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1.5.0-DEV-7206b56e94.log
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Julia Version 1.5.0-DEV.485
Commit 7206b56e94 (2020-03-18 17:25 UTC)
Platform Info:
OS: Linux (x86_64-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-9.0.1 (ORCJIT, skylake)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
Installed PDMats ─────────────────────── v0.9.12
Installed Rmath_jll ──────────────────── v0.2.2+0
Installed SortingAlgorithms ──────────── v0.3.1
Installed Arpack_jll ─────────────────── v3.5.0+2
Installed ApproxBayes ────────────────── v0.3.2
Installed QuadGK ─────────────────────── v2.3.1
Installed StatsBase ──────────────────── v0.32.2
Installed Distributions ──────────────── v0.23.0
Installed StatsFuns ──────────────────── v0.9.4
Installed OpenBLAS_jll ───────────────── v0.3.7+7
Installed Distances ──────────────────── v0.8.2
Installed ProgressMeter ──────────────── v1.2.0
Installed CompilerSupportLibraries_jll ─ v0.3.0+0
Installed Rmath ──────────────────────── v0.6.1
Installed RecipesBase ────────────────── v0.8.0
Installed DataStructures ─────────────── v0.17.10
Installed SpecialFunctions ───────────── v0.10.0
Installed DataAPI ────────────────────── v1.1.0
Installed Missings ───────────────────── v0.4.3
Installed FillArrays ─────────────────── v0.8.5
Installed OpenSpecFun_jll ────────────── v0.5.3+3
Installed OrderedCollections ─────────── v1.1.0
Installed Arpack ─────────────────────── v0.4.0
######### 13.7%######################################################################## 100.0%
####### 10.8%######################################################################## 100.0%
#=#=# ### 5.0%####################### 32.3%############################################# 63.6%######################################################################## 100.0%
#=#=# ## 3.2%## 3.3%######### 13.6%##################### 30.0%###################################### 53.8%########################################################### 82.6%######################################################################## 100.0%
#=#=# ######################################################################## 100.0%
Updating `~/.julia/environments/v1.5/Project.toml`
f5f396d3 + ApproxBayes v0.3.2
Updating `~/.julia/environments/v1.5/Manifest.toml`
f5f396d3 + ApproxBayes v0.3.2
7d9fca2a + Arpack v0.4.0
68821587 + Arpack_jll v3.5.0+2
e66e0078 + CompilerSupportLibraries_jll v0.3.0+0
9a962f9c + DataAPI v1.1.0
864edb3b + DataStructures v0.17.10
b4f34e82 + Distances v0.8.2
31c24e10 + Distributions v0.23.0
1a297f60 + FillArrays v0.8.5
e1d29d7a + Missings v0.4.3
4536629a + OpenBLAS_jll v0.3.7+7
efe28fd5 + OpenSpecFun_jll v0.5.3+3
bac558e1 + OrderedCollections v1.1.0
90014a1f + PDMats v0.9.12
92933f4c + ProgressMeter v1.2.0
1fd47b50 + QuadGK v2.3.1
3cdcf5f2 + RecipesBase v0.8.0
79098fc4 + Rmath v0.6.1
f50d1b31 + Rmath_jll v0.2.2+0
a2af1166 + SortingAlgorithms v0.3.1
276daf66 + SpecialFunctions v0.10.0
2913bbd2 + StatsBase v0.32.2
4c63d2b9 + StatsFuns v0.9.4
2a0f44e3 + Base64
ade2ca70 + Dates
8bb1440f + DelimitedFiles
8ba89e20 + Distributed
b77e0a4c + InteractiveUtils
76f85450 + LibGit2
8f399da3 + Libdl
37e2e46d + LinearAlgebra
56ddb016 + Logging
d6f4376e + Markdown
a63ad114 + Mmap
44cfe95a + Pkg
de0858da + Printf
3fa0cd96 + REPL
9a3f8284 + Random
ea8e919c + SHA
9e88b42a + Serialization
6462fe0b + Sockets
2f01184e + SparseArrays
10745b16 + Statistics
4607b0f0 + SuiteSparse
8dfed614 + Test
cf7118a7 + UUIDs
4ec0a83e + Unicode
Testing ApproxBayes
#=#=# ######################################################################## 100.0%
#=#=# ### 4.7%######### 13.6%################### 27.3%############################## 42.5%############################################## 64.5%################################################################# 91.1%######################################################################## 100.0%
#=#=# 0.8%######### 13.5%######################## 34.2%######################################### 57.9%################################################################## 92.6%######################################################################## 100.0%
#=#=# ######################################################################## 100.0%
#=#=# #################################################### 72.2%######################################################################## 100.0%
#=#=# ####################################################### 76.8%######################################################################## 100.0%
#=#=# ############# 18.2%################################### 49.2%############################################################### 88.6%######################################################################## 100.0%
#=#=# ############### 22.2%################################################### 71.0%######################################################################## 100.0%
#=#=# ############################ 39.8%######################################################################## 100.0%
#=#=# ######################################################################## 100.0%
#=#=# # 1.7%######### 12.9%#################### 28.4%################################## 48.4%################################################### 70.9%######################################################################## 100.0%
#=#=# ######################################################################## 100.0%
#=#=# ################## 25.2%#################################################### 73.2%######################################################################## 100.0%
#=#=# ####################### 32.8%######################################################################## 100.0%
#=#=# ############################################# 62.5%######################################################################## 100.0%
Status `/tmp/jl_nzS6eh/Project.toml`
f5f396d3 ApproxBayes v0.3.2
b4f34e82 Distances v0.8.2
31c24e10 Distributions v0.23.0
91a5bcdd Plots v0.29.7
92933f4c ProgressMeter v1.2.0
3cdcf5f2 RecipesBase v0.8.0
2913bbd2 StatsBase v0.32.2
8bb1440f DelimitedFiles
de0858da Printf
9a3f8284 Random
10745b16 Statistics
8dfed614 Test
Status `/tmp/jl_nzS6eh/Manifest.toml`
f5f396d3 ApproxBayes v0.3.2
7d9fca2a Arpack v0.4.0
68821587 Arpack_jll v3.5.0+2
6e34b625 Bzip2_jll v1.0.6+1
3da002f7 ColorTypes v0.10.0
5ae59095 Colors v0.12.0
e66e0078 CompilerSupportLibraries_jll v0.3.0+0
d38c429a Contour v0.5.2
9a962f9c DataAPI v1.1.0
864edb3b DataStructures v0.17.10
b4f34e82 Distances v0.8.2
31c24e10 Distributions v0.23.0
c87230d0 FFMPEG v0.3.0
b22a6f82 FFMPEG_jll v4.1.0+2
1a297f60 FillArrays v0.8.5
53c48c17 FixedPointNumbers v0.8.0
d7e528f0 FreeType2_jll v2.10.1+1
559328eb FriBidi_jll v1.0.5+2
28b8d3ca GR v0.47.0
4d00f742 GeometryTypes v0.7.6
c8e1da08 IterTools v1.3.0
682c06a0 JSON v0.21.0
c1c5ebd0 LAME_jll v3.100.0+0
dd192d2f LibVPX_jll v1.8.1+1
442fdcdd Measures v0.3.1
e1d29d7a Missings v0.4.3
77ba4419 NaNMath v0.3.3
e7412a2a Ogg_jll v1.3.3+0
4536629a OpenBLAS_jll v0.3.7+7
458c3c95 OpenSSL_jll v1.1.1+1
efe28fd5 OpenSpecFun_jll v0.5.3+3
91d4177d Opus_jll v1.3.1+0
bac558e1 OrderedCollections v1.1.0
90014a1f PDMats v0.9.12
69de0a69 Parsers v0.3.12
ccf2f8ad PlotThemes v1.0.1
995b91a9 PlotUtils v0.6.4
91a5bcdd Plots v0.29.7
92933f4c ProgressMeter v1.2.0
1fd47b50 QuadGK v2.3.1
3cdcf5f2 RecipesBase v0.8.0
189a3867 Reexport v0.2.0
ae029012 Requires v1.0.1
79098fc4 Rmath v0.6.1
f50d1b31 Rmath_jll v0.2.2+0
992d4aef Showoff v0.3.1
a2af1166 SortingAlgorithms v0.3.1
276daf66 SpecialFunctions v0.10.0
90137ffa StaticArrays v0.12.1
2913bbd2 StatsBase v0.32.2
4c63d2b9 StatsFuns v0.9.4
83775a58 Zlib_jll v1.2.11+8
0ac62f75 libass_jll v0.14.0+0
f638f0a6 libfdk_aac_jll v0.1.6+1
f27f6e37 libvorbis_jll v1.3.6+2
1270edf5 x264_jll v2019.5.25+1
dfaa095f x265_jll v3.0.0+0
2a0f44e3 Base64
ade2ca70 Dates
8bb1440f DelimitedFiles
8ba89e20 Distributed
b77e0a4c InteractiveUtils
76f85450 LibGit2
8f399da3 Libdl
37e2e46d LinearAlgebra
56ddb016 Logging
d6f4376e Markdown
a63ad114 Mmap
44cfe95a Pkg
de0858da Printf
3fa0cd96 REPL
9a3f8284 Random
ea8e919c SHA
9e88b42a Serialization
6462fe0b Sockets
2f01184e SparseArrays
10745b16 Statistics
4607b0f0 SuiteSparse
8dfed614 Test
cf7118a7 UUIDs
4ec0a83e Unicode
Running tests ...
* test_sampling.jl ...
1.158061 seconds (10.02 M allocations: 275.937 MiB, 5.75% gc time)
1.559859 seconds (10.01 M allocations: 294.780 MiB, 3.87% gc time)
* test_parameter.jl ...
Test parameters of normal distribution are inferred correctly (mean within 5% of true value)
Preparing to run in serial on 1 processor
Check ABC rejection algorithm correctly infers parameters
Check no errors arising from plotting
Check no errors arising from printing results
#########################################
Number of simulations: 1.07e+05
Acceptance ratio: 9.32e-04
Median (95% intervals):
Parameter 1: 1.99 (1.92,2.07)
Parameter 2: 0.42 (0.30,0.54)
#########################################
Check output is written to file
Preparing to run in serial on 1 processor
Preparing to run in serial on 1 processor
Check ABC SMC algorithm correctly infers parameters
Check no errors arising from plotting
Check no errors arising from printing results
#########################################
Total number of simulations: 3.48e+03
Cumulative number of simulations = [100, 453, 738, 1225, 1584, 2203, 2760, 3478]
Acceptance ratio: 2.88e-02
Tolerance schedule = [1.0, 0.65, 0.35, 0.26, 0.15, 0.09, 0.06, 0.05]
Median (95% intervals):
Parameter 1: 1.99 (1.95,2.04)
Parameter 2: 0.40 (0.35,0.46)
#########################################
Check output is written to file
Check ABC SMC algorithm correctly infers parameters with gaussian perturbation kernel
Check ABC SMC is more efficient than ABC rejection
Preparing to run in serial on 1 processor
Preparing to run in serial on 1 processor
Preparing to run in serial on 1 processor
┌ Warning: Only accepted 0 particles with ϵ < 0.1.
│ You may want to increase ϵ or increase maxiterations.
│ Resorting to taking the 100 particles with smallest distance
└ @ ApproxBayes ~/.julia/packages/ApproxBayes/RZWxX/src/ABCalgorithm.jl:85
Preparing to run in serial on 1 processor
Preparing to run in serial on 1 processor
Total number of simulations: 2.65e+03
Cumulative number of simulations = [100, 407, 637, 949, 1356, 1727, 2174, 2650]
Acceptance ratio: 3.77e-02
Tolerance schedule = [1.0, 0.72, 0.42, 0.24, 0.16, 0.09, 0.05, 0.05]
Median (95% intervals):
Parameter 1: 1.99 (1.95,2.03)
Parameter 2: 0.39 (0.35,0.46)
Check ABC SMC algorithm with gaussian perturbation kernel correctly infers parameters
* test_parameter_parallel.jl ...
Test parameters of normal distribution are inferred correctly (mean within 5% of true value)
Preparing to run in parallel on 2 processors
Check ABC rejection algorithm correctly infers parameters
Test Failed at /home/pkgeval/.julia/packages/ApproxBayes/RZWxX/test/test_parameter_parallel.jl:33
Expression: isapprox((mean(resrejection.parameters, dims = 1))[2], p2, rtol = 0.05)
Evaluated: isapprox(0.42373635945955895, 0.4; rtol = 0.05)
ERROR: LoadError: LoadError: There was an error during testing
in expression starting at /home/pkgeval/.julia/packages/ApproxBayes/RZWxX/test/test_parameter_parallel.jl:33
in expression starting at /home/pkgeval/.julia/packages/ApproxBayes/RZWxX/test/runtests.jl:13
ERROR: Package ApproxBayes errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String,N} where N) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/Types.jl:53
[2] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/Operations.jl:1523
[3] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:316
[4] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:303
[5] #test#68 at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:297 [inlined]
[6] test at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:297 [inlined]
[7] #test#67 at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:296 [inlined]
[8] test at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:296 [inlined]
[9] test(::String; kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:295
[10] test(::String) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:295
[11] top-level scope at none:13