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1.5.0-DEV-07b72375e2.log
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Julia Version 1.5.0-DEV.633
Commit 07b72375e2 (2020-04-15 15:23 UTC)
Platform Info:
OS: Linux (x86_64-pc-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-9.0.1 (ORCJIT, skylake)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
Installed VersionParsing ─ v1.2.0
Installed ProgressMeter ── v1.2.0
Installed Requires ─────── v0.5.2
Installed Parsers ──────── v1.0.1
Installed Conda ────────── v1.4.1
Installed FEniCS ───────── v0.4.0
Installed MacroTools ───── v0.5.5
Installed JSON ─────────── v0.21.0
Installed PyCall ───────── v1.91.4
Updating `~/.julia/environments/v1.5/Project.toml`
[186dfeec] + FEniCS v0.4.0
Updating `~/.julia/environments/v1.5/Manifest.toml`
[8f4d0f93] + Conda v1.4.1
[186dfeec] + FEniCS v0.4.0
[682c06a0] + JSON v0.21.0
[1914dd2f] + MacroTools v0.5.5
[69de0a69] + Parsers v1.0.1
[92933f4c] + ProgressMeter v1.2.0
[438e738f] + PyCall v1.91.4
[ae029012] + Requires v0.5.2
[81def892] + VersionParsing v1.2.0
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8ba89e20] + Distributed
[b77e0a4c] + InteractiveUtils
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[de0858da] + Printf
[9a3f8284] + Random
[9e88b42a] + Serialization
[6462fe0b] + Sockets
[8dfed614] + Test
[4ec0a83e] + Unicode
Building Conda ─→ `~/.julia/packages/Conda/3rPhK/deps/build.log`
Building PyCall → `~/.julia/packages/PyCall/zqDXB/deps/build.log`
Building FEniCS → `~/.julia/packages/FEniCS/bNxUh/deps/build.log`
Testing FEniCS
Status `/tmp/jl_YMx15X/Project.toml`
[186dfeec] FEniCS v0.4.0
[1dea7af3] OrdinaryDiffEq v5.34.0
[92933f4c] ProgressMeter v1.2.0
[438e738f] PyCall v1.91.4
[ae029012] Requires v0.5.2
[8dfed614] Test
Status `/tmp/jl_YMx15X/Manifest.toml`
[1520ce14] AbstractTrees v0.3.3
[79e6a3ab] Adapt v1.0.1
[ec485272] ArnoldiMethod v0.0.4
[4fba245c] ArrayInterface v2.8.5
[d360d2e6] ChainRulesCore v0.7.1
[bbf7d656] CommonSubexpressions v0.2.0
[34da2185] Compat v3.8.0
[e66e0078] CompilerSupportLibraries_jll v0.3.3+0
[8f4d0f93] Conda v1.4.1
[88cd18e8] ConsoleProgressMonitor v0.1.2
[864edb3b] DataStructures v0.17.12
[2b5f629d] DiffEqBase v6.29.2
[163ba53b] DiffResults v1.0.2
[b552c78f] DiffRules v1.0.1
[b4f34e82] Distances v0.8.2
[ffbed154] DocStringExtensions v0.8.1
[d4d017d3] ExponentialUtilities v1.6.0
[186dfeec] FEniCS v0.4.0
[6a86dc24] FiniteDiff v2.3.0
[f6369f11] ForwardDiff v0.10.10
[069b7b12] FunctionWrappers v1.1.1
[01680d73] GenericSVD v0.3.0
[d25df0c9] Inflate v0.1.2
[42fd0dbc] IterativeSolvers v0.8.4
[82899510] IteratorInterfaceExtensions v1.0.0
[682c06a0] JSON v0.21.0
[2ee39098] LabelledArrays v1.1.0
[1d6d02ad] LeftChildRightSiblingTrees v0.1.2
[093fc24a] LightGraphs v1.3.1
[d3d80556] LineSearches v7.0.1
[e6f89c97] LoggingExtras v0.4.0
[1914dd2f] MacroTools v0.5.5
[46d2c3a1] MuladdMacro v0.2.2
[d41bc354] NLSolversBase v7.6.1
[2774e3e8] NLsolve v4.3.0
[77ba4419] NaNMath v0.3.3
[efe28fd5] OpenSpecFun_jll v0.5.3+3
[bac558e1] OrderedCollections v1.1.0
[1dea7af3] OrdinaryDiffEq v5.34.0
[d96e819e] Parameters v0.12.0
[69de0a69] Parsers v1.0.1
[33c8b6b6] ProgressLogging v0.1.2
[92933f4c] ProgressMeter v1.2.0
[438e738f] PyCall v1.91.4
[3cdcf5f2] RecipesBase v1.0.0
[731186ca] RecursiveArrayTools v2.3.1
[f2c3362d] RecursiveFactorization v0.1.0
[189a3867] Reexport v0.2.0
[ae029012] Requires v0.5.2
[f2b01f46] Roots v1.0.1
[699a6c99] SimpleTraits v0.9.1
[47a9eef4] SparseDiffTools v1.6.0
[276daf66] SpecialFunctions v0.10.0
[90137ffa] StaticArrays v0.12.1
[3783bdb8] TableTraits v1.0.0
[5d786b92] TerminalLoggers v0.1.1
[a2a6695c] TreeViews v0.3.0
[3a884ed6] UnPack v0.1.0
[81def892] VersionParsing v1.2.0
[19fa3120] VertexSafeGraphs v0.1.1
[700de1a5] ZygoteRules v0.2.0
[2a0f44e3] Base64
[ade2ca70] Dates
[8bb1440f] DelimitedFiles
[8ba89e20] Distributed
[b77e0a4c] InteractiveUtils
[76f85450] LibGit2
[8f399da3] Libdl
[37e2e46d] LinearAlgebra
[56ddb016] Logging
[d6f4376e] Markdown
[a63ad114] Mmap
[44cfe95a] Pkg
[de0858da] Printf
[3fa0cd96] REPL
[9a3f8284] Random
[ea8e919c] SHA
[9e88b42a] Serialization
[1a1011a3] SharedArrays
[6462fe0b] Sockets
[2f01184e] SparseArrays
[10745b16] Statistics
[4607b0f0] SuiteSparse
[8dfed614] Test
[cf7118a7] UUIDs
[4ec0a83e] Unicode
mshr has not been includedWARNING: Method definition lvsolve(Any, Any, Any) in module FEniCS at /home/pkgeval/.julia/packages/FEniCS/bNxUh/src/jsolve.jl:9 overwritten at /home/pkgeval/.julia/packages/FEniCS/bNxUh/src/jsolve.jl:11.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition lvsolve##kw(Any, typeof(FEniCS.lvsolve), Any, Any, Any) in module FEniCS at /home/pkgeval/.julia/packages/FEniCS/bNxUh/src/jsolve.jl:9 overwritten at /home/pkgeval/.julia/packages/FEniCS/bNxUh/src/jsolve.jl:11.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition nlvsolve(Any, Any) in module FEniCS at /home/pkgeval/.julia/packages/FEniCS/bNxUh/src/jsolve.jl:22 overwritten at /home/pkgeval/.julia/packages/FEniCS/bNxUh/src/jsolve.jl:23.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition nlvsolve##kw(Any, typeof(FEniCS.nlvsolve), Any, Any) in module FEniCS at /home/pkgeval/.julia/packages/FEniCS/bNxUh/src/jsolve.jl:22 overwritten at /home/pkgeval/.julia/packages/FEniCS/bNxUh/src/jsolve.jl:23.
** incremental compilation may be fatally broken for this module **
ERROR: LoadError: InitError: PyError (PyImport_ImportModule
The Python package fenics could not be found by pyimport. Usually this means
that you did not install fenics in the Python version being used by PyCall.
PyCall is currently configured to use the Python version at:
/usr/bin/python3
and you should use whatever mechanism you usually use (apt-get, pip, conda,
etcetera) to install the Python package containing the fenics module.
One alternative is to re-configure PyCall to use a different Python
version on your system: set ENV["PYTHON"] to the path/name of the python
executable you want to use, run Pkg.build("PyCall"), and re-launch Julia.
Another alternative is to configure PyCall to use a Julia-specific Python
distribution via the Conda.jl package (which installs a private Anaconda
Python distribution), which has the advantage that packages can be installed
and kept up-to-date via Julia. As explained in the PyCall documentation,
set ENV["PYTHON"]="", run Pkg.build("PyCall"), and re-launch Julia. Then,
To install the fenics module, you can use `pyimport_conda("fenics", PKG)`,
where PKG is the Anaconda package the contains the module fenics,
or alternatively you can use the Conda package directly (via
`using Conda` followed by `Conda.add` etcetera).
) <class 'ModuleNotFoundError'>
ModuleNotFoundError("No module named 'fenics'",)
Stacktrace:
[1] pyimport(::String) at /home/pkgeval/.julia/packages/PyCall/zqDXB/src/PyCall.jl:536
[2] pyimport_conda(::String, ::String, ::String) at /home/pkgeval/.julia/packages/PyCall/zqDXB/src/PyCall.jl:694
[3] __init__() at /home/pkgeval/.julia/packages/FEniCS/bNxUh/src/FEniCS.jl:27
[4] _include_from_serialized(::String, ::Array{Any,1}) at ./loading.jl:697
[5] _require_from_serialized(::String) at ./loading.jl:748
[6] _require(::Base.PkgId) at ./loading.jl:1039
[7] require(::Base.PkgId) at ./loading.jl:927
[8] require(::Module, ::Symbol) at ./loading.jl:922
[9] include(::String) at ./client.jl:442
[10] top-level scope at none:6
during initialization of module FEniCS
in expression starting at /home/pkgeval/.julia/packages/FEniCS/bNxUh/test/runtests.jl:1
ERROR: Package FEniCS errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String,N} where N) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/Types.jl:52
[2] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/Operations.jl:1516
[3] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:316
[4] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:303
[5] #test#68 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:297 [inlined]
[6] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:297 [inlined]
[7] #test#67 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:296 [inlined]
[8] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:296 [inlined]
[9] test(::String; kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:295
[10] test(::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:295
[11] top-level scope at none:16