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1.5.0-DEV-c9805191e3.log
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Julia Version 1.5.0-DEV.570
Commit c9805191e3 (2020-04-04 00:18 UTC)
Platform Info:
OS: Linux (x86_64-pc-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-9.0.1 (ORCJIT, skylake)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
Installed Rmath_jll ──────────────────── v0.2.2+0
Installed PooledArrays ───────────────── v0.5.3
Installed OpenSpecFun_jll ────────────── v0.5.3+3
Installed IteratorInterfaceExtensions ── v1.0.0
Installed Phylo ──────────────────────── v0.3.3
Installed Parsers ────────────────────── v1.0.1
Installed SpecialFunctions ───────────── v0.10.0
Installed JSON ───────────────────────── v0.21.0
Installed IterableTables ─────────────── v1.0.0
Installed PDMats ─────────────────────── v0.9.12
Installed SortingAlgorithms ──────────── v0.3.1
Installed CompilerSupportLibraries_jll ─ v0.3.3+0
Installed Reexport ───────────────────── v0.2.0
Installed QuadGK ─────────────────────── v2.3.1
Installed StatsFuns ──────────────────── v0.9.4
Installed FillArrays ─────────────────── v0.8.6
Installed DataStructures ─────────────── v0.17.11
Installed CategoricalArrays ──────────── v0.7.7
Installed DataAPI ────────────────────── v1.1.0
Installed RecipesBase ────────────────── v0.8.0
Installed InvertedIndices ────────────── v1.0.0
Installed Tokenize ───────────────────── v0.5.8
Installed OrderedCollections ─────────── v1.1.0
Installed TableTraitsUtils ───────────── v1.0.1
Installed StatsBase ──────────────────── v0.33.0
Installed DataValueInterfaces ────────── v1.0.0
Installed OpenBLAS_jll ───────────────── v0.3.9+1
Installed Arpack_jll ─────────────────── v3.5.0+3
Installed Requires ───────────────────── v0.5.2
Installed Rmath ──────────────────────── v0.6.1
Installed Tables ─────────────────────── v1.0.3
Installed Missings ───────────────────── v0.4.3
Installed Compat ─────────────────────── v2.2.0
Installed TableTraits ────────────────── v1.0.0
Installed Arpack ─────────────────────── v0.4.0
Installed DataValues ─────────────────── v0.4.13
Installed DataFrames ─────────────────── v0.20.2
Installed Distributions ──────────────── v0.23.2
Updating `~/.julia/environments/v1.5/Project.toml`
aea672f4 + Phylo v0.3.3
Updating `~/.julia/environments/v1.5/Manifest.toml`
7d9fca2a + Arpack v0.4.0
68821587 + Arpack_jll v3.5.0+3
324d7699 + CategoricalArrays v0.7.7
34da2185 + Compat v2.2.0
e66e0078 + CompilerSupportLibraries_jll v0.3.3+0
9a962f9c + DataAPI v1.1.0
a93c6f00 + DataFrames v0.20.2
864edb3b + DataStructures v0.17.11
e2d170a0 + DataValueInterfaces v1.0.0
e7dc6d0d + DataValues v0.4.13
31c24e10 + Distributions v0.23.2
1a297f60 + FillArrays v0.8.6
41ab1584 + InvertedIndices v1.0.0
1c8ee90f + IterableTables v1.0.0
82899510 + IteratorInterfaceExtensions v1.0.0
682c06a0 + JSON v0.21.0
e1d29d7a + Missings v0.4.3
4536629a + OpenBLAS_jll v0.3.9+1
efe28fd5 + OpenSpecFun_jll v0.5.3+3
bac558e1 + OrderedCollections v1.1.0
90014a1f + PDMats v0.9.12
69de0a69 + Parsers v1.0.1
aea672f4 + Phylo v0.3.3
2dfb63ee + PooledArrays v0.5.3
1fd47b50 + QuadGK v2.3.1
3cdcf5f2 + RecipesBase v0.8.0
189a3867 + Reexport v0.2.0
ae029012 + Requires v0.5.2
79098fc4 + Rmath v0.6.1
f50d1b31 + Rmath_jll v0.2.2+0
a2af1166 + SortingAlgorithms v0.3.1
276daf66 + SpecialFunctions v0.10.0
2913bbd2 + StatsBase v0.33.0
4c63d2b9 + StatsFuns v0.9.4
3783bdb8 + TableTraits v1.0.0
382cd787 + TableTraitsUtils v1.0.1
bd369af6 + Tables v1.0.3
0796e94c + Tokenize v0.5.8
2a0f44e3 + Base64
ade2ca70 + Dates
8bb1440f + DelimitedFiles
8ba89e20 + Distributed
9fa8497b + Future
b77e0a4c + InteractiveUtils
76f85450 + LibGit2
8f399da3 + Libdl
37e2e46d + LinearAlgebra
56ddb016 + Logging
d6f4376e + Markdown
a63ad114 + Mmap
44cfe95a + Pkg
de0858da + Printf
3fa0cd96 + REPL
9a3f8284 + Random
ea8e919c + SHA
9e88b42a + Serialization
1a1011a3 + SharedArrays
6462fe0b + Sockets
2f01184e + SparseArrays
10745b16 + Statistics
4607b0f0 + SuiteSparse
8dfed614 + Test
cf7118a7 + UUIDs
4ec0a83e + Unicode
┌ Warning: using test/REQUIRE files is deprecated and current support is lacking in some areas
└ @ Pkg.Operations /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/Operations.jl:1433
Testing Phylo
Status `/tmp/jl_OnIobR/Project.toml`
34da2185 Compat v2.2.0
a93c6f00 DataFrames v0.20.2
864edb3b DataStructures v0.17.11
31c24e10 Distributions v0.23.2
1c8ee90f IterableTables v1.0.0
e1d29d7a Missings v0.4.3
aea672f4 Phylo v0.3.3
6f49c342 RCall v0.13.4
3cdcf5f2 RecipesBase v0.8.0
ae029012 Requires v0.5.2
0796e94c Tokenize v0.5.8
Status `/tmp/jl_OnIobR/Manifest.toml`
7d9fca2a Arpack v0.4.0
68821587 Arpack_jll v3.5.0+3
324d7699 CategoricalArrays v0.7.7
34da2185 Compat v2.2.0
e66e0078 CompilerSupportLibraries_jll v0.3.3+0
8f4d0f93 Conda v1.4.1
9a962f9c DataAPI v1.1.0
a93c6f00 DataFrames v0.20.2
864edb3b DataStructures v0.17.11
e2d170a0 DataValueInterfaces v1.0.0
e7dc6d0d DataValues v0.4.13
31c24e10 Distributions v0.23.2
1a297f60 FillArrays v0.8.6
41ab1584 InvertedIndices v1.0.0
1c8ee90f IterableTables v1.0.0
82899510 IteratorInterfaceExtensions v1.0.0
682c06a0 JSON v0.21.0
e1d29d7a Missings v0.4.3
4536629a OpenBLAS_jll v0.3.9+1
efe28fd5 OpenSpecFun_jll v0.5.3+3
bac558e1 OrderedCollections v1.1.0
90014a1f PDMats v0.9.12
69de0a69 Parsers v1.0.1
aea672f4 Phylo v0.3.3
2dfb63ee PooledArrays v0.5.3
1fd47b50 QuadGK v2.3.1
6f49c342 RCall v0.13.4
3cdcf5f2 RecipesBase v0.8.0
189a3867 Reexport v0.2.0
ae029012 Requires v0.5.2
79098fc4 Rmath v0.6.1
f50d1b31 Rmath_jll v0.2.2+0
1277b4bf ShiftedArrays v1.0.0
a2af1166 SortingAlgorithms v0.3.1
276daf66 SpecialFunctions v0.10.0
2913bbd2 StatsBase v0.33.0
4c63d2b9 StatsFuns v0.9.4
3eaba693 StatsModels v0.6.6
3783bdb8 TableTraits v1.0.0
382cd787 TableTraitsUtils v1.0.1
bd369af6 Tables v1.0.3
0796e94c Tokenize v0.5.8
81def892 VersionParsing v1.2.0
1b915085 WinReg v0.3.1
2a0f44e3 Base64
ade2ca70 Dates
8bb1440f DelimitedFiles
8ba89e20 Distributed
9fa8497b Future
b77e0a4c InteractiveUtils
76f85450 LibGit2
8f399da3 Libdl
37e2e46d LinearAlgebra
56ddb016 Logging
d6f4376e Markdown
a63ad114 Mmap
44cfe95a Pkg
de0858da Printf
3fa0cd96 REPL
9a3f8284 Random
ea8e919c SHA
9e88b42a Serialization
1a1011a3 SharedArrays
6462fe0b Sockets
2f01184e SparseArrays
10745b16 Statistics
4607b0f0 SuiteSparse
8dfed614 Test
cf7118a7 UUIDs
4ec0a83e Unicode
[ Info: Running tests for files:
= Interface.jl
= Iterators.jl
= Tree.jl
= TreeSet.jl
= newick.jl
= rand.jl
= rcall.jl
= routes.jl
= show.jl
= trim.jl
┌ Warning: `@get!(dict, key, default)` at /home/pkgeval/.julia/packages/Requires/9Jse8/src/require.jl:11 is deprecated, use `get!(()->default, dict, key)` instead.
│ caller = include(::Function, ::Module, ::String) at Base.jl:380
└ @ Base ./Base.jl:380
Test Summary: | Pass Total
* Testing Interface.jl | 99 99
Test Summary: | Pass Total
* Testing Iterators.jl | 74 74
┌ Warning: LeafInfo names do not match actual leaves of tree
└ @ Phylo ~/.julia/packages/Phylo/g085o/src/Tree.jl:151
┌ Warning: LeafInfo names do not match actual leaves of tree
└ @ Phylo ~/.julia/packages/Phylo/g085o/src/Tree.jl:331
┌ Warning: LeafInfo names do not match actual leaves of tree
└ @ Phylo ~/.julia/packages/Phylo/g085o/src/Tree.jl:331
Test Summary: | Pass Total
* Testing Tree.jl | 49 49
Test Summary: | Pass Total
* Testing TreeSet.jl | 71 71
┌ Warning: `empty!(df::DataFrame)` is deprecated, use `select!(df, Int[])` instead.
│ caller = _resetleaves! at Tree.jl:114 [inlined]
└ @ Core ~/.julia/packages/Phylo/g085o/src/Tree.jl:114
[ Info: Created a tree called 'TREE1'
┌ Warning: `empty!(df::DataFrame)` is deprecated, use `select!(df, Int[])` instead.
│ caller = _resetleaves! at Tree.jl:114 [inlined]
└ @ Core ~/.julia/packages/Phylo/g085o/src/Tree.jl:114
[ Info: Created a tree called 'TREE2'
┌ Warning: `empty!(df::DataFrame)` is deprecated, use `select!(df, Int[])` instead.
│ caller = _resetleaves! at Tree.jl:294 [inlined]
└ @ Core ~/.julia/packages/Phylo/g085o/src/Tree.jl:294
Test Summary: | Pass Total
* Testing newick.jl | 22 22
Nonultrametric(): Test Failed at /home/pkgeval/.julia/packages/Phylo/g085o/test/test_rand.jl:11
Expression: eltype(nu) == NamedTree
Evaluated: Any == Phylo.BinaryTree{DataFrames.DataFrame,Dict{String,Any}}
Stacktrace:
[1] top-level scope at /home/pkgeval/.julia/packages/Phylo/g085o/test/test_rand.jl:11
[2] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1114
[3] top-level scope at /home/pkgeval/.julia/packages/Phylo/g085o/test/test_rand.jl:10
Ultrametric(): Test Failed at /home/pkgeval/.julia/packages/Phylo/g085o/test/test_rand.jl:49
Expression: eltype(ul) == BinaryTree{DataFrame, Vector{Float64}}
Evaluated: Any == Phylo.BinaryTree{DataFrames.DataFrame,Array{Float64,1}}
Stacktrace:
[1] top-level scope at /home/pkgeval/.julia/packages/Phylo/g085o/test/test_rand.jl:49
[2] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1114
[3] top-level scope at /home/pkgeval/.julia/packages/Phylo/g085o/test/test_rand.jl:34
Test Summary: | Pass Fail Total
* Testing rand.jl | 24 2 26
Nonultrametric() | 11 1 12
Ultrametric() | 7 1 8
TestSets | 6 6
Test Summary: | Pass Fail Total
* Testing rand.jl | 24 2 26
Nonultrametric() | 11 1 12
Ultrametric() | 7 1 8
TestSets | 6 6
ERROR: LoadError: Some tests did not pass: 24 passed, 2 failed, 0 errored, 0 broken.
in expression starting at /home/pkgeval/.julia/packages/Phylo/g085o/test/runtests.jl:21
caused by [exception 1]
Some tests did not pass: 24 passed, 2 failed, 0 errored, 0 broken.
ERROR: Package Phylo errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String,N} where N) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/Types.jl:53
[2] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/Operations.jl:1523
[3] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:316
[4] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:303
[5] #test#68 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:297 [inlined]
[6] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:297 [inlined]
[7] #test#67 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:296 [inlined]
[8] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:296 [inlined]
[9] test(::String; kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:295
[10] test(::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:295
[11] top-level scope at none:16