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1.5.0-DEV-ed177d17d6.log
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Julia Version 1.5.0-DEV.158
Commit ed177d17d6 (2020-01-27 16:45 UTC)
Platform Info:
OS: Linux (x86_64-pc-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-8.0.1 (ORCJIT, skylake)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
Installed Blosc ────────────── v0.5.1
Installed Parsers ──────────── v0.3.10
Installed Compat ───────────── v2.2.0
Installed OffsetArrays ─────── v0.11.4
Installed MbedTLS ──────────── v0.7.0
Installed Zarr ─────────────── v0.3.3
Installed IterTools ────────── v1.3.0
Installed HTTP ─────────────── v0.8.8
Installed URIParser ────────── v0.4.0
Installed CMakeWrapper ─────── v0.2.3
Installed FilePathsBase ────── v0.6.2
Installed Zlib_jll ─────────── v1.2.11+7
Installed Parameters ───────── v0.12.0
Installed BinaryProvider ───── v0.5.8
Installed OrderedCollections ─ v1.1.0
Installed DataStructures ───── v0.17.9
Installed Libiconv_jll ─────── v1.16.0+0
Installed BinDeps ──────────── v1.0.0
Installed IniFile ──────────── v0.5.0
Installed AWSCore ──────────── v0.6.7
Installed JSON ─────────────── v0.21.0
Installed Retry ────────────── v0.4.0
Installed XMLDict ──────────── v0.4.0
Installed Mocking ──────────── v0.7.0
Installed EzXML ────────────── v1.1.0
Installed FillArrays ───────── v0.8.4
Installed SymDict ──────────── v0.3.0
Installed XML2_jll ─────────── v2.9.9+1
Installed CMake ────────────── v1.1.2
Installed AWSS3 ────────────── v0.6.2
Installed LazyJSON ─────────── v0.1.1
Installed AWSSDK ───────────── v0.4.0
Updating `~/.julia/environments/v1.5/Project.toml`
[0a941bbe] + Zarr v0.3.3
Updating `~/.julia/environments/v1.5/Manifest.toml`
[4f1ea46c] + AWSCore v0.6.7
[1c724243] + AWSS3 v0.6.2
[0d499d91] + AWSSDK v0.4.0
[9e28174c] + BinDeps v1.0.0
[b99e7846] + BinaryProvider v0.5.8
[a74b3585] + Blosc v0.5.1
[631607c0] + CMake v1.1.2
[d5fb7624] + CMakeWrapper v0.2.3
[34da2185] + Compat v2.2.0
[864edb3b] + DataStructures v0.17.9
[8f5d6c58] + EzXML v1.1.0
[48062228] + FilePathsBase v0.6.2
[1a297f60] + FillArrays v0.8.4
[cd3eb016] + HTTP v0.8.8
[83e8ac13] + IniFile v0.5.0
[c8e1da08] + IterTools v1.3.0
[682c06a0] + JSON v0.21.0
[fc18253b] + LazyJSON v0.1.1
[94ce4f54] + Libiconv_jll v1.16.0+0
[739be429] + MbedTLS v0.7.0
[78c3b35d] + Mocking v0.7.0
[6fe1bfb0] + OffsetArrays v0.11.4
[bac558e1] + OrderedCollections v1.1.0
[d96e819e] + Parameters v0.12.0
[69de0a69] + Parsers v0.3.10
[20febd7b] + Retry v0.4.0
[2da68c74] + SymDict v0.3.0
[30578b45] + URIParser v0.4.0
[02c8fc9c] + XML2_jll v2.9.9+1
[228000da] + XMLDict v0.4.0
[0a941bbe] + Zarr v0.3.3
[83775a58] + Zlib_jll v1.2.11+7
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building MbedTLS → `~/.julia/packages/MbedTLS/a1JFn/deps/build.log`
Updating `/tmp/jl_hOynXF/Project.toml`
[no changes]
Updating `/tmp/jl_hOynXF/Manifest.toml`
[no changes]
Building CMake ──→ `~/.julia/packages/CMake/nSK2r/deps/build.log`
Updating `/tmp/jl_iWsqVI/Project.toml`
[no changes]
Updating `/tmp/jl_iWsqVI/Manifest.toml`
[no changes]
Building Blosc ──→ `~/.julia/packages/Blosc/lzFr0/deps/build.log`
Updating `/tmp/jl_jaS9Qg/Project.toml`
[no changes]
Updating `/tmp/jl_jaS9Qg/Manifest.toml`
[no changes]
Testing Zarr
Installed Conda ────────── v1.3.0
Installed PyCall ───────── v1.91.2
Installed VersionParsing ─ v1.2.0
Installed MacroTools ───── v0.5.3
Updating `/tmp/jl_krydfF/Project.toml`
[8f4d0f93] + Conda v1.3.0
[438e738f] + PyCall v1.91.2
Updating `/tmp/jl_krydfF/Manifest.toml`
[8f4d0f93] + Conda v1.3.0
[1914dd2f] + MacroTools v0.5.3
[438e738f] + PyCall v1.91.2
[81def892] + VersionParsing v1.2.0
Building Conda ─→ `~/.julia/packages/Conda/kLXeC/deps/build.log`
Updating `/tmp/jl_hMhJkG/Project.toml`
[no changes]
Updating `/tmp/jl_hMhJkG/Manifest.toml`
[no changes]
Building PyCall → `~/.julia/packages/PyCall/ttONZ/deps/build.log`
Updating `/tmp/jl_U9hLL7/Project.toml`
[no changes]
Updating `/tmp/jl_U9hLL7/Manifest.toml`
[no changes]
Running sandbox
Status `/tmp/jl_krydfF/Project.toml`
[4f1ea46c] AWSCore v0.6.7
[8f4d0f93] Conda v1.3.0
[682c06a0] JSON v0.21.0
[438e738f] PyCall v1.91.2
[0a941bbe] Zarr v0.3.3
[44cfe95a] Pkg
[8dfed614] Test
Python zarr implementation: Error During Test at /home/pkgeval/.julia/packages/Zarr/bi2mW/test/python.jl:6
Got exception outside of a @test
PyError (PyImport_ImportModule
The Python package zarr could not be found by pyimport. Usually this means
that you did not install zarr in the Python version being used by PyCall.
PyCall is currently configured to use the Python version at:
/usr/bin/python3
and you should use whatever mechanism you usually use (apt-get, pip, conda,
etcetera) to install the Python package containing the zarr module.
One alternative is to re-configure PyCall to use a different Python
version on your system: set ENV["PYTHON"] to the path/name of the python
executable you want to use, run Pkg.build("PyCall"), and re-launch Julia.
Another alternative is to configure PyCall to use a Julia-specific Python
distribution via the Conda.jl package (which installs a private Anaconda
Python distribution), which has the advantage that packages can be installed
and kept up-to-date via Julia. As explained in the PyCall documentation,
set ENV["PYTHON"]="", run Pkg.build("PyCall"), and re-launch Julia. Then,
To install the zarr module, you can use `pyimport_conda("zarr", PKG)`,
where PKG is the Anaconda package the contains the module zarr,
or alternatively you can use the Conda package directly (via
`using Conda` followed by `Conda.add` etcetera).
) <class 'ModuleNotFoundError'>
ModuleNotFoundError("No module named 'zarr'",)
Stacktrace:
[1] pyimport(::String) at /home/pkgeval/.julia/packages/PyCall/ttONZ/src/PyCall.jl:544
[2] pyimport_conda(::String, ::String, ::String) at /home/pkgeval/.julia/packages/PyCall/ttONZ/src/PyCall.jl:702
[3] pyimport_conda(::String, ::String) at /home/pkgeval/.julia/packages/PyCall/ttONZ/src/PyCall.jl:701
[4] top-level scope at /home/pkgeval/.julia/packages/Zarr/bi2mW/test/python.jl:11
[5] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1113
[6] top-level scope at /home/pkgeval/.julia/packages/Zarr/bi2mW/test/python.jl:8
[7] include(::String) at ./client.jl:439
[8] top-level scope at /home/pkgeval/.julia/packages/Zarr/bi2mW/test/runtests.jl:182
[9] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1113
[10] top-level scope at /home/pkgeval/.julia/packages/Zarr/bi2mW/test/runtests.jl:10
[11] include(::String) at ./client.jl:439
[12] top-level scope at none:6
[13] eval(::Module, ::Any) at ./boot.jl:331
[14] exec_options(::Base.JLOptions) at ./client.jl:264
[15] _start() at ./client.jl:484
Test Summary: | Pass Error Total
Zarr | 145 1 146
ZArray | 32 32
Metadata | 32 32
getindex/setindex | 9 9
resize | 11 11
Path Normalization | 5 5
DirectoryStore | 22 22
DictStore | 21 21
AWS S3 Storage | 8 8
GCS S3 Storage | 5 5
Python zarr implementation | 1 1
ERROR: LoadError: Some tests did not pass: 145 passed, 0 failed, 1 errored, 0 broken.
in expression starting at /home/pkgeval/.julia/packages/Zarr/bi2mW/test/runtests.jl:7
err = ProcessFailedException(Base.Process[Process(`/opt/julia/bin/julia -Cnative -J/opt/julia/lib/julia/sys.so -g1 --code-coverage=none --color=no --compiled-modules=yes --check-bounds=yes --inline=yes --startup-file=no --track-allocation=none --eval 'append!(empty!(Base.DEPOT_PATH), ["/home/pkgeval/.julia", "/opt/julia/local/share/julia", "/opt/julia/share/julia", "/usr/local/share/julia"])
append!(empty!(Base.DL_LOAD_PATH), String[])
cd("/home/pkgeval/.julia/packages/Zarr/bi2mW/test")
append!(empty!(ARGS), String[])
include("/home/pkgeval/.julia/packages/Zarr/bi2mW/test/runtests.jl")
'`, ProcessExited(1))])
ERROR: Package Zarr errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String,N} where N) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/Types.jl:54
[2] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/Operations.jl:1471
[3] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:313
[4] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:300
[5] #test#66 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:294 [inlined]
[6] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:294 [inlined]
[7] #test#65 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:293 [inlined]
[8] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:293 [inlined]
[9] test(::String; kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:292
[10] test(::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:292
[11] top-level scope at none:13