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1.6.0-DEV-22b5d93b2b.log
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1.6.0-DEV-22b5d93b2b.log
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Julia Version 1.6.0-DEV.1069
Commit 22b5d93b2b (2020-09-28 17:33 UTC)
Platform Info:
OS: Linux (x86_64-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-10.0.1 (ORCJIT, skylake-avx512)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
Installed JSON ─────────── v0.21.1
Installed Requires ─────── v1.0.3
Installed BSON ─────────── v0.2.6
Installed Parsers ──────── v1.0.10
Installed MacroTools ───── v0.5.5
Installed Conda ────────── v1.4.1
Installed VersionParsing ─ v1.2.0
Installed PyCall ───────── v1.92.0
Installed PyCallUtils ──── v0.2.2
Updating `~/.julia/environments/v1.6/Project.toml`
[02651160] + PyCallUtils v0.2.2
Updating `~/.julia/environments/v1.6/Manifest.toml`
[fbb218c0] + BSON v0.2.6
[8f4d0f93] + Conda v1.4.1
[682c06a0] + JSON v0.21.1
[1914dd2f] + MacroTools v0.5.5
[69de0a69] + Parsers v1.0.10
[438e738f] + PyCall v1.92.0
[02651160] + PyCallUtils v0.2.2
[ae029012] + Requires v1.0.3
[81def892] + VersionParsing v1.2.0
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8ba89e20] + Distributed
[b77e0a4c] + InteractiveUtils
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[de0858da] + Printf
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building Conda ─→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/7a58bb32ce5d85f8bf7559aa7c2842f9aecf52fc/build.log`
Building PyCall → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/b4e471a2b1739dba687d22d3293aa16bc5f3925b/build.log`
Testing PyCallUtils
Status `/tmp/jl_owh9gh/Project.toml`
[fbb218c0] BSON v0.2.6
[438e738f] PyCall v1.92.0
[02651160] PyCallUtils v0.2.2
[ae029012] Requires v1.0.3
[9a3f8284] Random
[9e88b42a] Serialization
[2f01184e] SparseArrays
[8dfed614] Test
Status `/tmp/jl_owh9gh/Manifest.toml`
[fbb218c0] BSON v0.2.6
[8f4d0f93] Conda v1.4.1
[682c06a0] JSON v0.21.1
[1914dd2f] MacroTools v0.5.5
[69de0a69] Parsers v1.0.10
[438e738f] PyCall v1.92.0
[02651160] PyCallUtils v0.2.2
[ae029012] Requires v1.0.3
[81def892] VersionParsing v1.2.0
[2a0f44e3] Base64
[ade2ca70] Dates
[8ba89e20] Distributed
[b77e0a4c] InteractiveUtils
[8f399da3] Libdl
[37e2e46d] LinearAlgebra
[56ddb016] Logging
[d6f4376e] Markdown
[a63ad114] Mmap
[de0858da] Printf
[9a3f8284] Random
[ea8e919c] SHA
[9e88b42a] Serialization
[6462fe0b] Sockets
[2f01184e] SparseArrays
[8dfed614] Test
[cf7118a7] UUIDs
[4ec0a83e] Unicode
Testing Running tests...
WARNING: Method definition getindex(PyCall.PyObject, Union{AbstractString, Symbol}) in module PyCall at /home/pkgeval/.julia/packages/PyCall/l64G5/src/PyCall.jl:337 overwritten in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/DufyN/src/PyCallUtils.jl:45.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition setindex!(PyCall.PyObject, Any, Union{AbstractString, Symbol}) in module PyCall at /home/pkgeval/.julia/packages/PyCall/l64G5/src/PyCall.jl:346 overwritten in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/DufyN/src/PyCallUtils.jl:46.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition getindex(PyCall.PyObject, Integer) in module PyCall at deprecated.jl:70 overwritten in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/DufyN/src/PyCallUtils.jl:48.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition getindex(PyCall.PyObject, Integer, Integer) in module PyCall at deprecated.jl:70 overwritten in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/DufyN/src/PyCallUtils.jl:49.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition getindex(PyCall.PyObject, Integer...) in module PyCall at deprecated.jl:70 overwritten in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/DufyN/src/PyCallUtils.jl:50.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition setindex!(PyCall.PyObject, Any, Integer) in module PyCall at deprecated.jl:70 overwritten in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/DufyN/src/PyCallUtils.jl:51.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition setindex!(PyCall.PyObject, Any, Integer, Integer) in module PyCall at deprecated.jl:70 overwritten in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/DufyN/src/PyCallUtils.jl:52.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition setindex!(PyCall.PyObject, Any, Integer...) in module PyCall at deprecated.jl:70 overwritten in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/DufyN/src/PyCallUtils.jl:53.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition jlwrap_iterator(Any) in module PyCall at /home/pkgeval/.julia/packages/PyCall/l64G5/src/pyiterator.jl:137 overwritten in module PyCallUtils at /home/pkgeval/.julia/packages/PyCallUtils/DufyN/src/PyCallUtils.jl:55.
** incremental compilation may be fatally broken for this module **
Error During Test at /home/pkgeval/.julia/packages/PyCallUtils/DufyN/test/runtests.jl:14
Test threw exception
Expression: convert(SparseMatrixCSC, PyObject(x)) == x
PyError (PyImport_ImportModule
The Python package scipy.sparse could not be imported by pyimport. Usually this means
that you did not install scipy.sparse in the Python version being used by PyCall.
PyCall is currently configured to use the Julia-specific Python distribution
installed by the Conda.jl package. To install the scipy.sparse module, you can
use `pyimport_conda("scipy.sparse", PKG)`, where PKG is the Anaconda
package the contains the module scipy.sparse, or alternatively you can use the
Conda package directly (via `using Conda` followed by `Conda.add` etcetera).
Alternatively, if you want to use a different Python distribution on your
system, such as a system-wide Python (as opposed to the Julia-specific Python),
you can re-configure PyCall with that Python. As explained in the PyCall
documentation, set ENV["PYTHON"] to the path/name of the python executable
you want to use, run Pkg.build("PyCall"), and re-launch Julia.
) <class 'ModuleNotFoundError'>
ModuleNotFoundError("No module named 'scipy'")
Stacktrace:
[1] pyimport(name::String)
@ PyCall ~/.julia/packages/PyCall/l64G5/src/PyCall.jl:547
[2] PyObject(S::SparseMatrixCSC{Float64, Int64})
@ PyCallUtils ~/.julia/packages/PyCallUtils/DufyN/src/PyCallUtils.jl:67
[3] top-level scope
@ ~/.julia/packages/PyCallUtils/DufyN/test/runtests.jl:14
[4] include(fname::String)
@ Base.MainInclude ./client.jl:444
[5] top-level scope
@ none:6
[6] eval(m::Module, e::Any)
@ Core ./boot.jl:360
[7] exec_options(opts::Base.JLOptions)
@ Base ./client.jl:261
[8] _start()
@ Base ./client.jl:485
ERROR: LoadError: There was an error during testing
in expression starting at /home/pkgeval/.julia/packages/PyCallUtils/DufyN/test/runtests.jl:14
ERROR: Package PyCallUtils errored during testing
Stacktrace:
[1] pkgerror(msg::String)
@ Pkg.Types /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/Types.jl:52
[2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing)
@ Pkg.Operations /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/Operations.jl:1609
[3] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, kwargs::Base.Iterators.Pairs{Union{}, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ Pkg.API /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:331
[4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec})
@ Pkg.API /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:318
[5] #test#62
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:68 [inlined]
[6] test
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:68 [inlined]
[7] #test#61
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:66 [inlined]
[8] test
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:66 [inlined]
[9] test(pkg::String; kwargs::Base.Iterators.Pairs{Union{}, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ Pkg.API /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:65
[10] test(pkg::String)
@ Pkg.API /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:65
[11] top-level scope
@ none:19