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1.5.0-DEV-c9805191e3.log
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Julia Version 1.5.0-DEV.570
Commit c9805191e3 (2020-04-04 00:18 UTC)
Platform Info:
OS: Linux (x86_64-pc-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-9.0.1 (ORCJIT, skylake)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
Installed VersionParsing ─ v1.2.0
Installed ProgressMeter ── v1.2.0
Installed Parsers ──────── v1.0.1
Installed Conda ────────── v1.4.1
Installed FEniCS ───────── v0.4.0
Installed MacroTools ───── v0.5.5
Installed PyCall ───────── v1.91.4
Installed JSON ─────────── v0.21.0
Installed Requires ─────── v0.5.2
Updating `~/.julia/environments/v1.5/Project.toml`
186dfeec + FEniCS v0.4.0
Updating `~/.julia/environments/v1.5/Manifest.toml`
8f4d0f93 + Conda v1.4.1
186dfeec + FEniCS v0.4.0
682c06a0 + JSON v0.21.0
1914dd2f + MacroTools v0.5.5
69de0a69 + Parsers v1.0.1
92933f4c + ProgressMeter v1.2.0
438e738f + PyCall v1.91.4
ae029012 + Requires v0.5.2
81def892 + VersionParsing v1.2.0
2a0f44e3 + Base64
ade2ca70 + Dates
8ba89e20 + Distributed
b77e0a4c + InteractiveUtils
8f399da3 + Libdl
37e2e46d + LinearAlgebra
56ddb016 + Logging
d6f4376e + Markdown
a63ad114 + Mmap
de0858da + Printf
9a3f8284 + Random
9e88b42a + Serialization
6462fe0b + Sockets
8dfed614 + Test
4ec0a83e + Unicode
Building Conda ─→ `~/.julia/packages/Conda/3rPhK/deps/build.log`
Building PyCall → `~/.julia/packages/PyCall/zqDXB/deps/build.log`
Building FEniCS → `~/.julia/packages/FEniCS/bNxUh/deps/build.log`
Testing FEniCS
Status `/tmp/jl_AEywUC/Project.toml`
186dfeec FEniCS v0.4.0
1dea7af3 OrdinaryDiffEq v5.32.2
92933f4c ProgressMeter v1.2.0
438e738f PyCall v1.91.4
ae029012 Requires v0.5.2
8dfed614 Test
Status `/tmp/jl_AEywUC/Manifest.toml`
1520ce14 AbstractTrees v0.3.2
79e6a3ab Adapt v1.0.1
ec485272 ArnoldiMethod v0.0.4
4fba245c ArrayInterface v2.6.2
d360d2e6 ChainRulesCore v0.7.1
bbf7d656 CommonSubexpressions v0.2.0
34da2185 Compat v3.8.0
e66e0078 CompilerSupportLibraries_jll v0.3.3+0
8f4d0f93 Conda v1.4.1
88cd18e8 ConsoleProgressMonitor v0.1.2
864edb3b DataStructures v0.17.11
2b5f629d DiffEqBase v6.25.2
163ba53b DiffResults v1.0.2
b552c78f DiffRules v1.0.1
b4f34e82 Distances v0.8.2
ffbed154 DocStringExtensions v0.8.1
d4d017d3 ExponentialUtilities v1.6.0
186dfeec FEniCS v0.4.0
6a86dc24 FiniteDiff v2.3.0
f6369f11 ForwardDiff v0.10.10
069b7b12 FunctionWrappers v1.1.1
01680d73 GenericSVD v0.3.0
d25df0c9 Inflate v0.1.2
42fd0dbc IterativeSolvers v0.8.3
82899510 IteratorInterfaceExtensions v1.0.0
682c06a0 JSON v0.21.0
1d6d02ad LeftChildRightSiblingTrees v0.1.2
093fc24a LightGraphs v1.3.1
d3d80556 LineSearches v7.0.1
e6f89c97 LoggingExtras v0.4.0
1914dd2f MacroTools v0.5.5
46d2c3a1 MuladdMacro v0.2.2
d41bc354 NLSolversBase v7.6.1
2774e3e8 NLsolve v4.3.0
77ba4419 NaNMath v0.3.3
efe28fd5 OpenSpecFun_jll v0.5.3+3
bac558e1 OrderedCollections v1.1.0
1dea7af3 OrdinaryDiffEq v5.32.2
d96e819e Parameters v0.12.0
69de0a69 Parsers v1.0.1
33c8b6b6 ProgressLogging v0.1.2
92933f4c ProgressMeter v1.2.0
438e738f PyCall v1.91.4
3cdcf5f2 RecipesBase v0.8.0
731186ca RecursiveArrayTools v2.1.2
f2c3362d RecursiveFactorization v0.1.0
189a3867 Reexport v0.2.0
ae029012 Requires v0.5.2
f2b01f46 Roots v1.0.1
699a6c99 SimpleTraits v0.9.1
47a9eef4 SparseDiffTools v1.4.0
276daf66 SpecialFunctions v0.10.0
90137ffa StaticArrays v0.12.1
3783bdb8 TableTraits v1.0.0
5d786b92 TerminalLoggers v0.1.1
a2a6695c TreeViews v0.3.0
3a884ed6 UnPack v0.1.0
81def892 VersionParsing v1.2.0
19fa3120 VertexSafeGraphs v0.1.1
700de1a5 ZygoteRules v0.2.0
2a0f44e3 Base64
ade2ca70 Dates
8bb1440f DelimitedFiles
8ba89e20 Distributed
b77e0a4c InteractiveUtils
76f85450 LibGit2
8f399da3 Libdl
37e2e46d LinearAlgebra
56ddb016 Logging
d6f4376e Markdown
a63ad114 Mmap
44cfe95a Pkg
de0858da Printf
3fa0cd96 REPL
9a3f8284 Random
ea8e919c SHA
9e88b42a Serialization
1a1011a3 SharedArrays
6462fe0b Sockets
2f01184e SparseArrays
10745b16 Statistics
4607b0f0 SuiteSparse
8dfed614 Test
cf7118a7 UUIDs
4ec0a83e Unicode
┌ Warning: `@get!(dict, key, default)` at /home/pkgeval/.julia/packages/Requires/9Jse8/src/require.jl:11 is deprecated, use `get!(()->default, dict, key)` instead.
│ caller = include(::Function, ::Module, ::String) at Base.jl:380
└ @ Base ./Base.jl:380
mshr has not been includedWARNING: Method definition lvsolve(Any, Any, Any) in module FEniCS at /home/pkgeval/.julia/packages/FEniCS/bNxUh/src/jsolve.jl:9 overwritten at /home/pkgeval/.julia/packages/FEniCS/bNxUh/src/jsolve.jl:11.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition lvsolve##kw(Any, typeof(FEniCS.lvsolve), Any, Any, Any) in module FEniCS at /home/pkgeval/.julia/packages/FEniCS/bNxUh/src/jsolve.jl:9 overwritten at /home/pkgeval/.julia/packages/FEniCS/bNxUh/src/jsolve.jl:11.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition nlvsolve(Any, Any) in module FEniCS at /home/pkgeval/.julia/packages/FEniCS/bNxUh/src/jsolve.jl:22 overwritten at /home/pkgeval/.julia/packages/FEniCS/bNxUh/src/jsolve.jl:23.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition nlvsolve##kw(Any, typeof(FEniCS.nlvsolve), Any, Any) in module FEniCS at /home/pkgeval/.julia/packages/FEniCS/bNxUh/src/jsolve.jl:22 overwritten at /home/pkgeval/.julia/packages/FEniCS/bNxUh/src/jsolve.jl:23.
** incremental compilation may be fatally broken for this module **
ERROR: LoadError: InitError: PyError (PyImport_ImportModule
The Python package fenics could not be found by pyimport. Usually this means
that you did not install fenics in the Python version being used by PyCall.
PyCall is currently configured to use the Python version at:
/usr/bin/python3
and you should use whatever mechanism you usually use (apt-get, pip, conda,
etcetera) to install the Python package containing the fenics module.
One alternative is to re-configure PyCall to use a different Python
version on your system: set ENV["PYTHON"] to the path/name of the python
executable you want to use, run Pkg.build("PyCall"), and re-launch Julia.
Another alternative is to configure PyCall to use a Julia-specific Python
distribution via the Conda.jl package (which installs a private Anaconda
Python distribution), which has the advantage that packages can be installed
and kept up-to-date via Julia. As explained in the PyCall documentation,
set ENV["PYTHON"]="", run Pkg.build("PyCall"), and re-launch Julia. Then,
To install the fenics module, you can use `pyimport_conda("fenics", PKG)`,
where PKG is the Anaconda package the contains the module fenics,
or alternatively you can use the Conda package directly (via
`using Conda` followed by `Conda.add` etcetera).
) <class 'ModuleNotFoundError'>
ModuleNotFoundError("No module named 'fenics'",)
Stacktrace:
[1] pyimport(::String) at /home/pkgeval/.julia/packages/PyCall/zqDXB/src/PyCall.jl:536
[2] pyimport_conda(::String, ::String, ::String) at /home/pkgeval/.julia/packages/PyCall/zqDXB/src/PyCall.jl:694
[3] __init__() at /home/pkgeval/.julia/packages/FEniCS/bNxUh/src/FEniCS.jl:27
[4] _include_from_serialized(::String, ::Array{Any,1}) at ./loading.jl:697
[5] _require_from_serialized(::String) at ./loading.jl:748
[6] _require(::Base.PkgId) at ./loading.jl:1039
[7] require(::Base.PkgId) at ./loading.jl:927
[8] require(::Module, ::Symbol) at ./loading.jl:922
[9] include(::String) at ./client.jl:441
[10] top-level scope at none:6
during initialization of module FEniCS
in expression starting at /home/pkgeval/.julia/packages/FEniCS/bNxUh/test/runtests.jl:1
ERROR: Package FEniCS errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String,N} where N) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/Types.jl:53
[2] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/Operations.jl:1523
[3] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:316
[4] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:303
[5] #test#68 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:297 [inlined]
[6] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:297 [inlined]
[7] #test#67 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:296 [inlined]
[8] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:296 [inlined]
[9] test(::String; kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:295
[10] test(::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:295
[11] top-level scope at none:16