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1.5.0-DEV-ed177d17d6.log
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Julia Version 1.5.0-DEV.158
Commit ed177d17d6 (2020-01-27 16:45 UTC)
Platform Info:
OS: Linux (x86_64-pc-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-8.0.1 (ORCJIT, skylake)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
Installed IntelOpenMP_jll ───────────── v2018.0.3+0
Installed PositiveFactorizations ────── v0.2.3
Installed Parsers ───────────────────── v0.3.10
Installed Arpack ────────────────────── v0.4.0
Installed MCMCChains ────────────────── v1.0.2
Installed StatsFuns ─────────────────── v0.9.3
Installed KernelDensity ─────────────── v0.5.1
Installed DiffResults ───────────────── v1.0.2
Installed AbstractMCMC ──────────────── v0.3.0
Installed Distributions ─────────────── v0.22.3
Installed FFTW ──────────────────────── v1.2.0
Installed QuadGK ────────────────────── v2.3.1
Installed AbstractFFTs ──────────────── v0.5.0
Installed Optim ─────────────────────── v0.20.0
Installed SortingAlgorithms ─────────── v0.3.1
Installed Compat ────────────────────── v2.2.0
Installed ArrayInterface ────────────── v2.3.1
Installed OffsetArrays ──────────────── v1.0.2
Installed OpenBLAS_jll ──────────────── v0.3.7+4
Installed OpenSpecFun_jll ───────────── v0.5.3+1
Installed BinaryProvider ────────────── v0.5.8
Installed IterTools ─────────────────── v1.3.0
Installed Tables ────────────────────── v0.2.11
Installed Arpack_jll ────────────────── v3.5.0+2
Installed OrderedCollections ────────── v1.1.0
Installed SpecialFunctions ──────────── v0.9.0
Installed Parameters ────────────────── v0.12.0
Installed NLSolversBase ─────────────── v7.6.0
Installed IteratorInterfaceExtensions ─ v1.0.0
Installed StatsBase ─────────────────── v0.32.0
Installed CommonSubexpressions ──────── v0.2.0
Installed ForwardDiff ───────────────── v0.10.9
Installed FFTW_jll ──────────────────── v3.3.9+3
Installed Ratios ────────────────────── v0.3.1
Installed DataValueInterfaces ───────── v1.0.0
Installed DataStructures ────────────── v0.17.9
Installed Missings ──────────────────── v0.4.3
Installed LineSearches ──────────────── v7.0.1
Installed StaticArrays ──────────────── v0.12.1
Installed AxisArrays ────────────────── v0.4.1
Installed TableTraits ───────────────── v1.0.0
Installed DataAPI ───────────────────── v1.1.0
Installed JSON ──────────────────────── v0.21.0
Installed PooledArrays ──────────────── v0.5.3
Installed CategoricalArrays ─────────── v0.7.7
Installed MKL_jll ───────────────────── v2019.0.117+2
Installed InvertedIndices ───────────── v1.0.0
Installed RangeArrays ───────────────── v0.3.2
Installed WoodburyMatrices ──────────── v0.5.0
Installed ProgressMeter ─────────────── v1.2.0
Installed FillArrays ────────────────── v0.8.4
Installed FiniteDiff ────────────────── v2.1.0
Installed DataFrames ────────────────── v0.20.0
Installed DiffRules ─────────────────── v1.0.0
Installed NaNMath ───────────────────── v0.3.3
Installed AxisAlgorithms ────────────── v1.0.0
Installed Requires ──────────────────── v1.0.0
Installed PDMats ────────────────────── v0.9.11
Installed Rmath ─────────────────────── v0.6.0
Installed IntervalSets ──────────────── v0.3.2
Installed RecipesBase ───────────────── v0.7.0
Installed Reexport ──────────────────── v0.2.0
Installed Showoff ───────────────────── v0.3.1
Installed Interpolations ────────────── v0.12.7
Updating `~/.julia/environments/v1.5/Project.toml`
[c7f686f2] + MCMCChains v1.0.2
Updating `~/.julia/environments/v1.5/Manifest.toml`
[621f4979] + AbstractFFTs v0.5.0
[80f14c24] + AbstractMCMC v0.3.0
[7d9fca2a] + Arpack v0.4.0
[68821587] + Arpack_jll v3.5.0+2
[4fba245c] + ArrayInterface v2.3.1
[13072b0f] + AxisAlgorithms v1.0.0
[39de3d68] + AxisArrays v0.4.1
[b99e7846] + BinaryProvider v0.5.8
[324d7699] + CategoricalArrays v0.7.7
[bbf7d656] + CommonSubexpressions v0.2.0
[34da2185] + Compat v2.2.0
[9a962f9c] + DataAPI v1.1.0
[a93c6f00] + DataFrames v0.20.0
[864edb3b] + DataStructures v0.17.9
[e2d170a0] + DataValueInterfaces v1.0.0
[163ba53b] + DiffResults v1.0.2
[b552c78f] + DiffRules v1.0.0
[31c24e10] + Distributions v0.22.3
[7a1cc6ca] + FFTW v1.2.0
[f5851436] + FFTW_jll v3.3.9+3
[1a297f60] + FillArrays v0.8.4
[6a86dc24] + FiniteDiff v2.1.0
[f6369f11] + ForwardDiff v0.10.9
[1d5cc7b8] + IntelOpenMP_jll v2018.0.3+0
[a98d9a8b] + Interpolations v0.12.7
[8197267c] + IntervalSets v0.3.2
[41ab1584] + InvertedIndices v1.0.0
[c8e1da08] + IterTools v1.3.0
[82899510] + IteratorInterfaceExtensions v1.0.0
[682c06a0] + JSON v0.21.0
[5ab0869b] + KernelDensity v0.5.1
[d3d80556] + LineSearches v7.0.1
[c7f686f2] + MCMCChains v1.0.2
[856f044c] + MKL_jll v2019.0.117+2
[e1d29d7a] + Missings v0.4.3
[d41bc354] + NLSolversBase v7.6.0
[77ba4419] + NaNMath v0.3.3
[6fe1bfb0] + OffsetArrays v1.0.2
[4536629a] + OpenBLAS_jll v0.3.7+4
[efe28fd5] + OpenSpecFun_jll v0.5.3+1
[429524aa] + Optim v0.20.0
[bac558e1] + OrderedCollections v1.1.0
[90014a1f] + PDMats v0.9.11
[d96e819e] + Parameters v0.12.0
[69de0a69] + Parsers v0.3.10
[2dfb63ee] + PooledArrays v0.5.3
[85a6dd25] + PositiveFactorizations v0.2.3
[92933f4c] + ProgressMeter v1.2.0
[1fd47b50] + QuadGK v2.3.1
[b3c3ace0] + RangeArrays v0.3.2
[c84ed2f1] + Ratios v0.3.1
[3cdcf5f2] + RecipesBase v0.7.0
[189a3867] + Reexport v0.2.0
[ae029012] + Requires v1.0.0
[79098fc4] + Rmath v0.6.0
[992d4aef] + Showoff v0.3.1
[a2af1166] + SortingAlgorithms v0.3.1
[276daf66] + SpecialFunctions v0.9.0
[90137ffa] + StaticArrays v0.12.1
[2913bbd2] + StatsBase v0.32.0
[4c63d2b9] + StatsFuns v0.9.3
[3783bdb8] + TableTraits v1.0.0
[bd369af6] + Tables v0.2.11
[efce3f68] + WoodburyMatrices v0.5.0
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[9fa8497b] + Future
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[4607b0f0] + SuiteSparse
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building FFTW ─→ `~/.julia/packages/FFTW/qqcBj/deps/build.log`
Updating `/tmp/jl_WPpQkv/Project.toml`
[no changes]
Updating `/tmp/jl_WPpQkv/Manifest.toml`
[no changes]
Building Rmath → `~/.julia/packages/Rmath/BoBag/deps/build.log`
Updating `/tmp/jl_7iopZU/Project.toml`
[no changes]
Updating `/tmp/jl_7iopZU/Manifest.toml`
[no changes]
Testing MCMCChains
Installed Combinatorics ───── v1.0.0
Installed ZygoteRules ─────── v0.2.0
Installed StatsPlots ──────── v0.12.0
Installed DistributionsAD ─── v0.1.1
Installed PlotUtils ───────── v0.6.2
Installed GeometryTypes ───── v0.7.7
Installed Tracker ─────────── v0.2.6
Installed LazyArrays ──────── v0.15.0
Installed Contour ─────────── v0.5.1
Installed Measures ────────── v0.3.1
Installed AdvancedHMC ─────── v0.2.7
Installed Distances ───────── v0.8.2
Installed ColorTypes ──────── v0.9.1
Installed NearestNeighbors ── v0.4.4
Installed NNlib ───────────── v0.6.4
Installed DataValues ──────── v0.4.13
Installed Turing ──────────── v0.7.1
Installed MappedArrays ────── v0.2.2
Installed ArrayLayouts ────── v0.1.5
Installed Observables ─────── v0.2.3
Installed FiniteDifferences ─ v0.9.1
Installed Polynomials ─────── v0.6.0
Installed FixedPointNumbers ─ v0.7.1
Installed Zygote ──────────── v0.4.6
Installed Bijectors ───────── v0.5.2
Installed ArgCheck ────────── v1.0.1
Installed Roots ───────────── v0.8.4
Installed Plots ───────────── v0.27.1
Installed InplaceOps ──────── v0.3.0
Installed IRTools ─────────── v0.3.1
Installed PlotThemes ──────── v1.0.1
Installed Clustering ──────── v0.13.3
Installed Widgets ─────────── v0.6.2
Installed MacroTools ──────── v0.5.3
Installed FFMPEG ──────────── v0.2.4
Installed Libtask ─────────── v0.3.1
Installed Adapt ───────────── v1.0.0
Installed Colors ──────────── v0.11.2
Installed GR ──────────────── v0.46.0
Updating `/tmp/jl_qMYvBY/Project.toml`
[f3b207a7] + StatsPlots v0.12.0
[fce5fe82] + Turing v0.7.1
Updating `/tmp/jl_qMYvBY/Manifest.toml`
[79e6a3ab] + Adapt v1.0.0
[0bf59076] + AdvancedHMC v0.2.7
[dce04be8] + ArgCheck v1.0.1
[4c555306] + ArrayLayouts v0.1.5
[76274a88] + Bijectors v0.5.2
[aaaa29a8] + Clustering v0.13.3
[3da002f7] + ColorTypes v0.9.1
[5ae59095] + Colors v0.11.2
[861a8166] + Combinatorics v1.0.0
[d38c429a] + Contour v0.5.1
[e7dc6d0d] + DataValues v0.4.13
[b4f34e82] + Distances v0.8.2
[ced4e74d] + DistributionsAD v0.1.1
[c87230d0] + FFMPEG v0.2.4
[26cc04aa] + FiniteDifferences v0.9.1
[53c48c17] + FixedPointNumbers v0.7.1
[28b8d3ca] + GR v0.46.0
[4d00f742] + GeometryTypes v0.7.7
[7869d1d1] + IRTools v0.3.1
[505f98c9] + InplaceOps v0.3.0
[5078a376] + LazyArrays v0.15.0
[6f1fad26] + Libtask v0.3.1
[1914dd2f] + MacroTools v0.5.3
[dbb5928d] + MappedArrays v0.2.2
[442fdcdd] + Measures v0.3.1
[872c559c] + NNlib v0.6.4
[b8a86587] + NearestNeighbors v0.4.4
[510215fc] + Observables v0.2.3
[ccf2f8ad] + PlotThemes v1.0.1
[995b91a9] + PlotUtils v0.6.2
[91a5bcdd] + Plots v0.27.1
[f27b6e38] + Polynomials v0.6.0
[f2b01f46] + Roots v0.8.4
[f3b207a7] + StatsPlots v0.12.0
[9f7883ad] + Tracker v0.2.6
[fce5fe82] + Turing v0.7.1
[cc8bc4a8] + Widgets v0.6.2
[e88e6eb3] + Zygote v0.4.6
[700de1a5] + ZygoteRules v0.2.0
Building NNlib ──→ `~/.julia/packages/NNlib/3krvM/deps/build.log`
Updating `/tmp/jl_Gx7nym/Project.toml`
[no changes]
Updating `/tmp/jl_Gx7nym/Manifest.toml`
[no changes]
Building GR ─────→ `~/.julia/packages/GR/NSt7D/deps/build.log`
Updating `/tmp/jl_5AYeXM/Project.toml`
[no changes]
Updating `/tmp/jl_5AYeXM/Manifest.toml`
[no changes]
Building FFMPEG ─→ `~/.julia/packages/FFMPEG/guN1x/deps/build.log`
Updating `/tmp/jl_E3D8cl/Project.toml`
[no changes]
Updating `/tmp/jl_E3D8cl/Manifest.toml`
[no changes]
Building Plots ──→ `~/.julia/packages/Plots/WwFyB/deps/build.log`
Updating `/tmp/jl_zcTE6F/Project.toml`
[no changes]
Updating `/tmp/jl_zcTE6F/Manifest.toml`
[no changes]
Building Libtask → `~/.julia/packages/Libtask/RjRkK/deps/build.log`
Updating `/tmp/jl_AMxHD2/Project.toml`
[no changes]
Updating `/tmp/jl_AMxHD2/Manifest.toml`
[no changes]
Running sandbox
Status `/tmp/jl_qMYvBY/Project.toml`
[80f14c24] AbstractMCMC v0.3.0
[39de3d68] AxisArrays v0.4.1
[a93c6f00] DataFrames v0.20.0
[31c24e10] Distributions v0.22.3
[5ab0869b] KernelDensity v0.5.1
[c7f686f2] MCMCChains v1.0.2
[3cdcf5f2] RecipesBase v0.7.0
[992d4aef] Showoff v0.3.1
[276daf66] SpecialFunctions v0.9.0
[2913bbd2] StatsBase v0.32.0
[f3b207a7] StatsPlots v0.12.0
[fce5fe82] Turing v0.7.1
[37e2e46d] LinearAlgebra
[9a3f8284] Random
[9e88b42a] Serialization
[10745b16] Statistics
[8dfed614] Test
QStandardPaths: XDG_RUNTIME_DIR not set, defaulting to '/tmp/runtime-pkgeval'
┌ Warning: Section mapping does not contain all parameter names, ["Param2", "Param3", "Param4"] assigned to :parameters.
└ @ MCMCChains ~/.julia/packages/MCMCChains/YabhG/src/chains.jl:596
Building Libtask → `~/.julia/packages/Libtask/RjRkK/deps/build.log`
Updating `/tmp/jl_F7w5NJ/Project.toml`
[no changes]
Updating `/tmp/jl_F7w5NJ/Manifest.toml`
[no changes]
ERROR: LoadError: LoadError: UndefVarError: libtask_v1_3 not defined
Stacktrace:
[1] top-level scope at /home/pkgeval/.julia/packages/Libtask/RjRkK/src/taskcopy.jl:10
[2] include(::Module, ::String) at ./Base.jl:377
[3] include(::String) at /home/pkgeval/.julia/packages/Libtask/RjRkK/src/Libtask.jl:1
[4] top-level scope at /home/pkgeval/.julia/packages/Libtask/RjRkK/src/Libtask.jl:11
[5] include(::Module, ::String) at ./Base.jl:377
[6] top-level scope at none:2
[7] eval at ./boot.jl:331 [inlined]
[8] eval(::Expr) at ./client.jl:449
[9] top-level scope at ./none:3
in expression starting at /home/pkgeval/.julia/packages/Libtask/RjRkK/src/taskcopy.jl:3
in expression starting at /home/pkgeval/.julia/packages/Libtask/RjRkK/src/Libtask.jl:11
ERROR: LoadError: Failed to precompile Libtask [6f1fad26-d15e-5dc8-ae53-837a1d7b8c9f] to /home/pkgeval/.julia/compiled/v1.5/Libtask/KIaXx_c2jaV.ji.
Stacktrace:
[1] error(::String) at ./error.jl:33
[2] compilecache(::Base.PkgId, ::String) at ./loading.jl:1270
[3] _require(::Base.PkgId) at ./loading.jl:1029
[4] require(::Base.PkgId) at ./loading.jl:927
[5] require(::Module, ::Symbol) at ./loading.jl:922
[6] include(::Module, ::String) at ./Base.jl:377
[7] top-level scope at none:2
[8] eval at ./boot.jl:331 [inlined]
[9] eval(::Expr) at ./client.jl:449
[10] top-level scope at ./none:3
in expression starting at /home/pkgeval/.julia/packages/Turing/xFzfF/src/Turing.jl:14
MCMCChains: Error During Test at /home/pkgeval/.julia/packages/MCMCChains/YabhG/test/runtests.jl:3
Got exception outside of a @test
LoadError: Failed to precompile Turing [fce5fe82-541a-59a6-adf8-730c64b5f9a0] to /home/pkgeval/.julia/compiled/v1.5/Turing/gm4QC_c2jaV.ji.
Stacktrace:
[1] error(::String) at ./error.jl:33
[2] compilecache(::Base.PkgId, ::String) at ./loading.jl:1270
[3] _require(::Base.PkgId) at ./loading.jl:1029
[4] require(::Base.PkgId) at ./loading.jl:927
[5] require(::Module, ::Symbol) at ./loading.jl:922
[6] include(::String) at ./client.jl:439
[7] top-level scope at /home/pkgeval/.julia/packages/MCMCChains/YabhG/test/runtests.jl:17
[8] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1113
[9] top-level scope at /home/pkgeval/.julia/packages/MCMCChains/YabhG/test/runtests.jl:5
[10] include(::String) at ./client.jl:439
[11] top-level scope at none:6
[12] eval(::Module, ::Any) at ./boot.jl:331
[13] exec_options(::Base.JLOptions) at ./client.jl:264
[14] _start() at ./client.jl:484
in expression starting at /home/pkgeval/.julia/packages/MCMCChains/YabhG/test/serialization_tests.jl:1
Test Summary: | Pass Error Total
MCMCChains | 72 1 73
Plotting tests | 13 13
basic chains functions | 21 21
function tests | 8 8
vector of vectors | 2 2
sorting | 2 2
concatenation tests | 15 15
utils | 1 1
stats | 1 1
diagnostic functions | 8 8
describe sections | 1 1
ERROR: LoadError: Some tests did not pass: 72 passed, 0 failed, 1 errored, 0 broken.
in expression starting at /home/pkgeval/.julia/packages/MCMCChains/YabhG/test/runtests.jl:3
err = ProcessFailedException(Base.Process[Process(`/opt/julia/bin/julia -Cnative -J/opt/julia/lib/julia/sys.so -g1 --code-coverage=none --color=no --compiled-modules=yes --check-bounds=yes --inline=yes --startup-file=no --track-allocation=none --eval 'append!(empty!(Base.DEPOT_PATH), ["/home/pkgeval/.julia", "/opt/julia/local/share/julia", "/opt/julia/share/julia", "/usr/local/share/julia"])
append!(empty!(Base.DL_LOAD_PATH), String[])
cd("/home/pkgeval/.julia/packages/MCMCChains/YabhG/test")
append!(empty!(ARGS), String[])
include("/home/pkgeval/.julia/packages/MCMCChains/YabhG/test/runtests.jl")
'`, ProcessExited(1))])
ERROR: Package MCMCChains errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String,N} where N) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/Types.jl:54
[2] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/Operations.jl:1471
[3] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:313
[4] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:300
[5] #test#66 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:294 [inlined]
[6] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:294 [inlined]
[7] #test#65 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:293 [inlined]
[8] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:293 [inlined]
[9] test(::String; kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:292
[10] test(::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:292
[11] top-level scope at none:13