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1.5.0-DEV-ed177d17d6.log
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Julia Version 1.5.0-DEV.158
Commit ed177d17d6 (2020-01-27 16:45 UTC)
Platform Info:
OS: Linux (x86_64-pc-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-8.0.1 (ORCJIT, skylake)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
Installed SortingAlgorithms ─── v0.3.1
Installed OpenSpecFun_jll ───── v0.5.3+1
Installed OffsetArrays ──────── v1.0.2
Installed IterTools ─────────── v1.3.0
Installed ColorVectorSpace ──── v0.8.2
Installed ImageAxes ─────────── v0.6.2
Installed BinaryProvider ────── v0.5.8
Installed OrderedCollections ── v1.1.0
Installed Graphics ──────────── v1.0.1
Installed ConstructionBase ──── v1.0.0
Installed StatsBase ─────────── v0.32.0
Installed SpecialFunctions ──── v0.9.0
Installed ColorTypes ────────── v0.9.1
Installed DataStructures ────── v0.17.9
Installed Unitful ───────────── v1.0.0
Installed MappedArrays ──────── v0.2.2
Installed Missings ──────────── v0.4.3
Installed FixedPointNumbers ─── v0.7.1
Installed AxisArrays ────────── v0.3.3
Installed PaddedViews ───────── v0.5.1
Installed StaticArrays ──────── v0.12.1
Installed DataAPI ───────────── v1.1.0
Installed FreeType ──────────── v2.1.1
Installed MacroTools ────────── v0.5.3
Installed RangeArrays ───────── v0.3.2
Installed NaNMath ───────────── v0.3.3
Installed Requires ──────────── v1.0.0
Installed FreeTypeAbstraction ─ v0.4.2
Installed IntervalSets ──────── v0.3.2
Installed SimpleTraits ──────── v0.9.1
Installed Colors ────────────── v0.11.2
Installed Reexport ──────────── v0.2.0
Installed ImageCore ─────────── v0.8.11
Installed ImageMetadata ─────── v0.9.0
Installed IndirectArrays ────── v0.5.1
Installed ImageMorphology ───── v0.2.5
Installed MicroscopyLabels ──── v0.1.0
Updating `~/.julia/environments/v1.5/Project.toml`
[85a02ca2] + MicroscopyLabels v0.1.0
Updating `~/.julia/environments/v1.5/Manifest.toml`
[39de3d68] + AxisArrays v0.3.3
[b99e7846] + BinaryProvider v0.5.8
[3da002f7] + ColorTypes v0.9.1
[c3611d14] + ColorVectorSpace v0.8.2
[5ae59095] + Colors v0.11.2
[187b0558] + ConstructionBase v1.0.0
[9a962f9c] + DataAPI v1.1.0
[864edb3b] + DataStructures v0.17.9
[53c48c17] + FixedPointNumbers v0.7.1
[b38be410] + FreeType v2.1.1
[663a7486] + FreeTypeAbstraction v0.4.2
[a2bd30eb] + Graphics v1.0.1
[2803e5a7] + ImageAxes v0.6.2
[a09fc81d] + ImageCore v0.8.11
[bc367c6b] + ImageMetadata v0.9.0
[787d08f9] + ImageMorphology v0.2.5
[9b13fd28] + IndirectArrays v0.5.1
[8197267c] + IntervalSets v0.3.2
[c8e1da08] + IterTools v1.3.0
[1914dd2f] + MacroTools v0.5.3
[dbb5928d] + MappedArrays v0.2.2
[85a02ca2] + MicroscopyLabels v0.1.0
[e1d29d7a] + Missings v0.4.3
[77ba4419] + NaNMath v0.3.3
[6fe1bfb0] + OffsetArrays v1.0.2
[efe28fd5] + OpenSpecFun_jll v0.5.3+1
[bac558e1] + OrderedCollections v1.1.0
[5432bcbf] + PaddedViews v0.5.1
[b3c3ace0] + RangeArrays v0.3.2
[189a3867] + Reexport v0.2.0
[ae029012] + Requires v1.0.0
[699a6c99] + SimpleTraits v0.9.1
[a2af1166] + SortingAlgorithms v0.3.1
[276daf66] + SpecialFunctions v0.9.0
[90137ffa] + StaticArrays v0.12.1
[2913bbd2] + StatsBase v0.32.0
[1986cc42] + Unitful v1.0.0
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8ba89e20] + Distributed
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building FreeType → `~/.julia/packages/FreeType/2dE5w/deps/build.log`
Updating `/tmp/jl_HMvCCn/Project.toml`
[no changes]
Updating `/tmp/jl_HMvCCn/Manifest.toml`
[no changes]
Testing MicroscopyLabels
Installed Parsers ───────────── v0.3.10
Installed DocStringExtensions ─ v0.8.1
Installed JSON ──────────────── v0.21.0
Installed Documenter ────────── v0.24.4
Updating `/tmp/jl_64lb29/Project.toml`
[e30172f5] + Documenter v0.24.4
Updating `/tmp/jl_64lb29/Manifest.toml`
[ffbed154] + DocStringExtensions v0.8.1
[e30172f5] + Documenter v0.24.4
[682c06a0] + JSON v0.21.0
[69de0a69] + Parsers v0.3.10
[a63ad114] + Mmap
Running sandbox
Status `/tmp/jl_64lb29/Project.toml`
[39de3d68] AxisArrays v0.3.3
[e30172f5] Documenter v0.24.4
[bc367c6b] ImageMetadata v0.9.0
[787d08f9] ImageMorphology v0.2.5
[85a02ca2] MicroscopyLabels v0.1.0
[1986cc42] Unitful v1.0.0
[8dfed614] Test
[ Info: SetupBuildDirectory: setting up build directory.
[ Info: Doctest: running doctests.
[ Info: Skipped ExpandTemplates step (doctest only).
[ Info: Skipped CrossReferences step (doctest only).
[ Info: Skipped CheckDocument step (doctest only).
[ Info: Skipped Populate step (doctest only).
[ Info: Skipped RenderDocument step (doctest only).
Test Summary: | Pass Total
Doctests: MicroscopyLabels | 1 1
WARNING: both ImageAxes and ImageMetadata export "data"; uses of it in module MicroscopyLabels must be qualified
ImageMetadata: Error During Test at /home/pkgeval/.julia/packages/MicroscopyLabels/aaXqB/test/runtests.jl:31
Got exception outside of a @test
UndefVarError: data not defined
Stacktrace:
[1] timestamp!(::ImageMeta{Float64,3,AxisArray{Float64,3,Array{Float64,3},Tuple{Axis{:x,UnitRange{Int64}},Axis{:y,UnitRange{Int64}},Axis{:time,UnitRange{Int64}}}},Dict{Symbol,Any}}; units::Unitful.FreeUnits{(s,),𝐓,nothing}) at /home/pkgeval/.julia/packages/MicroscopyLabels/aaXqB/src/MicroscopyLabels.jl:61
[2] timestamp!(::ImageMeta{Float64,3,AxisArray{Float64,3,Array{Float64,3},Tuple{Axis{:x,UnitRange{Int64}},Axis{:y,UnitRange{Int64}},Axis{:time,UnitRange{Int64}}}},Dict{Symbol,Any}}) at /home/pkgeval/.julia/packages/MicroscopyLabels/aaXqB/src/MicroscopyLabels.jl:61
[3] top-level scope at /home/pkgeval/.julia/packages/MicroscopyLabels/aaXqB/test/runtests.jl:33
[4] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1113
[5] top-level scope at /home/pkgeval/.julia/packages/MicroscopyLabels/aaXqB/test/runtests.jl:32
[6] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1113
[7] top-level scope at /home/pkgeval/.julia/packages/MicroscopyLabels/aaXqB/test/runtests.jl:11
[8] include(::String) at ./client.jl:439
[9] top-level scope at none:6
[10] eval(::Module, ::Any) at ./boot.jl:331
[11] exec_options(::Base.JLOptions) at ./client.jl:264
[12] _start() at ./client.jl:484
Test Summary: | Pass Error Total
timestamps | 2 1 3
No time axis | 1 1
4+ dimensions | 1 1
ImageMetadata | 1 1
ERROR: LoadError: Some tests did not pass: 2 passed, 0 failed, 1 errored, 0 broken.
in expression starting at /home/pkgeval/.julia/packages/MicroscopyLabels/aaXqB/test/runtests.jl:9
err = ProcessFailedException(Base.Process[Process(`/opt/julia/bin/julia -Cnative -J/opt/julia/lib/julia/sys.so -g1 --code-coverage=none --color=no --compiled-modules=yes --check-bounds=yes --inline=yes --startup-file=no --track-allocation=none --eval 'append!(empty!(Base.DEPOT_PATH), ["/home/pkgeval/.julia", "/opt/julia/local/share/julia", "/opt/julia/share/julia", "/usr/local/share/julia"])
append!(empty!(Base.DL_LOAD_PATH), String[])
cd("/home/pkgeval/.julia/packages/MicroscopyLabels/aaXqB/test")
append!(empty!(ARGS), String[])
include("/home/pkgeval/.julia/packages/MicroscopyLabels/aaXqB/test/runtests.jl")
'`, ProcessExited(1))])
ERROR: Package MicroscopyLabels errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String,N} where N) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/Types.jl:54
[2] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/Operations.jl:1471
[3] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:313
[4] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:300
[5] #test#66 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:294 [inlined]
[6] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:294 [inlined]
[7] #test#65 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:293 [inlined]
[8] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:293 [inlined]
[9] test(::String; kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:292
[10] test(::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:292
[11] top-level scope at none:13