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1.5.0-DEV-ed177d17d6.log
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1.5.0-DEV-ed177d17d6.log
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Julia Version 1.5.0-DEV.158
Commit ed177d17d6 (2020-01-27 16:45 UTC)
Platform Info:
OS: Linux (x86_64-pc-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-8.0.1 (ORCJIT, skylake)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
Installed OpenSpecFun_jll ───── v0.5.3+1
Installed NetworkInference ──── v0.1.0
Installed SortingAlgorithms ─── v0.3.1
Installed Arpack ────────────── v0.4.0
Installed QuadGK ────────────── v2.3.1
Installed StatsFuns ─────────── v0.9.3
Installed BinaryProvider ────── v0.5.8
Installed Distributions ─────── v0.22.3
Installed Arpack_jll ────────── v3.5.0+2
Installed OpenBLAS_jll ──────── v0.3.7+4
Installed OrderedCollections ── v1.1.0
Installed Missings ──────────── v0.4.3
Installed SpecialFunctions ──── v0.9.0
Installed StatsBase ─────────── v0.32.0
Installed DataStructures ────── v0.17.9
Installed InformationMeasures ─ v0.3.0
Installed DataAPI ───────────── v1.1.0
Installed Rmath ─────────────── v0.6.0
Installed PDMats ────────────── v0.9.11
Installed FillArrays ────────── v0.8.4
Installed Discretizers ──────── v3.1.0
Updating `~/.julia/environments/v1.5/Project.toml`
[6b44d3db] + NetworkInference v0.1.0
Updating `~/.julia/environments/v1.5/Manifest.toml`
[7d9fca2a] + Arpack v0.4.0
[68821587] + Arpack_jll v3.5.0+2
[b99e7846] + BinaryProvider v0.5.8
[9a962f9c] + DataAPI v1.1.0
[864edb3b] + DataStructures v0.17.9
[6e83dbb3] + Discretizers v3.1.0
[31c24e10] + Distributions v0.22.3
[1a297f60] + FillArrays v0.8.4
[96684042] + InformationMeasures v0.3.0
[e1d29d7a] + Missings v0.4.3
[6b44d3db] + NetworkInference v0.1.0
[4536629a] + OpenBLAS_jll v0.3.7+4
[efe28fd5] + OpenSpecFun_jll v0.5.3+1
[bac558e1] + OrderedCollections v1.1.0
[90014a1f] + PDMats v0.9.11
[1fd47b50] + QuadGK v2.3.1
[79098fc4] + Rmath v0.6.0
[a2af1166] + SortingAlgorithms v0.3.1
[276daf66] + SpecialFunctions v0.9.0
[2913bbd2] + StatsBase v0.32.0
[4c63d2b9] + StatsFuns v0.9.3
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[4607b0f0] + SuiteSparse
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building Rmath → `~/.julia/packages/Rmath/BoBag/deps/build.log`
Updating `/tmp/jl_hd7Gej/Project.toml`
[no changes]
Updating `/tmp/jl_hd7Gej/Manifest.toml`
[no changes]
Testing NetworkInference
Updating `/tmp/jl_Wic48Q/Project.toml`
[no changes]
Updating `/tmp/jl_Wic48Q/Manifest.toml`
[no changes]
Running sandbox
Status `/tmp/jl_Wic48Q/Project.toml`
[31c24e10] Distributions v0.22.3
[96684042] InformationMeasures v0.3.0
[6b44d3db] NetworkInference v0.1.0
[8bb1440f] DelimitedFiles
[8ba89e20] Distributed
[44cfe95a] Pkg
[1a1011a3] SharedArrays
[8dfed614] Test
ERROR: LoadError: LoadError: UndefVarError: installed not defined
Stacktrace:
[1] getproperty(::Module, ::Symbol) at ./Base.jl:26
[2] top-level scope at /home/pkgeval/.julia/packages/NetworkInference/z8pnG/src/empirical_bayes_glue.jl:5
[3] include(::Module, ::String) at ./Base.jl:377
[4] include(::String) at /home/pkgeval/.julia/packages/NetworkInference/z8pnG/src/NetworkInference.jl:1
[5] top-level scope at /home/pkgeval/.julia/packages/NetworkInference/z8pnG/src/NetworkInference.jl:31
[6] include(::Module, ::String) at ./Base.jl:377
[7] top-level scope at none:2
[8] eval at ./boot.jl:331 [inlined]
[9] eval(::Expr) at ./client.jl:449
[10] top-level scope at ./none:3
in expression starting at /home/pkgeval/.julia/packages/NetworkInference/z8pnG/src/empirical_bayes_glue.jl:5
in expression starting at /home/pkgeval/.julia/packages/NetworkInference/z8pnG/src/NetworkInference.jl:31
ERROR: LoadError: Failed to precompile NetworkInference [6b44d3db-2bc5-5ac3-b70f-26aa69b1b11b] to /home/pkgeval/.julia/compiled/v1.5/NetworkInference/WOYob_rMSC6.ji.
Stacktrace:
[1] error(::String) at ./error.jl:33
[2] compilecache(::Base.PkgId, ::String) at ./loading.jl:1270
[3] _require(::Base.PkgId) at ./loading.jl:1029
[4] require(::Base.PkgId) at ./loading.jl:927
[5] require(::Module, ::Symbol) at ./loading.jl:922
[6] include(::String) at ./client.jl:439
[7] top-level scope at none:6
in expression starting at /home/pkgeval/.julia/packages/NetworkInference/z8pnG/test/runtests.jl:1
err = ProcessFailedException(Base.Process[Process(`/opt/julia/bin/julia -Cnative -J/opt/julia/lib/julia/sys.so -g1 --code-coverage=none --color=no --compiled-modules=yes --check-bounds=yes --inline=yes --startup-file=no --track-allocation=none --eval 'append!(empty!(Base.DEPOT_PATH), ["/home/pkgeval/.julia", "/opt/julia/local/share/julia", "/opt/julia/share/julia", "/usr/local/share/julia"])
append!(empty!(Base.DL_LOAD_PATH), String[])
cd("/home/pkgeval/.julia/packages/NetworkInference/z8pnG/test")
append!(empty!(ARGS), String[])
include("/home/pkgeval/.julia/packages/NetworkInference/z8pnG/test/runtests.jl")
'`, ProcessExited(1))])
ERROR: Package NetworkInference errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String,N} where N) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/Types.jl:54
[2] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/Operations.jl:1471
[3] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:313
[4] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:300
[5] #test#66 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:294 [inlined]
[6] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:294 [inlined]
[7] #test#65 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:293 [inlined]
[8] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:293 [inlined]
[9] test(::String; kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:292
[10] test(::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:292
[11] top-level scope at none:13