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1.5.0-DEV-ed177d17d6.log
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1.5.0-DEV-ed177d17d6.log
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Julia Version 1.5.0-DEV.158
Commit ed177d17d6 (2020-01-27 16:45 UTC)
Platform Info:
OS: Linux (x86_64-pc-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-8.0.1 (ORCJIT, skylake)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
Installed SortingAlgorithms ── v0.3.1
Installed OpenSpecFun_jll ──── v0.5.3+1
Installed Arpack ───────────── v0.4.0
Installed ApproxBayes ──────── v0.3.2
Installed QuadGK ───────────── v2.3.1
Installed StatsFuns ────────── v0.9.3
Installed BinaryProvider ───── v0.5.8
Installed Distributions ────── v0.22.3
Installed Arpack_jll ───────── v3.5.0+2
Installed OpenBLAS_jll ─────── v0.3.7+4
Installed OrderedCollections ─ v1.1.0
Installed SpecialFunctions ─── v0.9.0
Installed StatsBase ────────── v0.32.0
Installed DataStructures ───── v0.17.9
Installed Missings ─────────── v0.4.3
Installed Distances ────────── v0.8.2
Installed DataAPI ──────────── v1.1.0
Installed RecipesBase ──────── v0.7.0
Installed PDMats ───────────── v0.9.11
Installed ProgressMeter ────── v1.2.0
Installed Rmath ────────────── v0.6.0
Installed FillArrays ───────── v0.8.4
Updating `~/.julia/environments/v1.5/Project.toml`
[f5f396d3] + ApproxBayes v0.3.2
Updating `~/.julia/environments/v1.5/Manifest.toml`
[f5f396d3] + ApproxBayes v0.3.2
[7d9fca2a] + Arpack v0.4.0
[68821587] + Arpack_jll v3.5.0+2
[b99e7846] + BinaryProvider v0.5.8
[9a962f9c] + DataAPI v1.1.0
[864edb3b] + DataStructures v0.17.9
[b4f34e82] + Distances v0.8.2
[31c24e10] + Distributions v0.22.3
[1a297f60] + FillArrays v0.8.4
[e1d29d7a] + Missings v0.4.3
[4536629a] + OpenBLAS_jll v0.3.7+4
[efe28fd5] + OpenSpecFun_jll v0.5.3+1
[bac558e1] + OrderedCollections v1.1.0
[90014a1f] + PDMats v0.9.11
[92933f4c] + ProgressMeter v1.2.0
[1fd47b50] + QuadGK v2.3.1
[3cdcf5f2] + RecipesBase v0.7.0
[79098fc4] + Rmath v0.6.0
[a2af1166] + SortingAlgorithms v0.3.1
[276daf66] + SpecialFunctions v0.9.0
[2913bbd2] + StatsBase v0.32.0
[4c63d2b9] + StatsFuns v0.9.3
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[4607b0f0] + SuiteSparse
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building Rmath → `~/.julia/packages/Rmath/BoBag/deps/build.log`
Updating `/tmp/jl_dgb9bL/Project.toml`
[no changes]
Updating `/tmp/jl_dgb9bL/Manifest.toml`
[no changes]
Testing ApproxBayes
Installed Parsers ─────────── v0.3.10
Installed Measures ────────── v0.3.1
Installed FixedPointNumbers ─ v0.6.1
Installed ColorTypes ──────── v0.9.1
Installed Plots ───────────── v0.28.4
Installed PlotUtils ───────── v0.6.2
Installed Contour ─────────── v0.5.1
Installed GeometryTypes ───── v0.7.7
Installed PlotThemes ──────── v1.0.1
Installed JSON ────────────── v0.21.0
Installed Requires ────────── v1.0.0
Installed StaticArrays ────── v0.12.1
Installed FFMPEG ──────────── v0.2.4
Installed NaNMath ─────────── v0.3.3
Installed Reexport ────────── v0.2.0
Installed Showoff ─────────── v0.3.1
Installed Colors ──────────── v0.11.2
Installed GR ──────────────── v0.44.0
Updating `/tmp/jl_iAirrI/Project.toml`
[91a5bcdd] + Plots v0.28.4
Updating `/tmp/jl_iAirrI/Manifest.toml`
[3da002f7] + ColorTypes v0.9.1
[5ae59095] + Colors v0.11.2
[d38c429a] + Contour v0.5.1
[c87230d0] + FFMPEG v0.2.4
[53c48c17] + FixedPointNumbers v0.6.1
[28b8d3ca] + GR v0.44.0
[4d00f742] + GeometryTypes v0.7.7
[682c06a0] + JSON v0.21.0
[442fdcdd] + Measures v0.3.1
[77ba4419] + NaNMath v0.3.3
[69de0a69] + Parsers v0.3.10
[ccf2f8ad] + PlotThemes v1.0.1
[995b91a9] + PlotUtils v0.6.2
[91a5bcdd] + Plots v0.28.4
[189a3867] + Reexport v0.2.0
[ae029012] + Requires v1.0.0
[992d4aef] + Showoff v0.3.1
[90137ffa] + StaticArrays v0.12.1
Building GR ────→ `~/.julia/packages/GR/oiZD3/deps/build.log`
Updating `/tmp/jl_HSzpwu/Project.toml`
[no changes]
Updating `/tmp/jl_HSzpwu/Manifest.toml`
[no changes]
Building FFMPEG → `~/.julia/packages/FFMPEG/guN1x/deps/build.log`
Updating `/tmp/jl_q5D3aF/Project.toml`
[no changes]
Updating `/tmp/jl_q5D3aF/Manifest.toml`
[no changes]
Building Plots ─→ `~/.julia/packages/Plots/qZHsp/deps/build.log`
Updating `/tmp/jl_LBclyz/Project.toml`
[no changes]
Updating `/tmp/jl_LBclyz/Manifest.toml`
[no changes]
Running sandbox
Status `/tmp/jl_iAirrI/Project.toml`
[f5f396d3] ApproxBayes v0.3.2
[b4f34e82] Distances v0.8.2
[31c24e10] Distributions v0.22.3
[91a5bcdd] Plots v0.28.4
[92933f4c] ProgressMeter v1.2.0
[3cdcf5f2] RecipesBase v0.7.0
[2913bbd2] StatsBase v0.32.0
[8bb1440f] DelimitedFiles
[de0858da] Printf
[9a3f8284] Random
[10745b16] Statistics
[8dfed614] Test
Running tests ...
* test_sampling.jl ...
1.457001 seconds (10.04 M allocations: 276.560 MiB, 16.80% gc time)
1.754596 seconds (10.01 M allocations: 294.811 MiB, 2.23% gc time)
* test_parameter.jl ...
Test parameters of normal distribution are inferred correctly (mean within 5% of true value)
Preparing to run in serial on 1 processor
Check ABC rejection algorithm correctly infers parameters
Check no errors arising from plotting
Check no errors arising from printing results
#########################################
Number of simulations: 1.07e+05
Acceptance ratio: 9.32e-04
Median (95% intervals):
Parameter 1: 1.99 (1.92,2.07)
Parameter 2: 0.42 (0.30,0.54)
#########################################
Check output is written to file
Preparing to run in serial on 1 processor
Preparing to run in serial on 1 processor
Check ABC SMC algorithm correctly infers parameters
Check no errors arising from plotting
Check no errors arising from printing results
#########################################
Total number of simulations: 3.48e+03
Cumulative number of simulations = [100, 453, 738, 1225, 1584, 2203, 2760, 3478]
Acceptance ratio: 2.88e-02
Tolerance schedule = [1.0, 0.65, 0.35, 0.26, 0.15, 0.09, 0.06, 0.05]
Median (95% intervals):
Parameter 1: 1.99 (1.95,2.04)
Parameter 2: 0.40 (0.35,0.46)
#########################################
Check output is written to file
Check ABC SMC algorithm correctly infers parameters with gaussian perturbation kernel
Check ABC SMC is more efficient than ABC rejection
Preparing to run in serial on 1 processor
Preparing to run in serial on 1 processor
Preparing to run in serial on 1 processor
┌ Warning: Only accepted 0 particles with ϵ < 0.1.
│ You may want to increase ϵ or increase maxiterations.
│ Resorting to taking the 100 particles with smallest distance
└ @ ApproxBayes ~/.julia/packages/ApproxBayes/RZWxX/src/ABCalgorithm.jl:85
Preparing to run in serial on 1 processor
Preparing to run in serial on 1 processor
Total number of simulations: 2.65e+03
Cumulative number of simulations = [100, 407, 637, 949, 1356, 1727, 2174, 2650]
Acceptance ratio: 3.77e-02
Tolerance schedule = [1.0, 0.72, 0.42, 0.24, 0.16, 0.09, 0.05, 0.05]
Median (95% intervals):
Parameter 1: 1.99 (1.95,2.03)
Parameter 2: 0.39 (0.35,0.46)
Check ABC SMC algorithm with gaussian perturbation kernel correctly infers parameters
* test_parameter_parallel.jl ...
Test parameters of normal distribution are inferred correctly (mean within 5% of true value)
Preparing to run in parallel on 2 processors
Check ABC rejection algorithm correctly infers parameters
Test Failed at /home/pkgeval/.julia/packages/ApproxBayes/RZWxX/test/test_parameter_parallel.jl:33
Expression: isapprox((mean(resrejection.parameters, dims = 1))[2], p2, rtol = 0.05)
Evaluated: isapprox(0.4325226704350862, 0.4; rtol = 0.05)
ERROR: LoadError: LoadError: There was an error during testing
in expression starting at /home/pkgeval/.julia/packages/ApproxBayes/RZWxX/test/test_parameter_parallel.jl:33
in expression starting at /home/pkgeval/.julia/packages/ApproxBayes/RZWxX/test/runtests.jl:13
err = ProcessFailedException(Base.Process[Process(`/opt/julia/bin/julia -Cnative -J/opt/julia/lib/julia/sys.so -g1 --code-coverage=none --color=no --compiled-modules=yes --check-bounds=yes --inline=yes --startup-file=no --track-allocation=none --eval 'append!(empty!(Base.DEPOT_PATH), ["/home/pkgeval/.julia", "/opt/julia/local/share/julia", "/opt/julia/share/julia", "/usr/local/share/julia"])
append!(empty!(Base.DL_LOAD_PATH), String[])
cd("/home/pkgeval/.julia/packages/ApproxBayes/RZWxX/test")
append!(empty!(ARGS), String[])
include("/home/pkgeval/.julia/packages/ApproxBayes/RZWxX/test/runtests.jl")
'`, ProcessExited(1))])
ERROR: Package ApproxBayes errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String,N} where N) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/Types.jl:54
[2] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/Operations.jl:1471
[3] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:313
[4] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:300
[5] #test#66 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:294 [inlined]
[6] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:294 [inlined]
[7] #test#65 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:293 [inlined]
[8] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:293 [inlined]
[9] test(::String; kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:292
[10] test(::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:292
[11] top-level scope at none:13