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1.5.0-DEV-ed177d17d6.log
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Julia Version 1.5.0-DEV.158
Commit ed177d17d6 (2020-01-27 16:45 UTC)
Platform Info:
OS: Linux (x86_64-pc-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-8.0.1 (ORCJIT, skylake)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
Installed IntelOpenMP_jll ────── v2018.0.3+0
Installed Arpack ─────────────── v0.4.0
Installed DiffResults ────────── v1.0.2
Installed AbstractFFTs ───────── v0.5.0
Installed StatsFuns ──────────── v0.9.3
Installed QuadGK ─────────────── v2.3.1
Installed ZygoteRules ────────── v0.2.0
Installed SortingAlgorithms ──── v0.3.1
Installed OpenSpecFun_jll ────── v0.5.3+1
Installed FFTW ───────────────── v1.2.0
Installed Stheno ─────────────── v0.5.0
Installed BinaryProvider ─────── v0.5.8
Installed Distributions ──────── v0.21.12
Installed BlockArrays ────────── v0.10.2
Installed Arpack_jll ─────────── v3.5.0+2
Installed OpenBLAS_jll ───────── v0.3.7+4
Installed CommonSubexpressions ─ v0.2.0
Installed SpecialFunctions ───── v0.9.0
Installed OrderedCollections ─── v1.1.0
Installed Distances ──────────── v0.8.2
Installed NNlib ──────────────── v0.6.4
Installed StatsBase ──────────── v0.32.0
Installed Missings ───────────── v0.4.3
Installed DataStructures ─────── v0.17.9
Installed ForwardDiff ────────── v0.10.9
Installed DataAPI ────────────── v1.1.0
Installed FFTW_jll ───────────── v3.3.9+3
Installed StaticArrays ───────── v0.12.1
Installed IRTools ────────────── v0.3.1
Installed MKL_jll ────────────── v2019.0.117+2
Installed Zygote ─────────────── v0.4.6
Installed Requires ───────────── v1.0.0
Installed MacroTools ─────────── v0.5.3
Installed FillArrays ─────────── v0.8.4
Installed DiffRules ──────────── v1.0.0
Installed NaNMath ────────────── v0.3.3
Installed RecipesBase ────────── v0.7.0
Installed Reexport ───────────── v0.2.0
Installed PDMats ─────────────── v0.9.11
Installed Rmath ──────────────── v0.6.0
Updating `~/.julia/environments/v1.5/Project.toml`
[8188c328] + Stheno v0.5.0
Updating `~/.julia/environments/v1.5/Manifest.toml`
[621f4979] + AbstractFFTs v0.5.0
[7d9fca2a] + Arpack v0.4.0
[68821587] + Arpack_jll v3.5.0+2
[b99e7846] + BinaryProvider v0.5.8
[8e7c35d0] + BlockArrays v0.10.2
[bbf7d656] + CommonSubexpressions v0.2.0
[9a962f9c] + DataAPI v1.1.0
[864edb3b] + DataStructures v0.17.9
[163ba53b] + DiffResults v1.0.2
[b552c78f] + DiffRules v1.0.0
[b4f34e82] + Distances v0.8.2
[31c24e10] + Distributions v0.21.12
[7a1cc6ca] + FFTW v1.2.0
[f5851436] + FFTW_jll v3.3.9+3
[1a297f60] + FillArrays v0.8.4
[f6369f11] + ForwardDiff v0.10.9
[7869d1d1] + IRTools v0.3.1
[1d5cc7b8] + IntelOpenMP_jll v2018.0.3+0
[856f044c] + MKL_jll v2019.0.117+2
[1914dd2f] + MacroTools v0.5.3
[e1d29d7a] + Missings v0.4.3
[872c559c] + NNlib v0.6.4
[77ba4419] + NaNMath v0.3.3
[4536629a] + OpenBLAS_jll v0.3.7+4
[efe28fd5] + OpenSpecFun_jll v0.5.3+1
[bac558e1] + OrderedCollections v1.1.0
[90014a1f] + PDMats v0.9.11
[1fd47b50] + QuadGK v2.3.1
[3cdcf5f2] + RecipesBase v0.7.0
[189a3867] + Reexport v0.2.0
[ae029012] + Requires v1.0.0
[79098fc4] + Rmath v0.6.0
[a2af1166] + SortingAlgorithms v0.3.1
[276daf66] + SpecialFunctions v0.9.0
[90137ffa] + StaticArrays v0.12.1
[2913bbd2] + StatsBase v0.32.0
[4c63d2b9] + StatsFuns v0.9.3
[8188c328] + Stheno v0.5.0
[e88e6eb3] + Zygote v0.4.6
[700de1a5] + ZygoteRules v0.2.0
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8ba89e20] + Distributed
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[4607b0f0] + SuiteSparse
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building FFTW ─→ `~/.julia/packages/FFTW/qqcBj/deps/build.log`
Updating `/tmp/jl_25epZE/Project.toml`
[no changes]
Updating `/tmp/jl_25epZE/Manifest.toml`
[no changes]
Building NNlib → `~/.julia/packages/NNlib/3krvM/deps/build.log`
Updating `/tmp/jl_028AJn/Project.toml`
[no changes]
Updating `/tmp/jl_028AJn/Manifest.toml`
[no changes]
Building Rmath → `~/.julia/packages/Rmath/BoBag/deps/build.log`
Updating `/tmp/jl_APltvN/Project.toml`
[no changes]
Updating `/tmp/jl_APltvN/Manifest.toml`
[no changes]
Testing Stheno
Installed TimerOutputs ────── v0.5.3
Installed FiniteDifferences ─ v0.9.1
Updating `/tmp/jl_qgZH0B/Project.toml`
[26cc04aa] + FiniteDifferences v0.9.1
[a759f4b9] + TimerOutputs v0.5.3
Updating `/tmp/jl_qgZH0B/Manifest.toml`
[26cc04aa] + FiniteDifferences v0.9.1
[a759f4b9] + TimerOutputs v0.5.3
Running sandbox
Status `/tmp/jl_qgZH0B/Project.toml`
[8e7c35d0] BlockArrays v0.10.2
[b4f34e82] Distances v0.8.2
[31c24e10] Distributions v0.21.12
[26cc04aa] FiniteDifferences v0.9.1
[1914dd2f] MacroTools v0.5.3
[3cdcf5f2] RecipesBase v0.7.0
[8188c328] Stheno v0.5.0
[a759f4b9] TimerOutputs v0.5.3
[e88e6eb3] Zygote v0.4.6
[700de1a5] ZygoteRules v0.2.0
[37e2e46d] LinearAlgebra
[9a3f8284] Random
[10745b16] Statistics
[8dfed614] Test
WARNING: could not import Compiler.just_construct_ssa into Wrap
WARNING: Method definition logabsdet(LinearAlgebra.Diagonal{T, V} where V<:AbstractArray{T, 1} where T) in module LinearAlgebra at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/LinearAlgebra/src/diagonal.jl:685 overwritten in module Stheno at /home/pkgeval/.julia/packages/Stheno/j89z0/src/util/block_arrays/diagonal.jl:202.
** incremental compilation may be fatally broken for this module **
util:
Matrix: Error During Test at /home/pkgeval/.julia/packages/Stheno/j89z0/test/runtests.jl:10
Got exception outside of a @test
ArgumentError: cannot set index in the upper triangular part (1, 2) of a LowerTriangular matrix to a nonzero value (-0.022944432437709758)
Stacktrace:
[1] setindex! at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/LinearAlgebra/src/triangular.jl:259 [inlined]
[2] _setindex! at ./abstractarray.jl:1108 [inlined]
[3] setindex! at ./abstractarray.jl:1073 [inlined]
[4] copyto!(::LowerTriangular{Float64,Array{Float64,2}}, ::Int64, ::Array{Float64,1}, ::Int64, ::Int64) at ./abstractarray.jl:841
[5] ldiv!(::UpperTriangular{Float64,Array{Float64,2}}, ::LowerTriangular{Float64,Array{Float64,2}}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/LinearAlgebra/src/bidiag.jl:736
[6] (::Zygote.var"#1322#1323"{Array{Float64,2},Cholesky{Float64,Array{Float64,2}}})(::NamedTuple{(:uplo, :info, :factors),Tuple{Nothing,Nothing,Diagonal{Float64,Array{Float64,1}}}}) at /home/pkgeval/.julia/packages/Zygote/oMScO/src/lib/array.jl:450
[7] (::Zygote.var"#3437#back#1324"{Zygote.var"#1322#1323"{Array{Float64,2},Cholesky{Float64,Array{Float64,2}}}})(::NamedTuple{(:uplo, :info, :factors),Tuple{Nothing,Nothing,Diagonal{Float64,Array{Float64,1}}}}) at /home/pkgeval/.julia/packages/ZygoteRules/6nssF/src/adjoint.jl:49
[8] #96 at /home/pkgeval/.julia/packages/Stheno/j89z0/test/util/block_arrays/diagonal.jl:73 [inlined]
[9] (::typeof(∂(#96)))(::Float64) at /home/pkgeval/.julia/packages/Zygote/oMScO/src/compiler/interface2.jl:0
[10] (::Zygote.var"#26#27"{typeof(∂(#96))})(::Float64) at /home/pkgeval/.julia/packages/Zygote/oMScO/src/compiler/interface.jl:38
[11] BlockDiagonal_chol_tests(::MersenneTwister, ::Array{Array{Float64,2},1}) at /home/pkgeval/.julia/packages/Stheno/j89z0/test/util/block_arrays/diagonal.jl:79
[12] top-level scope at /home/pkgeval/.julia/packages/Stheno/j89z0/test/util/block_arrays/diagonal.jl:116
[13] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1113
[14] top-level scope at /home/pkgeval/.julia/packages/Stheno/j89z0/test/util/block_arrays/diagonal.jl:106
[15] top-level scope at /home/pkgeval/.julia/packages/TimerOutputs/7Id5J/src/TimerOutput.jl:214
[16] top-level scope at /home/pkgeval/.julia/packages/Stheno/j89z0/test/util/block_arrays/diagonal.jl:105
[17] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1113
[18] top-level scope at /home/pkgeval/.julia/packages/Stheno/j89z0/test/util/block_arrays/diagonal.jl:105
[19] top-level scope at /home/pkgeval/.julia/packages/TimerOutputs/7Id5J/src/TimerOutput.jl:214
[20] include(::String) at ./client.jl:439
[21] top-level scope at /home/pkgeval/.julia/packages/Stheno/j89z0/test/runtests.jl:24
[22] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1113
[23] top-level scope at /home/pkgeval/.julia/packages/Stheno/j89z0/test/runtests.jl:22
[24] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1113
[25] top-level scope at /home/pkgeval/.julia/packages/Stheno/j89z0/test/runtests.jl:19
[26] top-level scope at /home/pkgeval/.julia/packages/TimerOutputs/7Id5J/src/TimerOutput.jl:214
[27] top-level scope at /home/pkgeval/.julia/packages/Stheno/j89z0/test/runtests.jl:18
[28] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1113
[29] top-level scope at /home/pkgeval/.julia/packages/Stheno/j89z0/test/runtests.jl:17
[30] include(::String) at ./client.jl:439
[31] top-level scope at none:6
[32] eval(::Module, ::Any) at ./boot.jl:331
[33] exec_options(::Base.JLOptions) at ./client.jl:264
[34] _start() at ./client.jl:484
gp:
composite:
abstract_gp:
Test Summary: | Pass Error Broken Total
Stheno | 2756 1 4 2761
util | 296 1 4 301
zygote_rules | 25 25
cholesky | 33 33
block_arrays | 144 1 4 149
fdm stuff | 2 2
dense | 14 14
BlockDiagonal | 128 1 4 133
Matrix | 46 1 47
general | 7 7
Diagonal{T, <:Vector{T}} | 15 15
Negation | 5 5
adjoint | 5 5
transpose | 5 5
UpperTriangular | 5 5
Symmetric | 3 3
tr_At_A | 4 4
BlockDiagonal * BlockDiagonal | 7 7
BlockDiagonal * Matrix | 5 1 6
BlockDiagonal * Vector | 4 1 5
ldiv(BlockDiagonal, Matrix) | 5 1 6
ldiv(BlockDiagonal, Vector) | 5 1 6
TriangularBlockDiagonal under BlockDiagonal | 7 7
adjoint(TriangularBlockDiagonal) under BlockDiagonal | 7 7
abstract_data_set | 38 38
distances | 56 56
gp | 1752 1752
composite | 664 664
abstract_gp | 44 44
ERROR: LoadError: Some tests did not pass: 2756 passed, 0 failed, 1 errored, 4 broken.
in expression starting at /home/pkgeval/.julia/packages/Stheno/j89z0/test/runtests.jl:15
err = ProcessFailedException(Base.Process[Process(`/opt/julia/bin/julia -Cnative -J/opt/julia/lib/julia/sys.so -g1 --code-coverage=none --color=no --compiled-modules=yes --check-bounds=yes --inline=yes --startup-file=no --track-allocation=none --eval 'append!(empty!(Base.DEPOT_PATH), ["/home/pkgeval/.julia", "/opt/julia/local/share/julia", "/opt/julia/share/julia", "/usr/local/share/julia"])
append!(empty!(Base.DL_LOAD_PATH), String[])
cd("/home/pkgeval/.julia/packages/Stheno/j89z0/test")
append!(empty!(ARGS), String[])
include("/home/pkgeval/.julia/packages/Stheno/j89z0/test/runtests.jl")
'`, ProcessExited(1))])
ERROR: Package Stheno errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String,N} where N) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/Types.jl:54
[2] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/Operations.jl:1471
[3] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:313
[4] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:300
[5] #test#66 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:294 [inlined]
[6] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:294 [inlined]
[7] #test#65 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:293 [inlined]
[8] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:293 [inlined]
[9] test(::String; kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:292
[10] test(::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:292
[11] top-level scope at none:13