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1.5.0-DEV-ed177d17d6.log
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Julia Version 1.5.0-DEV.158
Commit ed177d17d6 (2020-01-27 16:45 UTC)
Platform Info:
OS: Linux (x86_64-pc-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-8.0.1 (ORCJIT, skylake)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
Installed AutoHashEquals ────────────── v0.2.0
Installed Parsers ───────────────────── v0.3.10
Installed UnionFind ─────────────────── v0.1.0
Installed LightXML ──────────────────── v0.8.1
Installed RecursiveFactorization ────── v0.1.0
Installed RecursiveArrayTools ───────── v2.0.4
Installed ChainRulesCore ────────────── v0.6.1
Installed Petri ─────────────────────── v0.1.2
Installed Compat ────────────────────── v2.2.0
Installed ZygoteRules ───────────────── v0.2.0
Installed LaTeXStrings ──────────────── v1.0.3
Installed BinaryProvider ────────────── v0.5.8
Installed ArrayInterface ────────────── v2.3.1
Installed CanonicalTraits ───────────── v0.1.0
Installed OrderedCollections ────────── v1.1.0
Installed Match ─────────────────────── v1.1.0
Installed Latexify ──────────────────── v0.12.0
Installed SpecialFunctions ──────────── v0.8.0
Installed URIParser ─────────────────── v0.4.0
Installed Parameters ────────────────── v0.12.0
Installed IteratorInterfaceExtensions ─ v1.0.0
Installed GeneralizedGenerated ──────── v0.2.1
Installed DataStructures ────────────── v0.17.9
Installed DocStringExtensions ───────── v0.8.1
Installed FileIO ────────────────────── v1.2.1
Installed CodecZlib ─────────────────── v0.6.0
Installed MetaGraphs ────────────────── v0.6.4
Installed JLD2 ──────────────────────── v0.1.11
Installed MuladdMacro ───────────────── v0.2.2
Installed Inflate ───────────────────── v0.1.1
Installed ArnoldiMethod ─────────────── v0.0.4
Installed BinDeps ───────────────────── v1.0.0
Installed StaticArrays ──────────────── v0.11.1
Installed JSON ──────────────────────── v0.21.0
Installed NameResolution ────────────── v0.1.3
Installed Roots ─────────────────────── v0.8.4
Installed TableTraits ───────────────── v1.0.0
Installed FunctionWrappers ──────────── v1.0.0
Installed ModelingToolkit ───────────── v0.10.0
Installed JuliaVariables ────────────── v0.2.0
Installed DiffEqBase ────────────────── v6.13.1
Installed IterativeSolvers ──────────── v0.8.1
Installed MLStyle ───────────────────── v0.3.1
Installed LightGraphs ───────────────── v1.3.0
Installed Requires ──────────────────── v1.0.0
Installed MacroTools ────────────────── v0.5.3
Installed DiffRules ─────────────────── v0.1.0
Installed PrettyPrint ───────────────── v0.1.0
Installed NaNMath ───────────────────── v0.3.3
Installed RecipesBase ───────────────── v0.7.0
Installed Catlab ────────────────────── v0.3.0
Installed Reexport ──────────────────── v0.2.0
Installed TranscodingStreams ────────── v0.9.5
Installed TreeViews ─────────────────── v0.3.0
Installed SimpleTraits ──────────────── v0.9.1
Updating `~/.julia/environments/v1.5/Project.toml`
[4259d249] + Petri v0.1.2
Updating `~/.julia/environments/v1.5/Manifest.toml`
[ec485272] + ArnoldiMethod v0.0.4
[4fba245c] + ArrayInterface v2.3.1
[15f4f7f2] + AutoHashEquals v0.2.0
[9e28174c] + BinDeps v1.0.0
[b99e7846] + BinaryProvider v0.5.8
[a603d957] + CanonicalTraits v0.1.0
[134e5e36] + Catlab v0.3.0
[d360d2e6] + ChainRulesCore v0.6.1
[944b1d66] + CodecZlib v0.6.0
[34da2185] + Compat v2.2.0
[864edb3b] + DataStructures v0.17.9
[2b5f629d] + DiffEqBase v6.13.1
[b552c78f] + DiffRules v0.1.0
[ffbed154] + DocStringExtensions v0.8.1
[5789e2e9] + FileIO v1.2.1
[069b7b12] + FunctionWrappers v1.0.0
[6b9d7cbe] + GeneralizedGenerated v0.2.1
[d25df0c9] + Inflate v0.1.1
[42fd0dbc] + IterativeSolvers v0.8.1
[82899510] + IteratorInterfaceExtensions v1.0.0
[033835bb] + JLD2 v0.1.11
[682c06a0] + JSON v0.21.0
[b14d175d] + JuliaVariables v0.2.0
[b964fa9f] + LaTeXStrings v1.0.3
[23fbe1c1] + Latexify v0.12.0
[093fc24a] + LightGraphs v1.3.0
[9c8b4983] + LightXML v0.8.1
[d8e11817] + MLStyle v0.3.1
[1914dd2f] + MacroTools v0.5.3
[7eb4fadd] + Match v1.1.0
[626554b9] + MetaGraphs v0.6.4
[961ee093] + ModelingToolkit v0.10.0
[46d2c3a1] + MuladdMacro v0.2.2
[77ba4419] + NaNMath v0.3.3
[71a1bf82] + NameResolution v0.1.3
[bac558e1] + OrderedCollections v1.1.0
[d96e819e] + Parameters v0.12.0
[69de0a69] + Parsers v0.3.10
[4259d249] + Petri v0.1.2
[8162dcfd] + PrettyPrint v0.1.0
[3cdcf5f2] + RecipesBase v0.7.0
[731186ca] + RecursiveArrayTools v2.0.4
[f2c3362d] + RecursiveFactorization v0.1.0
[189a3867] + Reexport v0.2.0
[ae029012] + Requires v1.0.0
[f2b01f46] + Roots v0.8.4
[699a6c99] + SimpleTraits v0.9.1
[276daf66] + SpecialFunctions v0.8.0
[90137ffa] + StaticArrays v0.11.1
[3783bdb8] + TableTraits v1.0.0
[3bb67fe8] + TranscodingStreams v0.9.5
[a2a6695c] + TreeViews v0.3.0
[30578b45] + URIParser v0.4.0
[99c6138d] + UnionFind v0.1.0
[700de1a5] + ZygoteRules v0.2.0
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[4607b0f0] + SuiteSparse
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building LightXML ────────→ `~/.julia/packages/LightXML/W8FVT/deps/build.log`
Updating `/tmp/jl_Bbf4ms/Project.toml`
[no changes]
Updating `/tmp/jl_Bbf4ms/Manifest.toml`
[no changes]
Building SpecialFunctions → `~/.julia/packages/SpecialFunctions/ne2iw/deps/build.log`
Updating `/tmp/jl_xds87G/Project.toml`
[no changes]
Updating `/tmp/jl_xds87G/Manifest.toml`
[no changes]
Building CodecZlib ───────→ `~/.julia/packages/CodecZlib/5t9zO/deps/build.log`
Updating `/tmp/jl_bGzE9b/Project.toml`
[no changes]
Updating `/tmp/jl_bGzE9b/Manifest.toml`
[no changes]
Testing Petri
Installed DiffResults ────────── v1.0.2
Installed VertexSafeGraphs ───── v0.1.1
Installed SparseDiffTools ────── v1.3.3
Installed CommonSubexpressions ─ v0.2.0
Installed LabelledArrays ─────── v1.0.1
Installed ExponentialUtilities ─ v1.6.0
Installed ForwardDiff ────────── v0.10.9
Installed GenericSVD ─────────── v0.2.2
Installed Adapt ──────────────── v1.0.0
Installed FiniteDiff ─────────── v2.1.0
Installed OrdinaryDiffEq ─────── v5.28.1
Updating `/tmp/jl_96obz5/Project.toml`
[2ee39098] + LabelledArrays v1.0.1
[1dea7af3] + OrdinaryDiffEq v5.28.1
Updating `/tmp/jl_96obz5/Manifest.toml`
[79e6a3ab] + Adapt v1.0.0
[bbf7d656] + CommonSubexpressions v0.2.0
[163ba53b] + DiffResults v1.0.2
[d4d017d3] + ExponentialUtilities v1.6.0
[6a86dc24] + FiniteDiff v2.1.0
[f6369f11] + ForwardDiff v0.10.9
[01680d73] + GenericSVD v0.2.2
[2ee39098] + LabelledArrays v1.0.1
[1dea7af3] + OrdinaryDiffEq v5.28.1
[47a9eef4] + SparseDiffTools v1.3.3
[19fa3120] + VertexSafeGraphs v0.1.1
Running sandbox
Status `/tmp/jl_96obz5/Project.toml`
[134e5e36] Catlab v0.3.0
[6b9d7cbe] GeneralizedGenerated v0.2.1
[2ee39098] LabelledArrays v1.0.1
[1914dd2f] MacroTools v0.5.3
[961ee093] ModelingToolkit v0.10.0
[1dea7af3] OrdinaryDiffEq v5.28.1
[4259d249] Petri v0.1.2
[90137ffa] StaticArrays v0.11.1
[8dfed614] Test
Test Summary: | Pass Total
Equality | 4 4
SIR: Error During Test at /home/pkgeval/.julia/packages/Petri/1JIxf/test/stochastic.jl:13
Got exception outside of a @test
type Symbol has no field args
Stacktrace:
[1] getproperty(::Symbol, ::Symbol) at ./Base.jl:33
[2] (::Petri.var"#36#41"{Symbol,Symbol})(::Expr) at /home/pkgeval/.julia/packages/Petri/1JIxf/src/stochastic.jl:37
[3] walk(::Expr, ::Function, ::Petri.var"#36#41"{Symbol,Symbol}) at /home/pkgeval/.julia/packages/MacroTools/jYLA1/src/utils.jl:105
[4] postwalk at /home/pkgeval/.julia/packages/MacroTools/jYLA1/src/utils.jl:114 [inlined]
[5] (::Petri.var"#updateblock#40"{Symbol})(::Expr, ::Symbol) at /home/pkgeval/.julia/packages/Petri/1JIxf/src/stochastic.jl:3
[6] (::Petri.var"#39#46"{Petri.var"#updateblock#40"{Symbol},Petri.var"#poolconditions#43"{Petri.var"#head#42"}})(::Tuple{Operation,Operation}) at /home/pkgeval/.julia/packages/Petri/1JIxf/src/stochastic.jl:89
[7] iterate at ./generator.jl:47 [inlined]
[8] _collect(::Array{Tuple{Operation,Operation},1}, ::Base.Generator{Array{Tuple{Operation,Operation},1},Petri.var"#39#46"{Petri.var"#updateblock#40"{Symbol},Petri.var"#poolconditions#43"{Petri.var"#head#42"}}}, ::Base.EltypeUnknown, ::Base.HasShape{1}) at ./array.jl:678
[9] collect_similar(::Array{Tuple{Operation,Operation},1}, ::Base.Generator{Array{Tuple{Operation,Operation},1},Petri.var"#39#46"{Petri.var"#updateblock#40"{Symbol},Petri.var"#poolconditions#43"{Petri.var"#head#42"}}}) at ./array.jl:607
[10] map at ./abstractarray.jl:2072 [inlined]
[11] Δ at /home/pkgeval/.julia/packages/Petri/1JIxf/src/stochastic.jl:79 [inlined]
[12] Δ at /home/pkgeval/.julia/packages/Petri/1JIxf/src/stochastic.jl:2 [inlined]
[13] funckit(::Model{Any,Array{Operation,1},Array{Tuple{Operation,Operation},1},Array{Any,1},Array{Any,1}}) at /home/pkgeval/.julia/packages/Petri/1JIxf/src/stochastic.jl:147
[14] top-level scope at /home/pkgeval/.julia/packages/Petri/1JIxf/test/stochastic.jl:17
[15] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1113
[16] top-level scope at /home/pkgeval/.julia/packages/Petri/1JIxf/test/stochastic.jl:14
[17] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1113
[18] top-level scope at /home/pkgeval/.julia/packages/Petri/1JIxf/test/stochastic.jl:12
[19] include(::String) at ./client.jl:439
[20] top-level scope at /home/pkgeval/.julia/packages/Petri/1JIxf/test/runtests.jl:20
[21] include(::String) at ./client.jl:439
[22] top-level scope at none:6
[23] eval(::Module, ::Any) at ./boot.jl:331
[24] exec_options(::Base.JLOptions) at ./client.jl:264
[25] _start() at ./client.jl:484
caused by [exception 1]
type Symbol has no field args
Stacktrace:
[1] getproperty(::Symbol, ::Symbol) at ./Base.jl:33
[2] (::Petri.var"#36#41"{Symbol,Symbol})(::Expr) at /home/pkgeval/.julia/packages/Petri/1JIxf/src/stochastic.jl:22
[3] walk(::Expr, ::Function, ::Petri.var"#36#41"{Symbol,Symbol}) at /home/pkgeval/.julia/packages/MacroTools/jYLA1/src/utils.jl:105
[4] postwalk at /home/pkgeval/.julia/packages/MacroTools/jYLA1/src/utils.jl:114 [inlined]
[5] (::Petri.var"#updateblock#40"{Symbol})(::Expr, ::Symbol) at /home/pkgeval/.julia/packages/Petri/1JIxf/src/stochastic.jl:3
[6] (::Petri.var"#39#46"{Petri.var"#updateblock#40"{Symbol},Petri.var"#poolconditions#43"{Petri.var"#head#42"}})(::Tuple{Operation,Operation}) at /home/pkgeval/.julia/packages/Petri/1JIxf/src/stochastic.jl:89
[7] iterate at ./generator.jl:47 [inlined]
[8] _collect(::Array{Tuple{Operation,Operation},1}, ::Base.Generator{Array{Tuple{Operation,Operation},1},Petri.var"#39#46"{Petri.var"#updateblock#40"{Symbol},Petri.var"#poolconditions#43"{Petri.var"#head#42"}}}, ::Base.EltypeUnknown, ::Base.HasShape{1}) at ./array.jl:678
[9] collect_similar(::Array{Tuple{Operation,Operation},1}, ::Base.Generator{Array{Tuple{Operation,Operation},1},Petri.var"#39#46"{Petri.var"#updateblock#40"{Symbol},Petri.var"#poolconditions#43"{Petri.var"#head#42"}}}) at ./array.jl:607
[10] map at ./abstractarray.jl:2072 [inlined]
[11] Δ at /home/pkgeval/.julia/packages/Petri/1JIxf/src/stochastic.jl:79 [inlined]
[12] Δ at /home/pkgeval/.julia/packages/Petri/1JIxf/src/stochastic.jl:2 [inlined]
[13] funckit(::Model{Any,Array{Operation,1},Array{Tuple{Operation,Operation},1},Array{Any,1},Array{Any,1}}) at /home/pkgeval/.julia/packages/Petri/1JIxf/src/stochastic.jl:147
[14] top-level scope at /home/pkgeval/.julia/packages/Petri/1JIxf/test/stochastic.jl:17
[15] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1113
[16] top-level scope at /home/pkgeval/.julia/packages/Petri/1JIxf/test/stochastic.jl:14
[17] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1113
[18] top-level scope at /home/pkgeval/.julia/packages/Petri/1JIxf/test/stochastic.jl:12
[19] include(::String) at ./client.jl:439
[20] top-level scope at /home/pkgeval/.julia/packages/Petri/1JIxf/test/runtests.jl:20
[21] include(::String) at ./client.jl:439
[22] top-level scope at none:6
[23] eval(::Module, ::Any) at ./boot.jl:331
[24] exec_options(::Base.JLOptions) at ./client.jl:264
[25] _start() at ./client.jl:484
MacroTools.striplines(q) = quote
begin
end
begin
E
I
end
end
SEIRS: Error During Test at /home/pkgeval/.julia/packages/Petri/1JIxf/test/stochastic.jl:24
Got exception outside of a @test
type Symbol has no field head
Stacktrace:
[1] getproperty(::Symbol, ::Symbol) at ./Base.jl:33
[2] (::Petri.var"#poolconditions#43"{Petri.var"#head#42"})(::Symbol) at /home/pkgeval/.julia/packages/Petri/1JIxf/src/stochastic.jl:62
[3] |>(::Symbol, ::Petri.var"#poolconditions#43"{Petri.var"#head#42"}) at ./operators.jl:823
[4] (::Petri.var"#39#46"{Petri.var"#updateblock#40"{Symbol},Petri.var"#poolconditions#43"{Petri.var"#head#42"}})(::Tuple{Operation,Operation}) at /home/pkgeval/.julia/packages/Petri/1JIxf/src/stochastic.jl:86
[5] iterate at ./generator.jl:47 [inlined]
[6] collect_to! at ./array.jl:710 [inlined]
[7] collect_to_with_first!(::Array{Expr,1}, ::Expr, ::Base.Generator{Array{Tuple{Operation,Operation},1},Petri.var"#39#46"{Petri.var"#updateblock#40"{Symbol},Petri.var"#poolconditions#43"{Petri.var"#head#42"}}}, ::Int64) at ./array.jl:689
[8] _collect(::Array{Tuple{Operation,Operation},1}, ::Base.Generator{Array{Tuple{Operation,Operation},1},Petri.var"#39#46"{Petri.var"#updateblock#40"{Symbol},Petri.var"#poolconditions#43"{Petri.var"#head#42"}}}, ::Base.EltypeUnknown, ::Base.HasShape{1}) at ./array.jl:683
[9] collect_similar(::Array{Tuple{Operation,Operation},1}, ::Base.Generator{Array{Tuple{Operation,Operation},1},Petri.var"#39#46"{Petri.var"#updateblock#40"{Symbol},Petri.var"#poolconditions#43"{Petri.var"#head#42"}}}) at ./array.jl:607
[10] map at ./abstractarray.jl:2072 [inlined]
[11] Δ at /home/pkgeval/.julia/packages/Petri/1JIxf/src/stochastic.jl:79 [inlined]
[12] Δ at /home/pkgeval/.julia/packages/Petri/1JIxf/src/stochastic.jl:2 [inlined]
[13] funckit(::Model{Any,Array{Operation,1},Array{Tuple{Operation,Operation},1},Array{Any,1},Array{Any,1}}) at /home/pkgeval/.julia/packages/Petri/1JIxf/src/stochastic.jl:147
[14] top-level scope at /home/pkgeval/.julia/packages/Petri/1JIxf/test/stochastic.jl:29
[15] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1113
[16] top-level scope at /home/pkgeval/.julia/packages/Petri/1JIxf/test/stochastic.jl:25
[17] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1113
[18] top-level scope at /home/pkgeval/.julia/packages/Petri/1JIxf/test/stochastic.jl:12
[19] include(::String) at ./client.jl:439
[20] top-level scope at /home/pkgeval/.julia/packages/Petri/1JIxf/test/runtests.jl:20
[21] include(::String) at ./client.jl:439
[22] top-level scope at none:6
[23] eval(::Module, ::Any) at ./boot.jl:331
[24] exec_options(::Base.JLOptions) at ./client.jl:264
[25] _start() at ./client.jl:484
Test Summary: | Error Total
Stochastic Simulation | 2 2
SIR | 1 1
SEIRS | 1 1
ERROR: LoadError: LoadError: Some tests did not pass: 0 passed, 0 failed, 2 errored, 0 broken.
in expression starting at /home/pkgeval/.julia/packages/Petri/1JIxf/test/stochastic.jl:11
in expression starting at /home/pkgeval/.julia/packages/Petri/1JIxf/test/runtests.jl:20
err = ProcessFailedException(Base.Process[Process(`/opt/julia/bin/julia -Cnative -J/opt/julia/lib/julia/sys.so -g1 --code-coverage=none --color=no --compiled-modules=yes --check-bounds=yes --inline=yes --startup-file=no --track-allocation=none --eval 'append!(empty!(Base.DEPOT_PATH), ["/home/pkgeval/.julia", "/opt/julia/local/share/julia", "/opt/julia/share/julia", "/usr/local/share/julia"])
append!(empty!(Base.DL_LOAD_PATH), String[])
cd("/home/pkgeval/.julia/packages/Petri/1JIxf/test")
append!(empty!(ARGS), String[])
include("/home/pkgeval/.julia/packages/Petri/1JIxf/test/runtests.jl")
'`, ProcessExited(1))])
ERROR: Package Petri errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String,N} where N) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/Types.jl:54
[2] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/Operations.jl:1471
[3] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:313
[4] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:300
[5] #test#66 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:294 [inlined]
[6] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:294 [inlined]
[7] #test#65 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:293 [inlined]
[8] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:293 [inlined]
[9] test(::String; kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:292
[10] test(::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:292
[11] top-level scope at none:13