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1.6.0-DEV-22b5d93b2b.log
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1.6.0-DEV-22b5d93b2b.log
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Julia Version 1.6.0-DEV.1069
Commit 22b5d93b2b (2020-09-28 17:33 UTC)
Platform Info:
OS: Linux (x86_64-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-10.0.1 (ORCJIT, skylake-avx512)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
Installed EcoBase ───────────────────── v0.1.3
Installed InvertedIndices ───────────── v1.0.0
Installed Compat ────────────────────── v3.17.0
Installed Diversity ─────────────────── v0.5.1
Installed RecipesBase ───────────────── v1.1.0
Installed Missings ──────────────────── v0.4.4
Installed Requires ──────────────────── v1.0.3
Installed DataStructures ────────────── v0.18.6
Installed DataValueInterfaces ───────── v1.0.0
Installed SortingAlgorithms ─────────── v0.3.1
Installed EllipsisNotation ──────────── v0.4.0
Installed TableTraits ───────────────── v1.0.0
Installed Tables ────────────────────── v1.0.5
Installed PooledArrays ──────────────── v0.5.3
Installed AxisArrays ────────────────── v0.4.3
Installed IntervalSets ──────────────── v0.5.1
Installed Parsers ───────────────────── v1.0.10
Installed DataAPI ───────────────────── v1.3.0
Installed RangeArrays ───────────────── v0.3.2
Installed OrderedCollections ────────── v1.3.1
Installed JSON ──────────────────────── v0.21.1
Installed Reexport ──────────────────── v0.2.0
Installed CategoricalArrays ─────────── v0.7.7
Installed IterTools ─────────────────── v1.3.0
Installed IteratorInterfaceExtensions ─ v1.0.0
Installed DataFrames ────────────────── v0.20.2
Updating `~/.julia/environments/v1.6/Project.toml`
[d3d5718d] + Diversity v0.5.1
Updating `~/.julia/environments/v1.6/Manifest.toml`
[39de3d68] + AxisArrays v0.4.3
[324d7699] + CategoricalArrays v0.7.7
[34da2185] + Compat v3.17.0
[9a962f9c] + DataAPI v1.3.0
[a93c6f00] + DataFrames v0.20.2
[864edb3b] + DataStructures v0.18.6
[e2d170a0] + DataValueInterfaces v1.0.0
[d3d5718d] + Diversity v0.5.1
[a58aae7d] + EcoBase v0.1.3
[da5c29d0] + EllipsisNotation v0.4.0
[8197267c] + IntervalSets v0.5.1
[41ab1584] + InvertedIndices v1.0.0
[c8e1da08] + IterTools v1.3.0
[82899510] + IteratorInterfaceExtensions v1.0.0
[682c06a0] + JSON v0.21.1
[e1d29d7a] + Missings v0.4.4
[bac558e1] + OrderedCollections v1.3.1
[69de0a69] + Parsers v1.0.10
[2dfb63ee] + PooledArrays v0.5.3
[b3c3ace0] + RangeArrays v0.3.2
[3cdcf5f2] + RecipesBase v1.1.0
[189a3867] + Reexport v0.2.0
[ae029012] + Requires v1.0.3
[a2af1166] + SortingAlgorithms v0.3.1
[3783bdb8] + TableTraits v1.0.0
[bd369af6] + Tables v1.0.5
[56f22d72] + Artifacts
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[9fa8497b] + Future
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[fa267f1f] + TOML
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Testing Diversity
┌ Error: Pkg.Resolve.ResolverError("Unsatisfiable requirements detected for package Phylo [aea672f4]:\n Phylo [aea672f4] log:\n ├─possible versions are: 0.3.1-0.4.3 or uninstalled\n ├─restricted to versions 0.4.1-0.4 by an explicit requirement, leaving only versions 0.4.1-0.4.3\n └─restricted by compatibility requirements with DataStructures [864edb3b] to versions: uninstalled — no versions left\n └─DataStructures [864edb3b] log:\n ├─possible versions are: 0.9.0-0.18.6 or uninstalled\n └─restricted to versions 0.18.6 by an explicit requirement, leaving only versions 0.18.6", nothing)
└ @ Pkg.Operations /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/Operations.jl:1457
ERROR: Error building `RCall`:
PREFIX=/home/pkgeval/.julia/conda/3
Unpacking payload ...
0%| | 0/35 [00:00<?, ?it/s]Extracting : requests-2.23.0-py38_0.conda: 0%| | 0/35 [00:00<?, ?it/s]Extracting : requests-2.23.0-py38_0.conda: 3%|2 | 1/35 [00:00<00:07, 4.68it/s]Extracting : urllib3-1.25.8-py38_0.conda: 3%|2 | 1/35 [00:00<00:07, 4.68it/s] Extracting : pyopenssl-19.1.0-py38_0.conda: 6%|5 | 2/35 [00:00<00:07, 4.68it/s]Extracting : pip-20.0.2-py38_3.conda: 9%|8 | 3/35 [00:00<00:06, 4.68it/s] Extracting : pip-20.0.2-py38_3.conda: 11%|#1 | 4/35 [00:00<00:05, 5.27it/s]Extracting : wheel-0.34.2-py38_0.conda: 11%|#1 | 4/35 [00:00<00:05, 5.27it/s]Extracting : cryptography-2.9.2-py38h1ba5d50_0.conda: 14%|#4 | 5/35 [00:00<00:05, 5.27it/s]Extracting : cryptography-2.9.2-py38h1ba5d50_0.conda: 17%|#7 | 6/35 [00:00<00:04, 6.51it/s]Extracting : setuptools-46.4.0-py38_0.conda: 17%|#7 | 6/35 [00:00<00:04, 6.51it/s] Extracting : conda-package-handling-1.6.1-py38h7b6447c_0.conda: 20%|## | 7/35 [00:00<00:04, 6.51it/s]Extracting : cffi-1.14.0-py38he30daa8_1.conda: 23%|##2 | 8/35 [00:00<00:04, 6.51it/s] Extracting : tqdm-4.46.0-py_0.conda: 26%|##5 | 9/35 [00:00<00:03, 6.51it/s] Extracting : six-1.14.0-py38_0.conda: 29%|##8 | 10/35 [00:00<00:03, 6.51it/s]Extracting : ruamel_yaml-0.15.87-py38h7b6447c_0.conda: 31%|###1 | 11/35 [00:00<00:03, 6.51it/s]Extracting : pysocks-1.7.1-py38_0.conda: 34%|###4 | 12/35 [00:00<00:03, 6.51it/s] Extracting : pycparser-2.20-py_0.conda: 37%|###7 | 13/35 [00:00<00:03, 6.51it/s] Extracting : pycosat-0.6.3-py38h7b6447c_1.conda: 40%|#### | 14/35 [00:00<00:03, 6.51it/s]Extracting : idna-2.9-py_1.conda: 43%|####2 | 15/35 [00:00<00:03, 6.51it/s] Extracting : chardet-3.0.4-py38_1003.conda: 46%|####5 | 16/35 [00:00<00:02, 6.51it/s]Extracting : certifi-2020.4.5.1-py38_0.conda: 49%|####8 | 17/35 [00:00<00:02, 6.51it/s]Extracting : sqlite-3.31.1-h62c20be_1.conda: 51%|#####1 | 18/35 [00:00<00:02, 6.51it/s] Extracting : tk-8.6.8-hbc83047_0.conda: 54%|#####4 | 19/35 [00:00<00:02, 6.51it/s] Extracting : readline-8.0-h7b6447c_0.conda: 57%|#####7 | 20/35 [00:00<00:02, 6.51it/s]Extracting : libedit-3.1.20181209-hc058e9b_0.conda: 60%|###### | 21/35 [00:00<00:02, 6.51it/s]Extracting : zlib-1.2.11-h7b6447c_3.conda: 63%|######2 | 22/35 [00:00<00:01, 6.51it/s] Extracting : yaml-0.1.7-had09818_2.conda: 66%|######5 | 23/35 [00:00<00:01, 6.51it/s] Extracting : xz-5.2.5-h7b6447c_0.conda: 69%|######8 | 24/35 [00:00<00:01, 6.51it/s] Extracting : openssl-1.1.1g-h7b6447c_0.conda: 71%|#######1 | 25/35 [00:00<00:01, 6.51it/s]Extracting : ncurses-6.2-he6710b0_1.conda: 74%|#######4 | 26/35 [00:00<00:01, 6.51it/s] Extracting : ncurses-6.2-he6710b0_1.conda: 77%|#######7 | 27/35 [00:00<00:00, 9.02it/s]Extracting : libffi-3.3-he6710b0_1.conda: 77%|#######7 | 27/35 [00:00<00:00, 9.02it/s] Extracting : libgcc-ng-9.1.0-hdf63c60_0.conda: 80%|######## | 28/35 [00:01<00:00, 9.02it/s]Extracting : libstdcxx-ng-9.1.0-hdf63c60_0.conda: 83%|########2 | 29/35 [00:01<00:00, 9.02it/s]Extracting : ld_impl_linux-64-2.33.1-h53a641e_7.conda: 86%|########5 | 30/35 [00:01<00:00, 9.02it/s]Extracting : ld_impl_linux-64-2.33.1-h53a641e_7.conda: 89%|########8 | 31/35 [00:01<00:00, 10.43it/s]Extracting : ca-certificates-2020.1.1-0.conda: 89%|########8 | 31/35 [00:01<00:00, 10.43it/s] Extracting : _libgcc_mutex-0.1-main.conda: 91%|#########1| 32/35 [00:01<00:00, 10.43it/s] Extracting : python-3.8.3-hcff3b4d_0.conda: 94%|#########4| 33/35 [00:02<00:00, 10.43it/s]Extracting : python-3.8.3-hcff3b4d_0.conda: 97%|#########7| 34/35 [00:02<00:00, 6.86it/s]Extracting : conda-4.8.3-py38_0.tar.bz2: 97%|#########7| 34/35 [00:02<00:00, 6.86it/s] Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /home/pkgeval/.julia/conda/3
added / updated specs:
- _libgcc_mutex==0.1=main
- ca-certificates==2020.1.1=0
- certifi==2020.4.5.1=py38_0
- cffi==1.14.0=py38he30daa8_1
- chardet==3.0.4=py38_1003
- conda-package-handling==1.6.1=py38h7b6447c_0
- conda==4.8.3=py38_0
- cryptography==2.9.2=py38h1ba5d50_0
- idna==2.9=py_1
- ld_impl_linux-64==2.33.1=h53a641e_7
- libedit==3.1.20181209=hc058e9b_0
- libffi==3.3=he6710b0_1
- libgcc-ng==9.1.0=hdf63c60_0
- libstdcxx-ng==9.1.0=hdf63c60_0
- ncurses==6.2=he6710b0_1
- openssl==1.1.1g=h7b6447c_0
- pip==20.0.2=py38_3
- pycosat==0.6.3=py38h7b6447c_1
- pycparser==2.20=py_0
- pyopenssl==19.1.0=py38_0
- pysocks==1.7.1=py38_0
- python==3.8.3=hcff3b4d_0
- readline==8.0=h7b6447c_0
- requests==2.23.0=py38_0
- ruamel_yaml==0.15.87=py38h7b6447c_0
- setuptools==46.4.0=py38_0
- six==1.14.0=py38_0
- sqlite==3.31.1=h62c20be_1
- tk==8.6.8=hbc83047_0
- tqdm==4.46.0=py_0
- urllib3==1.25.8=py38_0
- wheel==0.34.2=py38_0
- xz==5.2.5=h7b6447c_0
- yaml==0.1.7=had09818_2
- zlib==1.2.11=h7b6447c_3
The following NEW packages will be INSTALLED:
_libgcc_mutex pkgs/main/linux-64::_libgcc_mutex-0.1-main
ca-certificates pkgs/main/linux-64::ca-certificates-2020.1.1-0
certifi pkgs/main/linux-64::certifi-2020.4.5.1-py38_0
cffi pkgs/main/linux-64::cffi-1.14.0-py38he30daa8_1
chardet pkgs/main/linux-64::chardet-3.0.4-py38_1003
conda pkgs/main/linux-64::conda-4.8.3-py38_0
conda-package-han~ pkgs/main/linux-64::conda-package-handling-1.6.1-py38h7b6447c_0
cryptography pkgs/main/linux-64::cryptography-2.9.2-py38h1ba5d50_0
idna pkgs/main/noarch::idna-2.9-py_1
ld_impl_linux-64 pkgs/main/linux-64::ld_impl_linux-64-2.33.1-h53a641e_7
libedit pkgs/main/linux-64::libedit-3.1.20181209-hc058e9b_0
libffi pkgs/main/linux-64::libffi-3.3-he6710b0_1
libgcc-ng pkgs/main/linux-64::libgcc-ng-9.1.0-hdf63c60_0
libstdcxx-ng pkgs/main/linux-64::libstdcxx-ng-9.1.0-hdf63c60_0
ncurses pkgs/main/linux-64::ncurses-6.2-he6710b0_1
openssl pkgs/main/linux-64::openssl-1.1.1g-h7b6447c_0
pip pkgs/main/linux-64::pip-20.0.2-py38_3
pycosat pkgs/main/linux-64::pycosat-0.6.3-py38h7b6447c_1
pycparser pkgs/main/noarch::pycparser-2.20-py_0
pyopenssl pkgs/main/linux-64::pyopenssl-19.1.0-py38_0
pysocks pkgs/main/linux-64::pysocks-1.7.1-py38_0
python pkgs/main/linux-64::python-3.8.3-hcff3b4d_0
readline pkgs/main/linux-64::readline-8.0-h7b6447c_0
requests pkgs/main/linux-64::requests-2.23.0-py38_0
ruamel_yaml pkgs/main/linux-64::ruamel_yaml-0.15.87-py38h7b6447c_0
setuptools pkgs/main/linux-64::setuptools-46.4.0-py38_0
six pkgs/main/linux-64::six-1.14.0-py38_0
sqlite pkgs/main/linux-64::sqlite-3.31.1-h62c20be_1
tk pkgs/main/linux-64::tk-8.6.8-hbc83047_0
tqdm pkgs/main/noarch::tqdm-4.46.0-py_0
urllib3 pkgs/main/linux-64::urllib3-1.25.8-py38_0
wheel pkgs/main/linux-64::wheel-0.34.2-py38_0
xz pkgs/main/linux-64::xz-5.2.5-h7b6447c_0
yaml pkgs/main/linux-64::yaml-0.1.7-had09818_2
zlib pkgs/main/linux-64::zlib-1.2.11-h7b6447c_3
Preparing transaction: ...working... done
Executing transaction: ...working... done
installation finished.
Warning: 'defaults' already in 'channels' list, moving to the top
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /home/pkgeval/.julia/conda/3
added / updated specs:
- conda
The following packages will be downloaded:
package | build
---------------------------|-----------------
brotlipy-0.7.0 |py38h7b6447c_1000 322 KB
ca-certificates-2020.7.22 | 0 125 KB
certifi-2020.6.20 | py38_0 156 KB
cffi-1.14.3 | py38he30daa8_0 225 KB
conda-4.8.5 | py38_0 2.9 MB
cryptography-3.1.1 | py38h1ba5d50_0 557 KB
idna-2.10 | py_0 50 KB
libedit-3.1.20191231 | h14c3975_1 116 KB
libffi-3.3 | he6710b0_2 50 KB
openssl-1.1.1h | h7b6447c_0 2.5 MB
pip-20.2.2 | py38_0 1.7 MB
pycparser-2.20 | py_2 94 KB
pyopenssl-19.1.0 | py_1 48 KB
requests-2.24.0 | py_0 56 KB
ruamel_yaml-0.15.87 | py38h7b6447c_1 249 KB
setuptools-49.6.0 | py38_1 742 KB
six-1.15.0 | py_0 13 KB
sqlite-3.33.0 | h62c20be_0 1.1 MB
tk-8.6.10 | hbc83047_0 3.0 MB
tqdm-4.49.0 | py_0 55 KB
urllib3-1.25.10 | py_0 98 KB
wheel-0.35.1 | py_0 37 KB
yaml-0.2.5 | h7b6447c_0 75 KB
------------------------------------------------------------
Total: 14.2 MB
The following NEW packages will be INSTALLED:
brotlipy pkgs/main/linux-64::brotlipy-0.7.0-py38h7b6447c_1000
The following packages will be UPDATED:
ca-certificates 2020.1.1-0 --> 2020.7.22-0
certifi 2020.4.5.1-py38_0 --> 2020.6.20-py38_0
cffi 1.14.0-py38he30daa8_1 --> 1.14.3-py38he30daa8_0
conda 4.8.3-py38_0 --> 4.8.5-py38_0
cryptography 2.9.2-py38h1ba5d50_0 --> 3.1.1-py38h1ba5d50_0
idna 2.9-py_1 --> 2.10-py_0
libedit 3.1.20181209-hc058e9b_0 --> 3.1.20191231-h14c3975_1
libffi 3.3-he6710b0_1 --> 3.3-he6710b0_2
openssl 1.1.1g-h7b6447c_0 --> 1.1.1h-h7b6447c_0
pip 20.0.2-py38_3 --> 20.2.2-py38_0
pycparser 2.20-py_0 --> 2.20-py_2
pyopenssl pkgs/main/linux-64::pyopenssl-19.1.0-~ --> pkgs/main/noarch::pyopenssl-19.1.0-py_1
requests pkgs/main/linux-64::requests-2.23.0-p~ --> pkgs/main/noarch::requests-2.24.0-py_0
ruamel_yaml 0.15.87-py38h7b6447c_0 --> 0.15.87-py38h7b6447c_1
setuptools 46.4.0-py38_0 --> 49.6.0-py38_1
six pkgs/main/linux-64::six-1.14.0-py38_0 --> pkgs/main/noarch::six-1.15.0-py_0
sqlite 3.31.1-h62c20be_1 --> 3.33.0-h62c20be_0
tk 8.6.8-hbc83047_0 --> 8.6.10-hbc83047_0
tqdm 4.46.0-py_0 --> 4.49.0-py_0
urllib3 pkgs/main/linux-64::urllib3-1.25.8-py~ --> pkgs/main/noarch::urllib3-1.25.10-py_0
wheel pkgs/main/linux-64::wheel-0.34.2-py38~ --> pkgs/main/noarch::wheel-0.35.1-py_0
yaml 0.1.7-had09818_2 --> 0.2.5-h7b6447c_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /home/pkgeval/.julia/conda/3
added / updated specs:
- r-base
The following packages will be downloaded:
package | build
---------------------------|-----------------
_r-mutex-1.0.0 | anacondar_1 3 KB
cairo-1.14.12 | h8948797_3 906 KB
fontconfig-2.13.0 | h9420a91_0 227 KB
freetype-2.10.2 | h5ab3b9f_0 608 KB
fribidi-1.0.10 | h7b6447c_0 103 KB
glib-2.65.0 | h3eb4bd4_0 2.9 MB
graphite2-1.3.14 | h23475e2_0 99 KB
harfbuzz-2.4.0 | hca77d97_1 850 KB
icu-58.2 | he6710b0_3 10.5 MB
jpeg-9b | h024ee3a_2 214 KB
libgcc-7.2.0 | h69d50b8_2 269 KB
libpng-1.6.37 | hbc83047_0 278 KB
libtiff-4.1.0 | h2733197_1 449 KB
libuuid-1.0.3 | h1bed415_2 15 KB
libxcb-1.14 | h7b6447c_0 505 KB
libxml2-2.9.10 | he19cac6_1 1.2 MB
lz4-c-1.9.2 | he6710b0_1 190 KB
pango-1.45.3 | hd140c19_0 361 KB
pcre-8.44 | he6710b0_0 212 KB
pixman-0.40.0 | h7b6447c_0 370 KB
r-base-3.2.2 | 0 18.9 MB
zstd-1.4.5 | h9ceee32_0 619 KB
------------------------------------------------------------
Total: 39.6 MB
The following NEW packages will be INSTALLED:
_r-mutex pkgs/r/linux-64::_r-mutex-1.0.0-anacondar_1
cairo pkgs/main/linux-64::cairo-1.14.12-h8948797_3
fontconfig pkgs/main/linux-64::fontconfig-2.13.0-h9420a91_0
freetype pkgs/main/linux-64::freetype-2.10.2-h5ab3b9f_0
fribidi pkgs/main/linux-64::fribidi-1.0.10-h7b6447c_0
glib pkgs/main/linux-64::glib-2.65.0-h3eb4bd4_0
graphite2 pkgs/main/linux-64::graphite2-1.3.14-h23475e2_0
harfbuzz pkgs/main/linux-64::harfbuzz-2.4.0-hca77d97_1
icu pkgs/main/linux-64::icu-58.2-he6710b0_3
jpeg pkgs/main/linux-64::jpeg-9b-h024ee3a_2
libgcc pkgs/main/linux-64::libgcc-7.2.0-h69d50b8_2
libpng pkgs/main/linux-64::libpng-1.6.37-hbc83047_0
libtiff pkgs/main/linux-64::libtiff-4.1.0-h2733197_1
libuuid pkgs/main/linux-64::libuuid-1.0.3-h1bed415_2
libxcb pkgs/main/linux-64::libxcb-1.14-h7b6447c_0
libxml2 pkgs/main/linux-64::libxml2-2.9.10-he19cac6_1
lz4-c pkgs/main/linux-64::lz4-c-1.9.2-he6710b0_1
pango pkgs/main/linux-64::pango-1.45.3-hd140c19_0
pcre pkgs/main/linux-64::pcre-8.44-he6710b0_0
pixman pkgs/main/linux-64::pixman-0.40.0-h7b6447c_0
r-base pkgs/r/linux-64::r-base-3.2.2-0
zstd pkgs/main/linux-64::zstd-1.4.5-h9ceee32_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
[ Info: Installing R via Conda. To use a different R installation, set the "R_HOME" environment variable and re-run Pkg.build("RCall").
[ Info: Downloading miniconda installer ...
[ Info: Installing miniconda ...
[ Info: Running `conda config --add channels defaults --file /home/pkgeval/.julia/conda/3/condarc-julia.yml --force` in root environment
[ Info: Running `conda update -q -y conda` in root environment
[ Info: Running `conda config --add channels r --file /home/pkgeval/.julia/conda/3/condarc-julia.yml --force` in root environment
[ Info: Running `conda install -q -y r-base` in root environment
ERROR: could not load library "/home/pkgeval/.julia/conda/3/lib/R/lib/libR.so"
libreadline.so.6: cannot open shared object file: No such file or directory
ERROR: LoadError: Try adding /home/pkgeval/.julia/conda/3/lib/R/lib to the "LD_LIBRARY_PATH" environmental variable and restarting Julia.
Stacktrace:
[1] error(s::String)
@ Base ./error.jl:33
[2] validate_libR(libR::String)
@ Main ~/.julia/packages/RCall/jOnwc/deps/setup.jl:26
[3] locate_libR(Rhome::String)
@ Main ~/.julia/packages/RCall/jOnwc/deps/setup.jl:43
[4] top-level scope
@ ~/.julia/packages/RCall/jOnwc/deps/build.jl:32
[5] include(fname::String)
@ Base.MainInclude ./client.jl:444
[6] top-level scope
@ none:5
in expression starting at /home/pkgeval/.julia/packages/RCall/jOnwc/deps/build.jl:11
caused by: could not load library "/home/pkgeval/.julia/conda/3/lib/R/lib/libR.so"
libreadline.so.6: cannot open shared object file: No such file or directory
Stacktrace:
[1] dlopen(s::String, flags::UInt32; throw_error::Bool)
@ Base.Libc.Libdl ./libdl.jl:114
[2] dlopen
@ ./libdl.jl:114 [inlined]
[3] validate_libR(libR::String)
@ Main ~/.julia/packages/RCall/jOnwc/deps/setup.jl:16
[4] locate_libR(Rhome::String)
@ Main ~/.julia/packages/RCall/jOnwc/deps/setup.jl:43
[5] top-level scope
@ ~/.julia/packages/RCall/jOnwc/deps/build.jl:32
[6] include(fname::String)
@ Base.MainInclude ./client.jl:444
[7] top-level scope
@ none:5
Stacktrace:
[1] pkgerror(msg::String)
@ Pkg.Types /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/Types.jl:52
[2] (::Pkg.Operations.var"#73#78"{Bool, Pkg.Types.Context, String, Pkg.Types.PackageSpec})()
@ Pkg.Operations /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/Operations.jl:979
[3] withenv(f::Pkg.Operations.var"#73#78"{Bool, Pkg.Types.Context, String, Pkg.Types.PackageSpec}, keyvals::Pair{String, String})
@ Base ./env.jl:161
[4] (::Pkg.Operations.var"#100#104"{String, Pkg.Operations.var"#73#78"{Bool, Pkg.Types.Context, String, Pkg.Types.PackageSpec}, Pkg.Types.PackageSpec})()
@ Pkg.Operations /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/Operations.jl:1464
[5] with_temp_env(fn::Pkg.Operations.var"#100#104"{String, Pkg.Operations.var"#73#78"{Bool, Pkg.Types.Context, String, Pkg.Types.PackageSpec}, Pkg.Types.PackageSpec}, temp_env::String)
@ Pkg.Operations /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/Operations.jl:1378
[6] (::Pkg.Operations.var"#99#103"{Pkg.Operations.var"#73#78"{Bool, Pkg.Types.Context, String, Pkg.Types.PackageSpec}, Pkg.Types.Context, Pkg.Types.PackageSpec, String, Pkg.Types.Project, String})(tmp::String)
@ Pkg.Operations /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/Operations.jl:1449
[7] mktempdir(fn::Pkg.Operations.var"#99#103"{Pkg.Operations.var"#73#78"{Bool, Pkg.Types.Context, String, Pkg.Types.PackageSpec}, Pkg.Types.Context, Pkg.Types.PackageSpec, String, Pkg.Types.Project, String}, parent::String; prefix::String)
@ Base.Filesystem ./file.jl:711
[8] mktempdir(fn::Function, parent::String)
@ Base.Filesystem ./file.jl:709
[9] sandbox(fn::Function, ctx::Pkg.Types.Context, target::Pkg.Types.PackageSpec, target_path::String, sandbox_path::String, sandbox_project_override::Pkg.Types.Project)
@ Pkg.Operations /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/Operations.jl:1416
[10] build_versions(ctx::Pkg.Types.Context, uuids::Vector{Base.UUID}; might_need_to_resolve::Bool, verbose::Bool)
@ Pkg.Operations /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/Operations.jl:960
[11] build_versions(ctx::Pkg.Types.Context, uuids::Vector{Base.UUID})
@ Pkg.Operations /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/Operations.jl:899
[12] up(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}, level::Pkg.Types.UpgradeLevel)
@ Pkg.Operations /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/Operations.jl:1258
[13] up(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; level::Pkg.Types.UpgradeLevel, mode::Pkg.Types.PackageMode, update_registry::Bool, kwargs::Base.Iterators.Pairs{Symbol, Base.DevNull, Tuple{Symbol}, NamedTuple{(:io,), Tuple{Base.DevNull}}})
@ Pkg.API /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:249
[14] up(ctx::Pkg.Types.Context; kwargs::Base.Iterators.Pairs{Symbol, Any, NTuple{4, Symbol}, NamedTuple{(:level, :mode, :update_registry, :io), Tuple{Pkg.Types.UpgradeLevel, Pkg.Types.PackageMode, Bool, Base.DevNull}}})
@ Pkg.API /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:72
[15] resolve(ctx::Pkg.Types.Context; kwargs::Base.Iterators.Pairs{Symbol, Base.DevNull, Tuple{Symbol}, NamedTuple{(:io,), Tuple{Base.DevNull}}})
@ Pkg.API /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:255
[16] (::Pkg.Operations.var"#100#104"{String, Pkg.Operations.var"#110#112"{Bool, Cmd, Cmd, Nothing, Pkg.Types.Context, Vector{Tuple{String, Base.Process}}, String, Pkg.Types.PackageSpec}, Pkg.Types.PackageSpec})()
@ Pkg.Operations /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/Operations.jl:1459
[17] with_temp_env(fn::Pkg.Operations.var"#100#104"{String, Pkg.Operations.var"#110#112"{Bool, Cmd, Cmd, Nothing, Pkg.Types.Context, Vector{Tuple{String, Base.Process}}, String, Pkg.Types.PackageSpec}, Pkg.Types.PackageSpec}, temp_env::String)
@ Pkg.Operations /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/Operations.jl:1378
[18] (::Pkg.Operations.var"#99#103"{Pkg.Operations.var"#110#112"{Bool, Cmd, Cmd, Nothing, Pkg.Types.Context, Vector{Tuple{String, Base.Process}}, String, Pkg.Types.PackageSpec}, Pkg.Types.Context, Pkg.Types.PackageSpec, String, Pkg.Types.Project, String})(tmp::String)
@ Pkg.Operations /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/Operations.jl:1449
[19] mktempdir(fn::Pkg.Operations.var"#99#103"{Pkg.Operations.var"#110#112"{Bool, Cmd, Cmd, Nothing, Pkg.Types.Context, Vector{Tuple{String, Base.Process}}, String, Pkg.Types.PackageSpec}, Pkg.Types.Context, Pkg.Types.PackageSpec, String, Pkg.Types.Project, String}, parent::String; prefix::String)
@ Base.Filesystem ./file.jl:711
[20] mktempdir(fn::Function, parent::String)
@ Base.Filesystem ./file.jl:709
[21] sandbox(fn::Function, ctx::Pkg.Types.Context, target::Pkg.Types.PackageSpec, target_path::String, sandbox_path::String, sandbox_project_override::Pkg.Types.Project)
@ Pkg.Operations /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/Operations.jl:1416
[22] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing)
@ Pkg.Operations /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/Operations.jl:1580
[23] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, kwargs::Base.Iterators.Pairs{Union{}, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ Pkg.API /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:331
[24] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec})
@ Pkg.API /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:318
[25] #test#62
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:68 [inlined]
[26] test
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:68 [inlined]
[27] #test#61
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:66 [inlined]
[28] test
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:66 [inlined]
[29] test(pkg::String; kwargs::Base.Iterators.Pairs{Union{}, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ Pkg.API /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:65
[30] test(pkg::String)
@ Pkg.API /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:65
[31] top-level scope
@ none:19
caused by: Unsatisfiable requirements detected for package Phylo [aea672f4]:
Phylo [aea672f4] log:
├─possible versions are: 0.3.1-0.4.3 or uninstalled
├─restricted to versions 0.4.1-0.4 by an explicit requirement, leaving only versions 0.4.1-0.4.3
└─restricted by compatibility requirements with DataStructures [864edb3b] to versions: uninstalled — no versions left
└─DataStructures [864edb3b] log:
├─possible versions are: 0.9.0-0.18.6 or uninstalled
└─restricted to versions 0.18.6 by an explicit requirement, leaving only versions 0.18.6
Stacktrace:
[1] propagate_constraints!(graph::Pkg.Resolve.Graph, sources::Set{Int64}; log_events::Bool)
@ Pkg.Resolve /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/Resolve/graphtype.jl:1048
[2] propagate_constraints!
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/Resolve/graphtype.jl:989 [inlined]
[3] simplify_graph!(graph::Pkg.Resolve.Graph, sources::Set{Int64}; clean_graph::Bool)
@ Pkg.Resolve /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/Resolve/graphtype.jl:1503
[4] simplify_graph!
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/Resolve/graphtype.jl:1503 [inlined]
[5] resolve_versions!(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec})
@ Pkg.Operations /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/Operations.jl:381
[6] up(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}, level::Pkg.Types.UpgradeLevel)
@ Pkg.Operations /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/Operations.jl:1252
[7] up(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; level::Pkg.Types.UpgradeLevel, mode::Pkg.Types.PackageMode, update_registry::Bool, kwargs::Base.Iterators.Pairs{Symbol, Base.DevNull, Tuple{Symbol}, NamedTuple{(:io,), Tuple{Base.DevNull}}})
@ Pkg.API /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:249
[8] up(ctx::Pkg.Types.Context; kwargs::Base.Iterators.Pairs{Symbol, Any, NTuple{4, Symbol}, NamedTuple{(:level, :mode, :update_registry, :io), Tuple{Pkg.Types.UpgradeLevel, Pkg.Types.PackageMode, Bool, Base.DevNull}}})
@ Pkg.API /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:72
[9] resolve(ctx::Pkg.Types.Context; kwargs::Base.Iterators.Pairs{Symbol, Base.DevNull, Tuple{Symbol}, NamedTuple{(:io,), Tuple{Base.DevNull}}})
@ Pkg.API /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:255
[10] resolve(; kwargs::Base.Iterators.Pairs{Symbol, Base.DevNull, Tuple{Symbol}, NamedTuple{(:io,), Tuple{Base.DevNull}}})
@ Pkg.API /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:253
[11] (::Pkg.Operations.var"#100#104"{String, Pkg.Operations.var"#110#112"{Bool, Cmd, Cmd, Nothing, Pkg.Types.Context, Vector{Tuple{String, Base.Process}}, String, Pkg.Types.PackageSpec}, Pkg.Types.PackageSpec})()
@ Pkg.Operations /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/Operations.jl:1454
[12] with_temp_env(fn::Pkg.Operations.var"#100#104"{String, Pkg.Operations.var"#110#112"{Bool, Cmd, Cmd, Nothing, Pkg.Types.Context, Vector{Tuple{String, Base.Process}}, String, Pkg.Types.PackageSpec}, Pkg.Types.PackageSpec}, temp_env::String)
@ Pkg.Operations /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/Operations.jl:1378
[13] (::Pkg.Operations.var"#99#103"{Pkg.Operations.var"#110#112"{Bool, Cmd, Cmd, Nothing, Pkg.Types.Context, Vector{Tuple{String, Base.Process}}, String, Pkg.Types.PackageSpec}, Pkg.Types.Context, Pkg.Types.PackageSpec, String, Pkg.Types.Project, String})(tmp::String)
@ Pkg.Operations /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/Operations.jl:1449
[14] mktempdir(fn::Pkg.Operations.var"#99#103"{Pkg.Operations.var"#110#112"{Bool, Cmd, Cmd, Nothing, Pkg.Types.Context, Vector{Tuple{String, Base.Process}}, String, Pkg.Types.PackageSpec}, Pkg.Types.Context, Pkg.Types.PackageSpec, String, Pkg.Types.Project, String}, parent::String; prefix::String)
@ Base.Filesystem ./file.jl:711
[15] mktempdir(fn::Function, parent::String)
@ Base.Filesystem ./file.jl:709
[16] sandbox(fn::Function, ctx::Pkg.Types.Context, target::Pkg.Types.PackageSpec, target_path::String, sandbox_path::String, sandbox_project_override::Pkg.Types.Project)
@ Pkg.Operations /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/Operations.jl:1416
[17] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing)
@ Pkg.Operations /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/Operations.jl:1580
[18] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, kwargs::Base.Iterators.Pairs{Union{}, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ Pkg.API /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:331
[19] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec})
@ Pkg.API /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:318
[20] #test#62
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:68 [inlined]
[21] test
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:68 [inlined]
[22] #test#61
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:66 [inlined]
[23] test
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:66 [inlined]
[24] test(pkg::String; kwargs::Base.Iterators.Pairs{Union{}, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ Pkg.API /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:65
[25] test(pkg::String)
@ Pkg.API /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:65
[26] top-level scope
@ none:19