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1.5.0-DEV-ed177d17d6.log
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Julia Version 1.5.0-DEV.158
Commit ed177d17d6 (2020-01-27 16:45 UTC)
Platform Info:
OS: Linux (x86_64-pc-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-8.0.1 (ORCJIT, skylake)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
Installed SortingAlgorithms ──── v0.3.1
Installed Parsers ────────────── v0.3.10
Installed Blosc ──────────────── v0.5.1
Installed Arpack ─────────────── v0.4.0
Installed QuadGK ─────────────── v2.3.1
Installed StatsFuns ──────────── v0.9.3
Installed FlashWeave ─────────── v0.15.0
Installed Distributions ──────── v0.21.12
Installed Compat ─────────────── v2.2.0
Installed CMakeWrapper ───────── v0.2.3
Installed OpenSpecFun_jll ────── v0.5.3+1
Installed Combinatorics ──────── v1.0.0
Installed OpenBLAS_jll ───────── v0.3.7+4
Installed Arpack_jll ─────────── v3.5.0+2
Installed OrderedCollections ─── v1.1.0
Installed BinaryProvider ─────── v0.5.8
Installed URIParser ──────────── v0.4.0
Installed Parameters ─────────── v0.12.0
Installed SpecialFunctions ───── v0.9.0
Installed StatsBase ──────────── v0.32.0
Installed CodecZlib ──────────── v0.6.0
Installed FileIO ─────────────── v1.2.1
Installed DataStructures ─────── v0.17.9
Installed Polynomials ────────── v0.6.0
Installed BinDeps ────────────── v1.0.0
Installed Missings ───────────── v0.4.3
Installed JLD2 ───────────────── v0.1.11
Installed Inflate ────────────── v0.1.1
Installed ArnoldiMethod ──────── v0.0.4
Installed DataAPI ────────────── v1.1.0
Installed StaticArrays ───────── v0.12.1
Installed JSON ───────────────── v0.21.0
Installed FillArrays ─────────── v0.8.4
Installed TranscodingStreams ─── v0.9.5
Installed MacroTools ─────────── v0.5.3
Installed LightGraphs ────────── v1.3.0
Installed SimpleWeightedGraphs ─ v1.1.0
Installed PDMats ─────────────── v0.9.11
Installed SimpleTraits ───────── v0.9.1
Installed Rmath ──────────────── v0.6.0
Installed CMake ──────────────── v1.1.2
Installed RecipesBase ────────── v0.7.0
Installed HDF5 ───────────────── v0.12.5
Updating `~/.julia/environments/v1.5/Project.toml`
[2be3f83a] + FlashWeave v0.15.0
Updating `~/.julia/environments/v1.5/Manifest.toml`
[ec485272] + ArnoldiMethod v0.0.4
[7d9fca2a] + Arpack v0.4.0
[68821587] + Arpack_jll v3.5.0+2
[9e28174c] + BinDeps v1.0.0
[b99e7846] + BinaryProvider v0.5.8
[a74b3585] + Blosc v0.5.1
[631607c0] + CMake v1.1.2
[d5fb7624] + CMakeWrapper v0.2.3
[944b1d66] + CodecZlib v0.6.0
[861a8166] + Combinatorics v1.0.0
[34da2185] + Compat v2.2.0
[9a962f9c] + DataAPI v1.1.0
[864edb3b] + DataStructures v0.17.9
[31c24e10] + Distributions v0.21.12
[5789e2e9] + FileIO v1.2.1
[1a297f60] + FillArrays v0.8.4
[2be3f83a] + FlashWeave v0.15.0
[f67ccb44] + HDF5 v0.12.5
[d25df0c9] + Inflate v0.1.1
[033835bb] + JLD2 v0.1.11
[682c06a0] + JSON v0.21.0
[093fc24a] + LightGraphs v1.3.0
[1914dd2f] + MacroTools v0.5.3
[e1d29d7a] + Missings v0.4.3
[4536629a] + OpenBLAS_jll v0.3.7+4
[efe28fd5] + OpenSpecFun_jll v0.5.3+1
[bac558e1] + OrderedCollections v1.1.0
[90014a1f] + PDMats v0.9.11
[d96e819e] + Parameters v0.12.0
[69de0a69] + Parsers v0.3.10
[f27b6e38] + Polynomials v0.6.0
[1fd47b50] + QuadGK v2.3.1
[3cdcf5f2] + RecipesBase v0.7.0
[79098fc4] + Rmath v0.6.0
[699a6c99] + SimpleTraits v0.9.1
[47aef6b3] + SimpleWeightedGraphs v1.1.0
[a2af1166] + SortingAlgorithms v0.3.1
[276daf66] + SpecialFunctions v0.9.0
[90137ffa] + StaticArrays v0.12.1
[2913bbd2] + StatsBase v0.32.0
[4c63d2b9] + StatsFuns v0.9.3
[3bb67fe8] + TranscodingStreams v0.9.5
[30578b45] + URIParser v0.4.0
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[4607b0f0] + SuiteSparse
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building CMake ────→ `~/.julia/packages/CMake/nSK2r/deps/build.log`
Updating `/tmp/jl_XJBABY/Project.toml`
[no changes]
Updating `/tmp/jl_XJBABY/Manifest.toml`
[no changes]
Building Blosc ────→ `~/.julia/packages/Blosc/lzFr0/deps/build.log`
Updating `/tmp/jl_2yZtbD/Project.toml`
[no changes]
Updating `/tmp/jl_2yZtbD/Manifest.toml`
[no changes]
Building CodecZlib → `~/.julia/packages/CodecZlib/5t9zO/deps/build.log`
Updating `/tmp/jl_ngIZ5b/Project.toml`
[no changes]
Updating `/tmp/jl_ngIZ5b/Manifest.toml`
[no changes]
Building Rmath ────→ `~/.julia/packages/Rmath/BoBag/deps/build.log`
Updating `/tmp/jl_4SyIv2/Project.toml`
[no changes]
Updating `/tmp/jl_4SyIv2/Manifest.toml`
[no changes]
Building HDF5 ─────→ `~/.julia/packages/HDF5/Zh9on/deps/build.log`
Updating `/tmp/jl_vqtyK6/Project.toml`
[no changes]
Updating `/tmp/jl_vqtyK6/Manifest.toml`
[no changes]
Testing FlashWeave
Updating `/tmp/jl_MjuXTz/Project.toml`
[no changes]
Updating `/tmp/jl_MjuXTz/Manifest.toml`
[no changes]
Running sandbox
Status `/tmp/jl_MjuXTz/Project.toml`
[861a8166] Combinatorics v1.0.0
[864edb3b] DataStructures v0.17.9
[31c24e10] Distributions v0.21.12
[5789e2e9] FileIO v1.2.1
[2be3f83a] FlashWeave v0.15.0
[f67ccb44] HDF5 v0.12.5
[033835bb] JLD2 v0.1.11
[682c06a0] JSON v0.21.0
[093fc24a] LightGraphs v1.3.0
[47aef6b3] SimpleWeightedGraphs v1.1.0
[2913bbd2] StatsBase v0.32.0
[ade2ca70] Dates
[8bb1440f] DelimitedFiles
[8ba89e20] Distributed
[37e2e46d] LinearAlgebra
[56ddb016] Logging
[9a3f8284] Random
[1a1011a3] SharedArrays
[2f01184e] SparseArrays
[10745b16] Statistics
[8dfed614] Test
Preparing tests
Test Summary: | Pass Total
all modules in testset | 1 1
Testing io.jl
/tmp/jl_w5XUnQ_unchecked.tsv
Test Summary: | Pass Total
networks | 4 4
Test Summary: | Pass Total
table data | 20 20
┌ Warning: jld2 support is deprecated and will be removed in future versions of FlashWeave
└ @ FlashWeave ~/.julia/packages/FlashWeave/HO8wt/src/io.jl:42
Test Summary: | Pass Total
transposed | 8 8
Test Summary: | Pass Total
string factors | 4 4
Test Summary: | Pass Total
numeric IDs | 2 2
Testing preprocessing.jl
┌ Warning: Adaptive CLR is inefficient with sparse data, using dense format
└ @ FlashWeave ~/.julia/packages/FlashWeave/HO8wt/src/preprocessing.jl:475
┌ Warning: adaptive pseudo-counts for 1 samples were lower than machine precision due to insufficient counts, removing them
└ @ FlashWeave ~/.julia/packages/FlashWeave/HO8wt/src/preprocessing.jl:125
Test Summary: | Pass Total
clr_adapt eps | 2 2
┌ Warning: Adaptive CLR is inefficient with sparse data, using dense format
└ @ FlashWeave ~/.julia/packages/FlashWeave/HO8wt/src/preprocessing.jl:475
┌ Warning: Adaptive CLR is inefficient with sparse data, using dense format
└ @ FlashWeave ~/.julia/packages/FlashWeave/HO8wt/src/preprocessing.jl:475
┌ Warning: Adaptive CLR is inefficient with sparse data, using dense format
└ @ FlashWeave ~/.julia/packages/FlashWeave/HO8wt/src/preprocessing.jl:475
┌ Warning: Adaptive CLR is inefficient with sparse data, using dense format
└ @ FlashWeave ~/.julia/packages/FlashWeave/HO8wt/src/preprocessing.jl:475
Test Summary: | Pass Total
norm per test type | 20 20
┌ Warning: Adaptive CLR is inefficient with sparse data, using dense format
└ @ FlashWeave ~/.julia/packages/FlashWeave/HO8wt/src/preprocessing.jl:475
Test Summary: | Pass Total
filter data | 12 12
Test Summary: | Pass Total
mi_nz fits fz_nz | 1 1
┌ Warning: Skipping one-hot encoding, only experts should choose this option.
└ @ FlashWeave ~/.julia/packages/FlashWeave/HO8wt/src/preprocessing.jl:345
┌ Warning: Skipping one-hot encoding, only experts should choose this option.
└ @ FlashWeave ~/.julia/packages/FlashWeave/HO8wt/src/preprocessing.jl:345
┌ Warning: Skipping one-hot encoding, only experts should choose this option.
└ @ FlashWeave ~/.julia/packages/FlashWeave/HO8wt/src/preprocessing.jl:345
┌ Warning: Skipping one-hot encoding, only experts should choose this option.
└ @ FlashWeave ~/.julia/packages/FlashWeave/HO8wt/src/preprocessing.jl:345
Test Summary: | Pass Total
meta data | 18 18
Testing contingency.jl
Test Summary: | Pass Total
dense | 4 4
Test Summary: | Pass Total
sparse | 4 4
Testing statfuns.jl
Test Summary: | Pass Total
correlation | 6 6
Test Summary: | Pass Total
mutual information | 4 4
Test Summary: | Pass Total
FDR correction | 2 2
Testing tests.jl
Test Summary: | Pass Total
mi | 3 3
Test Summary: | Pass Total
mi_nz | 3 3
Test Summary: | Pass Total
fz | 3 3
Test Summary: | Pass Total
fz_nz | 3 3
Testing misc.jl
Testing learning.jl
(this can take a couple of minutes)
Test Summary: | Pass Total
univar nbrs | 5 5
┌ Warning: 37 variables have insufficient observations (< 161 ('n_obs_min')) and will not be used for interaction prediction
└ @ FlashWeave ~/.julia/packages/FlashWeave/HO8wt/src/learning.jl:71
┌ Warning: 37 variables have insufficient observations (< 161 ('n_obs_min')) and will not be used for interaction prediction
└ @ FlashWeave ~/.julia/packages/FlashWeave/HO8wt/src/learning.jl:71
┌ Warning: 37 variables have insufficient observations (< 161 ('n_obs_min')) and will not be used for interaction prediction
└ @ FlashWeave ~/.julia/packages/FlashWeave/HO8wt/src/learning.jl:71
┌ Warning: 37 variables have insufficient observations (< 161 ('n_obs_min')) and will not be used for interaction prediction
└ @ FlashWeave ~/.julia/packages/FlashWeave/HO8wt/src/learning.jl:71
┌ Warning: 37 variables have insufficient observations (< 161 ('n_obs_min')) and will not be used for interaction prediction
└ @ FlashWeave ~/.julia/packages/FlashWeave/HO8wt/src/learning.jl:71
┌ Warning: 37 variables have insufficient observations (< 161 ('n_obs_min')) and will not be used for interaction prediction
└ @ FlashWeave ~/.julia/packages/FlashWeave/HO8wt/src/learning.jl:71
┌ Warning: Adaptive CLR is inefficient with sparse data, using dense format
└ @ FlashWeave ~/.julia/packages/FlashWeave/HO8wt/src/preprocessing.jl:475
┌ Warning: Adaptive CLR is inefficient with sparse data, using dense format
└ @ FlashWeave ~/.julia/packages/FlashWeave/HO8wt/src/preprocessing.jl:475
┌ Warning: Adaptive CLR is inefficient with sparse data, using dense format
└ @ FlashWeave ~/.julia/packages/FlashWeave/HO8wt/src/preprocessing.jl:475
┌ Warning: Adaptive CLR is inefficient with sparse data, using dense format
└ @ FlashWeave ~/.julia/packages/FlashWeave/HO8wt/src/preprocessing.jl:475
┌ Warning: Adaptive CLR is inefficient with sparse data, using dense format
└ @ FlashWeave ~/.julia/packages/FlashWeave/HO8wt/src/preprocessing.jl:475
Test Summary: | Pass Total
LGL_backend | 80 80
┌ Warning: 37 variables have insufficient observations (< 161 ('n_obs_min')) and will not be used for interaction prediction
└ @ FlashWeave ~/.julia/packages/FlashWeave/HO8wt/src/learning.jl:71
┌ Warning: 37 variables have insufficient observations (< 161 ('n_obs_min')) and will not be used for interaction prediction
└ @ FlashWeave ~/.julia/packages/FlashWeave/HO8wt/src/learning.jl:71
┌ Warning: Adaptive CLR is inefficient with sparse data, using dense format
└ @ FlashWeave ~/.julia/packages/FlashWeave/HO8wt/src/preprocessing.jl:475
Test Summary: | Pass Total
precision_32 | 4 4
┌ Warning: 37 variables have insufficient observations (< 161 ('n_obs_min')) and will not be used for interaction prediction
└ @ FlashWeave ~/.julia/packages/FlashWeave/HO8wt/src/learning.jl:71
┌ Warning: 2 factor variables with more than two categories were detected (ENV4, ENV5), splitting them into separate dummy variables (One Hot)
└ @ FlashWeave ~/.julia/packages/FlashWeave/HO8wt/src/preprocessing.jl:63
┌ Warning: 2 factor variables with more than two categories were detected (ENV4, ENV5), splitting them into separate dummy variables (One Hot)
└ @ FlashWeave ~/.julia/packages/FlashWeave/HO8wt/src/preprocessing.jl:63
┌ Warning: 2 factor variables with more than two categories were detected (ENV4, ENV5), splitting them into separate dummy variables (One Hot)
└ @ FlashWeave ~/.julia/packages/FlashWeave/HO8wt/src/preprocessing.jl:63
┌ Warning: 2 factor variables with more than two categories were detected (ENV4, ENV5), splitting them into separate dummy variables (One Hot)
└ @ FlashWeave ~/.julia/packages/FlashWeave/HO8wt/src/preprocessing.jl:63
┌ Warning: Adaptive CLR is inefficient with sparse data, using dense format
└ @ FlashWeave ~/.julia/packages/FlashWeave/HO8wt/src/preprocessing.jl:475
Finished testing (took 448s)
Testing FlashWeave tests passed