handle_repos_develop!(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}, ::Bool) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/Types.jl:502
[5] develop(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; shared::Bool, strict::Bool, platform::Pkg.BinaryPlatforms.Linux, kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:91
[6] develop(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:63
[7] develop(::Array{Pkg.Types.PackageSpec,1}; kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:60
[8] develop(::Array{Pkg.Types.PackageSpec,1}) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:60
[9] develop(::Pkg.Types.PackageSpec; kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:57
[10] develop at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:57 [inlined]
[11] (::Pkg.Operations.var"#85#87"{String,String,Pkg.Operations.var"#89#90"{Bool,Cmd,Cmd,Nothing,Pkg.Types.Context,Array{String,1},String,Pkg.Types.PackageSpec},String})() at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/Operations.jl:1373
[12] with_temp_env(::Pkg.Operations.var"#85#87"{String,String,Pkg.Operations.var"#89#90"{Bool,Cmd,Cmd,Nothing,Pkg.Types.Context,Array{String,1},String,Pkg.Types.PackageSpec},String}, ::String) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/Operations.jl:1292
[13] (::Pkg.Operations.var"#84#86"{Pkg.Operations.var"#89#90"{Bool,Cmd,Cmd,Nothing,Pkg.Types.Context,Array{String,1},String,Pkg.Types.PackageSpec},Pkg.Types.Context,Pkg.Types.PackageSpec,String,String,Pkg.Types.Project,String})(::String) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/Operations.jl:1366
[14] mktempdir(::Pkg.Operations.var"#84#86"{Pkg.Operations.var"#89#90"{Bool,Cmd,Cmd,Nothing,Pkg.Types.Context,Array{String,1},String,Pkg.Types.PackageSpec},Pkg.Types.Context,Pkg.Types.PackageSpec,String,String,Pkg.Types.Project,String}, ::String; prefix::String) at ./file.jl:673
[15] mktempdir(::Function, ::String) at ./file.jl:671 (repeats 2 times)
[16] sandbox(::Function, ::Pkg.Types.Context, ::Pkg.Types.PackageSpec, ::String, ::String, ::Pkg.Types.Project) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/Operations.jl:1333
[17] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/Operations.jl:1458
[18] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:313
[19] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:300
[20] #test#66 at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:294 [inlined]
[21] test at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:294 [inlined]
[22] #test#65 at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:293 [inlined]
[23] test at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:293 [inlined]
[24] test(::String; kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:292
[25] test(::String) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:292
[26] top-level scope at none:12
caused by [exception 1]
could not find project file in package at /home/pkgeval/.julia/packages/CancerSeqSim/CGiBZ
Stacktrace:
[1] pkgerror(::String) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/Types.jl:54
[2] resolve_projectfile!(::Pkg.Types.Context, ::Pkg.Types.PackageSpec, ::String) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/Types.jl:634
[3] handle_repo_develop!(::Pkg.Types.Context, ::Pkg.Types.PackageSpec, ::Bool) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/Types.jl:455
[4] handle_repos_develop!(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}, ::Bool) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/Types.jl:502
[5] develop(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; shared::Bool, strict::Bool, platform::Pkg.BinaryPlatforms.Linux, kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:91
[6] develop(::Array{Pkg.Types.PackageSpec,1}; kwargs::Base.Iterators.Pairs{Symbol,Bool,Tuple{Symbol},NamedTuple{(:strict,),Tuple{Bool}}}) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:60
[7] develop(::Pkg.Types.PackageSpec; kwargs::Base.Iterators.Pairs{Symbol,Bool,Tuple{Symbol},NamedTuple{(:strict,),Tuple{Bool}}}) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:57
[8] (::Pkg.Operations.var"#85#87"{String,String,Pkg.Operations.var"#89#90"{Bool,Cmd,Cmd,Nothing,Pkg.Types.Context,Array{String,1},String,Pkg.Types.PackageSpec},String})() at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/Operations.jl:1368
[9] with_temp_env(::Pkg.Operations.var"#85#87"{String,String,Pkg.Operations.var"#89#90"{Bool,Cmd,Cmd,Nothing,Pkg.Types.Context,Array{String,1},String,Pkg.Types.PackageSpec},String}, ::String) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/Operations.jl:1292
[10] (::Pkg.Operations.var"#84#86"{Pkg.Operations.var"#89#90"{Bool,Cmd,Cmd,Nothing,Pkg.Types.Context,Array{String,1},String,Pkg.Types.PackageSpec},Pkg.Types.Context,Pkg.Types.PackageSpec,String,String,Pkg.Types.Project,String})(::String) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/Operations.jl:1366
[11] mktempdir(::Pkg.Operations.var"#84#86"{Pkg.Operations.var"#89#90"{Bool,Cmd,Cmd,Nothing,Pkg.Types.Context,Array{String,1},String,Pkg.Types.PackageSpec},Pkg.Types.Context,Pkg.Types.PackageSpec,String,String,Pkg.Types.Project,String}, ::String; prefix::String) at ./file.jl:673
[12] mktempdir(::Function, ::String) at ./file.jl:671 (repeats 2 times)
[13] sandbox(::Function, ::Pkg.Types.Context, ::Pkg.Types.PackageSpec, ::String, ::String, ::Pkg.Types.Project) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/Operations.jl:1333
[14] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/Operations.jl:1458
[15] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:313
[16] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:300
[17] #test#66 at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:294 [inlined]
[18] test at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:294 [inlined]
[19] #test#65 at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:293 [inlined]
[20] test at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:293 [inlined]
[21] test(::String; kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:292
[22] test(::String) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:292
[23] top-level scope at none:12