-
Notifications
You must be signed in to change notification settings - Fork 5
/
1.6.0-DEV-22b5d93b2b.log
157 lines (156 loc) · 6.44 KB
/
1.6.0-DEV-22b5d93b2b.log
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
Julia Version 1.6.0-DEV.1069
Commit 22b5d93b2b (2020-09-28 17:33 UTC)
Platform Info:
OS: Linux (x86_64-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-10.0.1 (ORCJIT, skylake-avx512)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
Installed SortingAlgorithms ── v0.3.1
Installed Missings ─────────── v0.4.4
Installed DataAPI ──────────── v1.3.0
Installed OrderedCollections ─ v1.3.1
Installed DataStructures ───── v0.18.6
Installed Compat ───────────── v3.17.0
Installed StatsBase ────────── v0.33.1
Installed Watershed ────────── v0.7.0
Updating `~/.julia/environments/v1.6/Project.toml`
[adaf3d07] + Watershed v0.7.0
Updating `~/.julia/environments/v1.6/Manifest.toml`
[34da2185] + Compat v3.17.0
[9a962f9c] + DataAPI v1.3.0
[864edb3b] + DataStructures v0.18.6
[e1d29d7a] + Missings v0.4.4
[bac558e1] + OrderedCollections v1.3.1
[a2af1166] + SortingAlgorithms v0.3.1
[2913bbd2] + StatsBase v0.33.1
[adaf3d07] + Watershed v0.7.0
[56f22d72] + Artifacts
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[fa267f1f] + TOML
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Testing Watershed
Status `/tmp/jl_E1B6sf/Project.toml`
[864edb3b] DataStructures v0.18.6
[2913bbd2] StatsBase v0.33.1
[adaf3d07] Watershed v0.7.0
[8dfed614] Test
Status `/tmp/jl_E1B6sf/Manifest.toml`
[34da2185] Compat v3.17.0
[9a962f9c] DataAPI v1.3.0
[864edb3b] DataStructures v0.18.6
[e1d29d7a] Missings v0.4.4
[bac558e1] OrderedCollections v1.3.1
[a2af1166] SortingAlgorithms v0.3.1
[2913bbd2] StatsBase v0.33.1
[adaf3d07] Watershed v0.7.0
[56f22d72] Artifacts
[2a0f44e3] Base64
[ade2ca70] Dates
[8bb1440f] DelimitedFiles
[8ba89e20] Distributed
[b77e0a4c] InteractiveUtils
[76f85450] LibGit2
[8f399da3] Libdl
[37e2e46d] LinearAlgebra
[56ddb016] Logging
[d6f4376e] Markdown
[a63ad114] Mmap
[44cfe95a] Pkg
[de0858da] Printf
[3fa0cd96] REPL
[9a3f8284] Random
[ea8e919c] SHA
[9e88b42a] Serialization
[1a1011a3] SharedArrays
[6462fe0b] Sockets
[2f01184e] SparseArrays
[10745b16] Statistics
[fa267f1f] TOML
[8dfed614] Test
[cf7118a7] UUIDs
[4ec0a83e] Unicode
Testing Running tests...
[ Info: use percentage threshold: low 0.1, high 0.8, thresholds Tuple{Int64, Float32}[(800, 0.2)]
[ Info: absolute watershed threshold: low: 0.100218, high: 0.799681, thresholds: Tuple{Int64, Float32}[(800, 0.199926)], dust: 600
steepestascent...
divideplateaus...
findbasins!
found: 32600 components
regiongraph...
Region graph size: 171725
use region graph construction code > julia 0.4
mergeregions...
┌ Warning: `find_root` is deprecated, use `find_root!` instead.
│ caller = mergeregions!(seg::Array{UInt32, 3}, rg::Vector{Tuple{Float32, UInt32, UInt32}}, counts::Vector{Int64}, thresholds::Vector{Tuple{Int64, Float32}}, dust_size::Int64) at mergeregions.jl:27
└ @ Watershed ~/.julia/packages/Watershed/0bl9y/src/mergeregions.jl:27
ERROR: LoadError: MethodError: no method matching find_root!(::DataStructures.IntDisjointSets{Int64}, ::UInt32)
Closest candidates are:
find_root!(::DataStructures.IntDisjointSets{T}, !Matched::T) where T<:Integer at /home/pkgeval/.julia/packages/DataStructures/mgePl/src/disjoint_set.jl:72
find_root!(!Matched::DataStructures.DisjointSets{T}, ::T) where T at /home/pkgeval/.julia/packages/DataStructures/mgePl/src/disjoint_set.jl:198
Stacktrace:
[1] find_root(::DataStructures.IntDisjointSets{Int64}, ::Vararg{Any, N} where N)
@ DataStructures ./deprecated.jl:48
[2] mergeregions!(seg::Array{UInt32, 3}, rg::Vector{Tuple{Float32, UInt32, UInt32}}, counts::Vector{Int64}, thresholds::Vector{Tuple{Int64, Float32}}, dust_size::Int64)
@ Watershed ~/.julia/packages/Watershed/0bl9y/src/mergeregions.jl:27
[3] _baseseg(aff::Array{Float32, 4}; low::Float32, high::Float32, thresholds::Vector{Tuple{Int64, Float32}}, dust_size::Int64, is_threshold_relative::Bool)
@ Watershed ~/.julia/packages/Watershed/0bl9y/src/segment.jl:54
[4] #watershed#9
@ ~/.julia/packages/Watershed/0bl9y/src/segment.jl:76 [inlined]
[5] top-level scope
@ ~/.julia/packages/Watershed/0bl9y/test/runtests.jl:17
[6] include(fname::String)
@ Base.MainInclude ./client.jl:444
[7] top-level scope
@ none:6
in expression starting at /home/pkgeval/.julia/packages/Watershed/0bl9y/test/runtests.jl:17
ERROR: Package Watershed errored during testing
Stacktrace:
[1] pkgerror(msg::String)
@ Pkg.Types /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/Types.jl:52
[2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing)
@ Pkg.Operations /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/Operations.jl:1609
[3] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, kwargs::Base.Iterators.Pairs{Union{}, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ Pkg.API /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:331
[4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec})
@ Pkg.API /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:318
[5] #test#62
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:68 [inlined]
[6] test
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:68 [inlined]
[7] #test#61
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:66 [inlined]
[8] test
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:66 [inlined]
[9] test(pkg::String; kwargs::Base.Iterators.Pairs{Union{}, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ Pkg.API /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:65
[10] test(pkg::String)
@ Pkg.API /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:65
[11] top-level scope
@ none:19