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1.4.0-DEV-81899bf99e.log
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Julia Version 1.4.0-DEV.634
Commit 81899bf99e (2019-12-18 10:13 UTC)
Platform Info:
OS: Linux (x86_64-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-8.0.1 (ORCJIT, skylake)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
Resolving package versions...
Installed Missings ──────────────────── v0.4.3
Installed SimpleTraits ──────────────── v0.9.1
Installed Bio ───────────────────────── v1.0.0
Installed MetaGraphs ────────────────── v0.6.4
Installed OrderedCollections ────────── v1.1.0
Installed Polynomials ───────────────── v0.6.0
Installed TranscodingStreams ────────── v0.9.5
Installed DataFrames ────────────────── v0.20.0
Installed Tables ────────────────────── v0.2.11
Installed RecipesBase ───────────────── v0.7.0
Installed ColorTypes ────────────────── v0.9.0
Installed Gumbo ─────────────────────── v0.5.1
Installed IteratorInterfaceExtensions ─ v1.0.0
Installed Twiddle ───────────────────── v1.1.1
Installed Codecs ────────────────────── v0.5.0
Installed Format ────────────────────── v1.1.0
Installed Libz ──────────────────────── v1.0.1
Installed ArnoldiMethod ─────────────── v0.0.4
Installed InvertedIndices ───────────── v1.0.0
Installed BioAlignments ─────────────── v1.0.0
Installed Automa ────────────────────── v0.8.0
Installed FileIO ────────────────────── v1.2.0
Installed BufferedStreams ───────────── v1.0.0
Installed Combinatorics ─────────────── v0.7.0
Installed CodecZlib ─────────────────── v0.6.0
Installed EzXML ─────────────────────── v0.9.5
Installed Parsers ───────────────────── v0.3.10
Installed LightGraphs ───────────────── v1.3.0
Installed Reexport ──────────────────── v0.2.0
Installed FixedPointNumbers ─────────── v0.5.3
Installed XMLDict ───────────────────── v0.3.0
Installed DataAPI ───────────────────── v1.1.0
Installed AbstractTrees ─────────────── v0.2.1
Installed YAML ──────────────────────── v0.3.2
Installed MacroTools ────────────────── v0.5.3
Installed BinaryProvider ────────────── v0.5.8
Installed Compat ────────────────────── v2.2.0
Installed SortingAlgorithms ─────────── v0.3.1
Installed GenomicFeatures ───────────── v1.0.0
Installed DataStructures ────────────── v0.17.6
Installed IndexableBitVectors ───────── v1.0.0
Installed CategoricalArrays ─────────── v0.7.4
Installed GeneticVariation ──────────── v0.4.0
Installed BioSequences ──────────────── v1.1.0
Installed BioSymbols ────────────────── v3.1.0
Installed IniFile ───────────────────── v0.5.0
Installed JLD2 ──────────────────────── v0.1.9
Installed BioCore ───────────────────── v2.0.5
Installed HTTP ──────────────────────── v0.8.8
Installed IterTools ─────────────────── v1.3.0
Installed PooledArrays ──────────────── v0.5.2
Installed URIParser ─────────────────── v0.4.0
Installed DataValueInterfaces ───────── v1.0.0
Installed TableTraits ───────────────── v1.0.0
Installed JSON ──────────────────────── v0.21.0
Installed BGZFStreams ───────────────── v0.3.0
Installed StaticArrays ──────────────── v0.12.1
Installed BioServices ───────────────── v0.3.2
Installed IntervalTrees ─────────────── v1.0.0
Installed MbedTLS ───────────────────── v0.7.0
Installed Inflate ───────────────────── v0.1.1
Installed BioStructures ─────────────── v0.7.0
Installed BioTools ──────────────────── v1.0.0
Updating `~/.julia/environments/v1.4/Project.toml`
[3637df68] + Bio v1.0.0
Updating `~/.julia/environments/v1.4/Manifest.toml`
[1520ce14] + AbstractTrees v0.2.1
[ec485272] + ArnoldiMethod v0.0.4
[67c07d97] + Automa v0.8.0
[28d598bf] + BGZFStreams v0.3.0
[b99e7846] + BinaryProvider v0.5.8
[3637df68] + Bio v1.0.0
[00701ae9] + BioAlignments v1.0.0
[37cfa864] + BioCore v2.0.5
[7e6ae17a] + BioSequences v1.1.0
[a0d4ced5] + BioServices v0.3.2
[de9282ab] + BioStructures v0.7.0
[3c28c6f8] + BioSymbols v3.1.0
[fa51a905] + BioTools v1.0.0
[e1450e63] + BufferedStreams v1.0.0
[324d7699] + CategoricalArrays v0.7.4
[944b1d66] + CodecZlib v0.6.0
[19ecbf4d] + Codecs v0.5.0
[3da002f7] + ColorTypes v0.9.0
[861a8166] + Combinatorics v0.7.0
[34da2185] + Compat v2.2.0
[9a962f9c] + DataAPI v1.1.0
[a93c6f00] + DataFrames v0.20.0
[864edb3b] + DataStructures v0.17.6
[e2d170a0] + DataValueInterfaces v1.0.0
[8f5d6c58] + EzXML v0.9.5
[5789e2e9] + FileIO v1.2.0
[53c48c17] + FixedPointNumbers v0.5.3
[1fa38f19] + Format v1.1.0
[9bc6ac9d] + GeneticVariation v0.4.0
[899a7d2d] + GenomicFeatures v1.0.0
[708ec375] + Gumbo v0.5.1
[cd3eb016] + HTTP v0.8.8
[1cb3b9ac] + IndexableBitVectors v1.0.0
[d25df0c9] + Inflate v0.1.1
[83e8ac13] + IniFile v0.5.0
[524e6230] + IntervalTrees v1.0.0
[41ab1584] + InvertedIndices v1.0.0
[c8e1da08] + IterTools v1.3.0
[82899510] + IteratorInterfaceExtensions v1.0.0
[033835bb] + JLD2 v0.1.9
[682c06a0] + JSON v0.21.0
[2ec943e9] + Libz v1.0.1
[093fc24a] + LightGraphs v1.3.0
[1914dd2f] + MacroTools v0.5.3
[739be429] + MbedTLS v0.7.0
[626554b9] + MetaGraphs v0.6.4
[e1d29d7a] + Missings v0.4.3
[bac558e1] + OrderedCollections v1.1.0
[69de0a69] + Parsers v0.3.10
[f27b6e38] + Polynomials v0.6.0
[2dfb63ee] + PooledArrays v0.5.2
[3cdcf5f2] + RecipesBase v0.7.0
[189a3867] + Reexport v0.2.0
[699a6c99] + SimpleTraits v0.9.1
[a2af1166] + SortingAlgorithms v0.3.1
[90137ffa] + StaticArrays v0.12.1
[3783bdb8] + TableTraits v1.0.0
[bd369af6] + Tables v0.2.11
[3bb67fe8] + TranscodingStreams v0.9.5
[7200193e] + Twiddle v1.1.1
[30578b45] + URIParser v0.4.0
[228000da] + XMLDict v0.3.0
[ddb6d928] + YAML v0.3.2
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[9fa8497b] + Future
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[9abbd945] + Profile
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building Gumbo ────→ `~/.julia/packages/Gumbo/G7Qbw/deps/build.log`
┌ Error: Pkg.Types.PkgError("could not find project file in package at /home/pkgeval/.julia/packages/Gumbo/G7Qbw")
└ @ Pkg.Operations /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/Operations.jl:1371
ERROR: could not find project file in package at /home/pkgeval/.julia/packages/Gumbo/G7Qbw
Stacktrace:
[1] pkgerror(::String) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/Types.jl:54
[2] resolve_projectfile!(::Pkg.Types.Context, ::Pkg.Types.PackageSpec, ::String) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/Types.jl:634
[3] handle_repo_develop!(::Pkg.Types.Context, ::Pkg.Types.PackageSpec, ::Bool) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/Types.jl:455
[4] handle_repos_develop!(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}, ::Bool) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/Types.jl:502
[5] develop(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; shared::Bool, strict::Bool, platform::Pkg.BinaryPlatforms.Linux, kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:91
[6] develop(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:63
[7] develop(::Array{Pkg.Types.PackageSpec,1}; kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:60
[8] develop(::Array{Pkg.Types.PackageSpec,1}) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:60
[9] develop(::Pkg.Types.PackageSpec; kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:57
[10] develop at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:57 [inlined]
[11] (::Pkg.Operations.var"#85#87"{String,String,Pkg.Operations.var"#59#63"{Bool,Pkg.Types.Context,String,Pkg.Types.PackageSpec,String},String})() at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/Operations.jl:1373
[12] with_temp_env(::Pkg.Operations.var"#85#87"{String,String,Pkg.Operations.var"#59#63"{Bool,Pkg.Types.Context,String,Pkg.Types.PackageSpec,String},String}, ::String) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/Operations.jl:1292
[13] (::Pkg.Operations.var"#84#86"{Pkg.Operations.var"#59#63"{Bool,Pkg.Types.Context,String,Pkg.Types.PackageSpec,String},Pkg.Types.Context,Pkg.Types.PackageSpec,String,String,Pkg.Types.Project,String})(::String) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/Operations.jl:1366
[14] mktempdir(::Pkg.Operations.var"#84#86"{Pkg.Operations.var"#59#63"{Bool,Pkg.Types.Context,String,Pkg.Types.PackageSpec,String},Pkg.Types.Context,Pkg.Types.PackageSpec,String,String,Pkg.Types.Project,String}, ::String; prefix::String) at ./file.jl:673
[15] mktempdir(::Function, ::String) at ./file.jl:671 (repeats 2 times)
[16] sandbox(::Function, ::Pkg.Types.Context, ::Pkg.Types.PackageSpec, ::String, ::String, ::Pkg.Types.Project) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/Operations.jl:1333
[17] build_versions(::Pkg.Types.Context, ::Array{Base.UUID,1}; might_need_to_resolve::Bool, verbose::Bool) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/Operations.jl:873
[18] build_versions at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/Operations.jl:834 [inlined]
[19] add(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}, ::Array{Base.UUID,1}; preserve::Pkg.Types.PreserveLevel, platform::Pkg.BinaryPlatforms.Linux) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/Operations.jl:1088
[20] add(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; preserve::Pkg.Types.PreserveLevel, platform::Pkg.BinaryPlatforms.Linux, kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:159
[21] add(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:112
[22] #add#27 at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:109 [inlined]
[23] add at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:109 [inlined]
[24] #add#24 at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:107 [inlined]
[25] add at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:107 [inlined]
[26] add(::String; kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:106
[27] add(::String) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:106
[28] top-level scope at none:11
caused by [exception 1]
could not find project file in package at /home/pkgeval/.julia/packages/Gumbo/G7Qbw
Stacktrace:
[1] pkgerror(::String) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/Types.jl:54
[2] resolve_projectfile!(::Pkg.Types.Context, ::Pkg.Types.PackageSpec, ::String) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/Types.jl:634
[3] handle_repo_develop!(::Pkg.Types.Context, ::Pkg.Types.PackageSpec, ::Bool) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/Types.jl:455
[4] handle_repos_develop!(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}, ::Bool) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/Types.jl:502
[5] develop(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; shared::Bool, strict::Bool, platform::Pkg.BinaryPlatforms.Linux, kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:91
[6] develop(::Array{Pkg.Types.PackageSpec,1}; kwargs::Base.Iterators.Pairs{Symbol,Bool,Tuple{Symbol},NamedTuple{(:strict,),Tuple{Bool}}}) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:60
[7] develop(::Pkg.Types.PackageSpec; kwargs::Base.Iterators.Pairs{Symbol,Bool,Tuple{Symbol},NamedTuple{(:strict,),Tuple{Bool}}}) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:57
[8] (::Pkg.Operations.var"#85#87"{String,String,Pkg.Operations.var"#59#63"{Bool,Pkg.Types.Context,String,Pkg.Types.PackageSpec,String},String})() at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/Operations.jl:1368
[9] with_temp_env(::Pkg.Operations.var"#85#87"{String,String,Pkg.Operations.var"#59#63"{Bool,Pkg.Types.Context,String,Pkg.Types.PackageSpec,String},String}, ::String) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/Operations.jl:1292
[10] (::Pkg.Operations.var"#84#86"{Pkg.Operations.var"#59#63"{Bool,Pkg.Types.Context,String,Pkg.Types.PackageSpec,String},Pkg.Types.Context,Pkg.Types.PackageSpec,String,String,Pkg.Types.Project,String})(::String) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/Operations.jl:1366
[11] mktempdir(::Pkg.Operations.var"#84#86"{Pkg.Operations.var"#59#63"{Bool,Pkg.Types.Context,String,Pkg.Types.PackageSpec,String},Pkg.Types.Context,Pkg.Types.PackageSpec,String,String,Pkg.Types.Project,String}, ::String; prefix::String) at ./file.jl:673
[12] mktempdir(::Function, ::String) at ./file.jl:671 (repeats 2 times)
[13] sandbox(::Function, ::Pkg.Types.Context, ::Pkg.Types.PackageSpec, ::String, ::String, ::Pkg.Types.Project) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/Operations.jl:1333
[14] build_versions(::Pkg.Types.Context, ::Array{Base.UUID,1}; might_need_to_resolve::Bool, verbose::Bool) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/Operations.jl:873
[15] build_versions at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/Operations.jl:834 [inlined]
[16] add(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}, ::Array{Base.UUID,1}; preserve::Pkg.Types.PreserveLevel, platform::Pkg.BinaryPlatforms.Linux) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/Operations.jl:1088
[17] add(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; preserve::Pkg.Types.PreserveLevel, platform::Pkg.BinaryPlatforms.Linux, kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:159
[18] add(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:112
[19] #add#27 at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:109 [inlined]
[20] add at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:109 [inlined]
[21] #add#24 at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:107 [inlined]
[22] add at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:107 [inlined]
[23] add(::String; kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:106
[24] add(::String) at /workspace/srcdir/usr/share/julia/stdlib/v1.4/Pkg/src/API.jl:106
[25] top-level scope at none:11