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1.6.0-DEV-22b5d93b2b.log
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Julia Version 1.6.0-DEV.1069
Commit 22b5d93b2b (2020-09-28 17:33 UTC)
Platform Info:
OS: Linux (x86_64-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-10.0.1 (ORCJIT, skylake-avx512)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
Installed CompilerSupportLibraries_jll ─ v0.3.3+0
Installed Strided ────────────────────── v1.0.1
Installed Conda ──────────────────────── v1.4.1
Installed MacroTools ─────────────────── v0.5.5
Installed PyCall ─────────────────────── v1.92.0
Installed Devito ─────────────────────── v0.1.0
Installed JSON ───────────────────────── v0.21.1
Installed DocStringExtensions ────────── v0.8.3
Installed VersionParsing ─────────────── v1.2.0
Installed MPICH_jll ──────────────────── v3.3.2+10
Installed TupleTools ─────────────────── v1.2.0
Installed Parsers ────────────────────── v1.0.10
Installed OpenMPI_jll ────────────────── v4.0.2+2
Installed MicrosoftMPI_jll ───────────── v10.1.2+3
Installed Requires ───────────────────── v1.0.3
Installed MPI ────────────────────────── v0.15.1
Updating `~/.julia/environments/v1.6/Project.toml`
[06ed14b1] + Devito v0.1.0
Updating `~/.julia/environments/v1.6/Manifest.toml`
[e66e0078] + CompilerSupportLibraries_jll v0.3.3+0
[8f4d0f93] + Conda v1.4.1
[06ed14b1] + Devito v0.1.0
[ffbed154] + DocStringExtensions v0.8.3
[682c06a0] + JSON v0.21.1
[da04e1cc] + MPI v0.15.1
[7cb0a576] + MPICH_jll v3.3.2+10
[1914dd2f] + MacroTools v0.5.5
[9237b28f] + MicrosoftMPI_jll v10.1.2+3
[fe0851c0] + OpenMPI_jll v4.0.2+2
[69de0a69] + Parsers v1.0.10
[438e738f] + PyCall v1.92.0
[ae029012] + Requires v1.0.3
[5e0ebb24] + Strided v1.0.1
[9d95972d] + TupleTools v1.2.0
[81def892] + VersionParsing v1.2.0
[56f22d72] + Artifacts
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8ba89e20] + Distributed
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[6462fe0b] + Sockets
[fa267f1f] + TOML
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building MPI ───→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/0bd36605eea7a4d9c3ae0d7f21c10210dd54cb83/build.log`
Building Conda ─→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/7a58bb32ce5d85f8bf7559aa7c2842f9aecf52fc/build.log`
Building PyCall → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/b4e471a2b1739dba687d22d3293aa16bc5f3925b/build.log`
Building Devito → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/3c2e4634f0f7dcbf9adb4d6cc3b3cdc52ac83cc1/build.log`
ERROR: Error building `Devito`:
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done
# All requested packages already installed.
Collecting git+https://github.com/devitocodes/devito.git
Cloning https://github.com/devitocodes/devito.git to /tmp/pip-req-build-ru5of48b
Requirement already satisfied: pip>=9.0.1 in /home/pkgeval/.julia/conda/3/lib/python3.8/site-packages (from devito==4.2.3+164.gf5833fd8) (20.2.2)
Requirement already satisfied: numpy>1.16 in /home/pkgeval/.julia/conda/3/lib/python3.8/site-packages (from devito==4.2.3+164.gf5833fd8) (1.19.1)
Collecting sympy<1.6
Downloading sympy-1.5.1-py2.py3-none-any.whl (5.6 MB)
Collecting scipy
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Collecting psutil>=5.1.0
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Collecting ipykernel
Downloading ipykernel-5.3.4-py3-none-any.whl (120 kB)
Requirement already satisfied: six in /home/pkgeval/.julia/conda/3/lib/python3.8/site-packages (from nbval->devito==4.2.3+164.gf5833fd8) (1.15.0)
Collecting jupyter-client
Downloading jupyter_client-6.1.7-py3-none-any.whl (108 kB)
Collecting pytools>=2015.1.2
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Collecting appdirs>=1.4.0
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Requirement already satisfied: requests>=2.7.9 in /home/pkgeval/.julia/conda/3/lib/python3.8/site-packages (from codecov->devito==4.2.3+164.gf5833fd8) (2.24.0)
Collecting contexttimer
Downloading contexttimer-0.3.3.tar.gz (4.9 kB)
Collecting pyyaml
Downloading PyYAML-5.3.1.tar.gz (269 kB)
Collecting zict>=0.1.3
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Collecting dask>=2.9.0
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Requirement already satisfied: setuptools in /home/pkgeval/.julia/conda/3/lib/python3.8/site-packages (from distributed<2.28->devito==4.2.3+164.gf5833fd8) (49.6.0.post20200925)
Collecting cloudpickle>=1.5.0
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Collecting msgpack>=0.6.0
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Collecting tblib>=1.6.0
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Collecting toolz>=0.8.2
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Collecting tornado>=6.0.3; python_version >= "3.8"
Downloading tornado-6.0.4.tar.gz (496 kB)
Collecting pyparsing>=2.0.2
Downloading pyparsing-2.4.7-py2.py3-none-any.whl (67 kB)
Collecting ipython-genutils
Downloading ipython_genutils-0.2.0-py2.py3-none-any.whl (26 kB)
Collecting jupyter-core
Downloading jupyter_core-4.6.3-py2.py3-none-any.whl (83 kB)
Collecting traitlets>=4.1
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Collecting jsonschema!=2.5.0,>=2.4
Downloading jsonschema-3.2.0-py2.py3-none-any.whl (56 kB)
Collecting ipython>=5.0.0
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Collecting python-dateutil>=2.1
Downloading python_dateutil-2.8.1-py2.py3-none-any.whl (227 kB)
Collecting pyzmq>=13
Downloading pyzmq-19.0.2-cp38-cp38-manylinux1_x86_64.whl (1.1 MB)
Collecting decorator>=3.2.0
Downloading decorator-4.4.2-py2.py3-none-any.whl (9.2 kB)
Requirement already satisfied: certifi>=2017.4.17 in /home/pkgeval/.julia/conda/3/lib/python3.8/site-packages (from requests>=2.7.9->codecov->devito==4.2.3+164.gf5833fd8) (2020.6.20)
Requirement already satisfied: chardet<4,>=3.0.2 in /home/pkgeval/.julia/conda/3/lib/python3.8/site-packages (from requests>=2.7.9->codecov->devito==4.2.3+164.gf5833fd8) (3.0.4)
Requirement already satisfied: idna<3,>=2.5 in /home/pkgeval/.julia/conda/3/lib/python3.8/site-packages (from requests>=2.7.9->codecov->devito==4.2.3+164.gf5833fd8) (2.10)
Requirement already satisfied: urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 in /home/pkgeval/.julia/conda/3/lib/python3.8/site-packages (from requests>=2.7.9->codecov->devito==4.2.3+164.gf5833fd8) (1.25.10)
Collecting heapdict
Downloading HeapDict-1.0.1-py3-none-any.whl (3.9 kB)
Collecting pyrsistent>=0.14.0
Downloading pyrsistent-0.17.3.tar.gz (106 kB)
Collecting pygments
Downloading Pygments-2.7.1-py3-none-any.whl (944 kB)
Collecting prompt-toolkit!=3.0.0,!=3.0.1,<3.1.0,>=2.0.0
Downloading prompt_toolkit-3.0.7-py3-none-any.whl (355 kB)
Collecting pexpect>4.3; sys_platform != "win32"
Downloading pexpect-4.8.0-py2.py3-none-any.whl (59 kB)
Collecting pickleshare
Downloading pickleshare-0.7.5-py2.py3-none-any.whl (6.9 kB)
Collecting backcall
Downloading backcall-0.2.0-py2.py3-none-any.whl (11 kB)
Collecting jedi>=0.10
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Collecting wcwidth
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Collecting ptyprocess>=0.5
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Collecting parso<0.8.0,>=0.7.0
Downloading parso-0.7.1-py2.py3-none-any.whl (109 kB)
Building wheels for collected packages: devito, psutil, py-cpuinfo, cgen, codepy, pyrevolve, mpmath, pytools, contexttimer, pyyaml, tornado, pyrsistent
Building wheel for devito (setup.py): started
Building wheel for devito (setup.py): finished with status 'done'
Created wheel for devito: filename=devito-4.2.3+164.gf5833fd8-py3-none-any.whl size=399979 sha256=92a5ad2aa215b86908f1b09e1271f1d0800885b4ba7df0d61857e20987910bd9
Stored in directory: /tmp/pip-ephem-wheel-cache-t3_rdda6/wheels/18/38/2f/35f2aae0f3834b01341cd9272b43d4cf778e6f228808cf31b0
Building wheel for psutil (setup.py): started
Building wheel for psutil (setup.py): finished with status 'done'
Created wheel for psutil: filename=psutil-5.7.2-cp38-cp38-linux_x86_64.whl size=284095 sha256=583f6bfdeb7a5d3bc9a17b4005d80407d395ecc2953103420c0ec98804fc86f0
Stored in directory: /home/pkgeval/.cache/pip/wheels/91/cf/b0/0c9998060b55ca80ea7a50a8639c3bdc6ba886eeff014bc9ac
Building wheel for py-cpuinfo (setup.py): started
Building wheel for py-cpuinfo (setup.py): finished with status 'done'
Created wheel for py-cpuinfo: filename=py_cpuinfo-7.0.0-py3-none-any.whl size=20070 sha256=93da0c338a1e373160c0edd996618c8b4bd23f6f3e4beb6ec885d5385e2dfff2
Stored in directory: /home/pkgeval/.cache/pip/wheels/b4/99/9f/8eb77fdf759c1380719071722f2c37dd0fa1f6aa477c51cb6c
Building wheel for cgen (setup.py): started
Building wheel for cgen (setup.py): finished with status 'done'
Created wheel for cgen: filename=cgen-2020.1-py3-none-any.whl size=15822 sha256=55affa30d87c3d2e87eb4a6ab666cf06195753c35ca0a493143f192830ab6156
Stored in directory: /home/pkgeval/.cache/pip/wheels/f1/7c/34/5ea06ad75758a23a959da1268dad81f7e1191b424fb4318dd2
Building wheel for codepy (setup.py): started
Building wheel for codepy (setup.py): finished with status 'done'
Created wheel for codepy: filename=codepy-2019.1-py3-none-any.whl size=19313 sha256=225b0a04157c0adf978a15de500a65e52a2289c72bdf9152bd8778ba2b6169f2
Stored in directory: /home/pkgeval/.cache/pip/wheels/42/1f/3f/8c9d6eff98b2bacbf45771a1764eb26881c2d88c5d4e0ec75d
Building wheel for pyrevolve (setup.py): started
Building wheel for pyrevolve (setup.py): finished with status 'done'
Created wheel for pyrevolve: filename=pyrevolve-2.2-cp38-cp38-linux_x86_64.whl size=276306 sha256=887756ca8d729837e94111f827fcfaca0150f75ac9ccbb7389d3627ecd95a315
Stored in directory: /home/pkgeval/.cache/pip/wheels/a6/f0/f9/a7cce2ae7bb69c398c146b9aaa38f3837abee3f63094297218
Building wheel for mpmath (setup.py): started
Building wheel for mpmath (setup.py): finished with status 'done'
Created wheel for mpmath: filename=mpmath-1.1.0-py3-none-any.whl size=532239 sha256=c018effb638950402b46acca4aac8d4df041a851a81226ac1e25c7f5d3a3b6d4
Stored in directory: /home/pkgeval/.cache/pip/wheels/29/2c/1c/d2e4580cde2743b0aef389e936ac21a2db92921ddbca53faa1
Building wheel for pytools (setup.py): started
Building wheel for pytools (setup.py): finished with status 'done'
Created wheel for pytools: filename=pytools-2020.4-py2.py3-none-any.whl size=67175 sha256=c4dde4dcd5abb3cc91bbd918cbdddcafeb96b75ad7493cbebbc985abe51e6bc3
Stored in directory: /home/pkgeval/.cache/pip/wheels/ae/12/ea/ca7bd44d349de02b071a0f5ac0d927f3d582e21bdcc06d2f5e
Building wheel for contexttimer (setup.py): started
Building wheel for contexttimer (setup.py): finished with status 'done'
Created wheel for contexttimer: filename=contexttimer-0.3.3-py3-none-any.whl size=5816 sha256=d1c5dcf3e2372f6044467eabaf46b2fbe1cca4ca10598a3b6e8e01ac820f4d29
Stored in directory: /home/pkgeval/.cache/pip/wheels/70/dd/09/4924e45dc5912f71b971b6790958b5e82f88c9db95a7cb4969
Building wheel for pyyaml (setup.py): started
Building wheel for pyyaml (setup.py): finished with status 'done'
Created wheel for pyyaml: filename=PyYAML-5.3.1-cp38-cp38-linux_x86_64.whl size=44619 sha256=82bd7a3dcdaa83ea665327a5781fdc7ad6fc99b5e81cfd495b4f9f8a2ae87325
Stored in directory: /home/pkgeval/.cache/pip/wheels/13/90/db/290ab3a34f2ef0b5a0f89235dc2d40fea83e77de84ed2dc05c
Building wheel for tornado (setup.py): started
Building wheel for tornado (setup.py): finished with status 'done'
Created wheel for tornado: filename=tornado-6.0.4-cp38-cp38-linux_x86_64.whl size=427621 sha256=92855e758c16cf1cbf939273968c5812bbd6c906ca95fb6417d19b1ac674bab9
Stored in directory: /home/pkgeval/.cache/pip/wheels/88/79/e5/598ba17e85eccf2626eab62e4ee8452895636cd542650d450d
Building wheel for pyrsistent (setup.py): started
Building wheel for pyrsistent (setup.py): finished with status 'done'
Created wheel for pyrsistent: filename=pyrsistent-0.17.3-cp38-cp38-linux_x86_64.whl size=119631 sha256=bf776e0d619c1094dcd6fb154f8307981d49228a522ce84577f18321435d8dc2
Stored in directory: /home/pkgeval/.cache/pip/wheels/3d/22/08/7042eb6309c650c7b53615d5df5cc61f1ea9680e7edd3a08d2
Successfully built devito psutil py-cpuinfo cgen codepy pyrevolve mpmath pytools contexttimer pyyaml tornado pyrsistent
Installing collected packages: mpmath, sympy, scipy, pluggy, py, toml, attrs, iniconfig, pyparsing, packaging, pytest, pytest-runner, mccabe, pyflakes, pycodestyle, flake8, ipython-genutils, traitlets, jupyter-core, pyrsistent, jsonschema, nbformat, coverage, pygments, wcwidth, prompt-toolkit, ptyprocess, pexpect, decorator, pickleshare, backcall, parso, jedi, ipython, tornado, python-dateutil, pyzmq, jupyter-client, ipykernel, nbval, cached-property, psutil, py-cpuinfo, appdirs, pytools, cgen, codepy, click, codecov, pytest-cov, multidict, anytree, contexttimer, pyrevolve, pyyaml, heapdict, zict, dask, cloudpickle, sortedcontainers, msgpack, tblib, toolz, distributed, devito
Successfully installed anytree-2.8.0 appdirs-1.4.4 attrs-20.2.0 backcall-0.2.0 cached-property-1.5.2 cgen-2020.1 click-7.1.2 cloudpickle-1.6.0 codecov-2.1.9 codepy-2019.1 contexttimer-0.3.3 coverage-5.3 dask-2.28.0 decorator-4.4.2 devito-4.2.3+164.gf5833fd8 distributed-2.27.0 flake8-3.8.3 heapdict-1.0.1 iniconfig-1.0.1 ipykernel-5.3.4 ipython-7.18.1 ipython-genutils-0.2.0 jedi-0.17.2 jsonschema-3.2.0 jupyter-client-6.1.7 jupyter-core-4.6.3 mccabe-0.6.1 mpmath-1.1.0 msgpack-1.0.0 multidict-4.7.6 nbformat-5.0.7 nbval-0.9.6 packaging-20.4 parso-0.7.1 pexpect-4.8.0 pickleshare-0.7.5 pluggy-0.13.1 prompt-toolkit-3.0.7 psutil-5.7.2 ptyprocess-0.6.0 py-1.9.0 py-cpuinfo-7.0.0 pycodestyle-2.6.0 pyflakes-2.2.0 pygments-2.7.1 pyparsing-2.4.7 pyrevolve-2.2 pyrsistent-0.17.3 pytest-6.1.0 pytest-cov-2.10.1 pytest-runner-5.2 python-dateutil-2.8.1 pytools-2020.4 pyyaml-5.3.1 pyzmq-19.0.2 scipy-1.5.2 sortedcontainers-2.2.2 sympy-1.5.1 tblib-1.7.0 toml-0.10.1 toolz-0.11.1 tornado-6.0.4 traitlets-5.0.4 wcwidth-0.2.5 zict-2.0.0
Collecting mpi4py
Downloading mpi4py-3.0.3.tar.gz (1.4 MB)
Building wheels for collected packages: mpi4py
Building wheel for mpi4py (setup.py): started
Building wheel for mpi4py (setup.py): finished with status 'error'
ERROR: Command errored out with exit status 1:
command: /home/pkgeval/.julia/conda/3/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-kqcdy0bu/mpi4py/setup.py'"'"'; __file__='"'"'/tmp/pip-install-kqcdy0bu/mpi4py/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-qd_e2wog
cwd: /tmp/pip-install-kqcdy0bu/mpi4py/
Complete output (126 lines):
running bdist_wheel
running build
running build_src
running build_py
creating build
creating build/lib.linux-x86_64-3.8
creating build/lib.linux-x86_64-3.8/mpi4py
copying src/mpi4py/run.py -> build/lib.linux-x86_64-3.8/mpi4py
copying src/mpi4py/__main__.py -> build/lib.linux-x86_64-3.8/mpi4py
copying src/mpi4py/bench.py -> build/lib.linux-x86_64-3.8/mpi4py
copying src/mpi4py/__init__.py -> build/lib.linux-x86_64-3.8/mpi4py
creating build/lib.linux-x86_64-3.8/mpi4py/futures
copying src/mpi4py/futures/__main__.py -> build/lib.linux-x86_64-3.8/mpi4py/futures
copying src/mpi4py/futures/_base.py -> build/lib.linux-x86_64-3.8/mpi4py/futures
copying src/mpi4py/futures/server.py -> build/lib.linux-x86_64-3.8/mpi4py/futures
copying src/mpi4py/futures/pool.py -> build/lib.linux-x86_64-3.8/mpi4py/futures
copying src/mpi4py/futures/_lib.py -> build/lib.linux-x86_64-3.8/mpi4py/futures
copying src/mpi4py/futures/__init__.py -> build/lib.linux-x86_64-3.8/mpi4py/futures
copying src/mpi4py/futures/aplus.py -> build/lib.linux-x86_64-3.8/mpi4py/futures
copying src/mpi4py/MPI.pxd -> build/lib.linux-x86_64-3.8/mpi4py
copying src/mpi4py/__init__.pxd -> build/lib.linux-x86_64-3.8/mpi4py
copying src/mpi4py/libmpi.pxd -> build/lib.linux-x86_64-3.8/mpi4py
creating build/lib.linux-x86_64-3.8/mpi4py/include
creating build/lib.linux-x86_64-3.8/mpi4py/include/mpi4py
copying src/mpi4py/include/mpi4py/mpi4py.MPI_api.h -> build/lib.linux-x86_64-3.8/mpi4py/include/mpi4py
copying src/mpi4py/include/mpi4py/mpi4py.MPI.h -> build/lib.linux-x86_64-3.8/mpi4py/include/mpi4py
copying src/mpi4py/include/mpi4py/mpi4py.h -> build/lib.linux-x86_64-3.8/mpi4py/include/mpi4py
copying src/mpi4py/include/mpi4py/mpi4py.i -> build/lib.linux-x86_64-3.8/mpi4py/include/mpi4py
copying src/mpi4py/include/mpi4py/mpi.pxi -> build/lib.linux-x86_64-3.8/mpi4py/include/mpi4py
running build_clib
MPI configuration: [mpi] from 'mpi.cfg'
checking for library 'lmpe' ...
gcc -pthread -B /home/pkgeval/.julia/conda/3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o
gcc -pthread -B /home/pkgeval/.julia/conda/3/compiler_compat -Wl,--sysroot=/ _configtest.o -llmpe -o _configtest
/home/pkgeval/.julia/conda/3/compiler_compat/ld: cannot find -llmpe
collect2: error: ld returned 1 exit status
failure.
removing: _configtest.c _configtest.o
building 'mpe' dylib library
creating build/temp.linux-x86_64-3.8
creating build/temp.linux-x86_64-3.8/src
creating build/temp.linux-x86_64-3.8/src/lib-pmpi
gcc -pthread -B /home/pkgeval/.julia/conda/3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c src/lib-pmpi/mpe.c -o build/temp.linux-x86_64-3.8/src/lib-pmpi/mpe.o
creating build/lib.linux-x86_64-3.8/mpi4py/lib-pmpi
gcc -pthread -shared -B /home/pkgeval/.julia/conda/3/compiler_compat -L/home/pkgeval/.julia/conda/3/lib -Wl,-rpath=/home/pkgeval/.julia/conda/3/lib -Wl,--no-as-needed -Wl,--sysroot=/ -Wl,--no-as-needed build/temp.linux-x86_64-3.8/src/lib-pmpi/mpe.o -o build/lib.linux-x86_64-3.8/mpi4py/lib-pmpi/libmpe.so
checking for library 'vt-mpi' ...
gcc -pthread -B /home/pkgeval/.julia/conda/3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o
gcc -pthread -B /home/pkgeval/.julia/conda/3/compiler_compat -Wl,--sysroot=/ _configtest.o -lvt-mpi -o _configtest
/home/pkgeval/.julia/conda/3/compiler_compat/ld: cannot find -lvt-mpi
collect2: error: ld returned 1 exit status
failure.
removing: _configtest.c _configtest.o
checking for library 'vt.mpi' ...
gcc -pthread -B /home/pkgeval/.julia/conda/3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o
gcc -pthread -B /home/pkgeval/.julia/conda/3/compiler_compat -Wl,--sysroot=/ _configtest.o -lvt.mpi -o _configtest
/home/pkgeval/.julia/conda/3/compiler_compat/ld: cannot find -lvt.mpi
collect2: error: ld returned 1 exit status
failure.
removing: _configtest.c _configtest.o
building 'vt' dylib library
gcc -pthread -B /home/pkgeval/.julia/conda/3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c src/lib-pmpi/vt.c -o build/temp.linux-x86_64-3.8/src/lib-pmpi/vt.o
gcc -pthread -shared -B /home/pkgeval/.julia/conda/3/compiler_compat -L/home/pkgeval/.julia/conda/3/lib -Wl,-rpath=/home/pkgeval/.julia/conda/3/lib -Wl,--no-as-needed -Wl,--sysroot=/ -Wl,--no-as-needed build/temp.linux-x86_64-3.8/src/lib-pmpi/vt.o -o build/lib.linux-x86_64-3.8/mpi4py/lib-pmpi/libvt.so
checking for library 'vt-mpi' ...
gcc -pthread -B /home/pkgeval/.julia/conda/3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o
gcc -pthread -B /home/pkgeval/.julia/conda/3/compiler_compat -Wl,--sysroot=/ _configtest.o -lvt-mpi -o _configtest
/home/pkgeval/.julia/conda/3/compiler_compat/ld: cannot find -lvt-mpi
collect2: error: ld returned 1 exit status
failure.
removing: _configtest.c _configtest.o
checking for library 'vt.mpi' ...
gcc -pthread -B /home/pkgeval/.julia/conda/3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o
gcc -pthread -B /home/pkgeval/.julia/conda/3/compiler_compat -Wl,--sysroot=/ _configtest.o -lvt.mpi -o _configtest
/home/pkgeval/.julia/conda/3/compiler_compat/ld: cannot find -lvt.mpi
collect2: error: ld returned 1 exit status
failure.
removing: _configtest.c _configtest.o
building 'vt-mpi' dylib library
gcc -pthread -B /home/pkgeval/.julia/conda/3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c src/lib-pmpi/vt-mpi.c -o build/temp.linux-x86_64-3.8/src/lib-pmpi/vt-mpi.o
gcc -pthread -shared -B /home/pkgeval/.julia/conda/3/compiler_compat -L/home/pkgeval/.julia/conda/3/lib -Wl,-rpath=/home/pkgeval/.julia/conda/3/lib -Wl,--no-as-needed -Wl,--sysroot=/ -Wl,--no-as-needed build/temp.linux-x86_64-3.8/src/lib-pmpi/vt-mpi.o -o build/lib.linux-x86_64-3.8/mpi4py/lib-pmpi/libvt-mpi.so
checking for library 'vt-hyb' ...
gcc -pthread -B /home/pkgeval/.julia/conda/3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o
gcc -pthread -B /home/pkgeval/.julia/conda/3/compiler_compat -Wl,--sysroot=/ _configtest.o -lvt-hyb -o _configtest
/home/pkgeval/.julia/conda/3/compiler_compat/ld: cannot find -lvt-hyb
collect2: error: ld returned 1 exit status
failure.
removing: _configtest.c _configtest.o
checking for library 'vt.ompi' ...
gcc -pthread -B /home/pkgeval/.julia/conda/3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o
gcc -pthread -B /home/pkgeval/.julia/conda/3/compiler_compat -Wl,--sysroot=/ _configtest.o -lvt.ompi -o _configtest
/home/pkgeval/.julia/conda/3/compiler_compat/ld: cannot find -lvt.ompi
collect2: error: ld returned 1 exit status
failure.
removing: _configtest.c _configtest.o
building 'vt-hyb' dylib library
gcc -pthread -B /home/pkgeval/.julia/conda/3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c src/lib-pmpi/vt-hyb.c -o build/temp.linux-x86_64-3.8/src/lib-pmpi/vt-hyb.o
gcc -pthread -shared -B /home/pkgeval/.julia/conda/3/compiler_compat -L/home/pkgeval/.julia/conda/3/lib -Wl,-rpath=/home/pkgeval/.julia/conda/3/lib -Wl,--no-as-needed -Wl,--sysroot=/ -Wl,--no-as-needed build/temp.linux-x86_64-3.8/src/lib-pmpi/vt-hyb.o -o build/lib.linux-x86_64-3.8/mpi4py/lib-pmpi/libvt-hyb.so
running build_ext
MPI configuration: [mpi] from 'mpi.cfg'
checking for dlopen() availability ...
checking for header 'dlfcn.h' ...
gcc -pthread -B /home/pkgeval/.julia/conda/3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/home/pkgeval/.julia/conda/3/include/python3.8 -c _configtest.c -o _configtest.o
success!
removing: _configtest.c _configtest.o
success!
checking for library 'dl' ...
gcc -pthread -B /home/pkgeval/.julia/conda/3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/home/pkgeval/.julia/conda/3/include/python3.8 -c _configtest.c -o _configtest.o
gcc -pthread -B /home/pkgeval/.julia/conda/3/compiler_compat -Wl,--sysroot=/ _configtest.o -Lbuild/temp.linux-x86_64-3.8 -ldl -o _configtest
success!
removing: _configtest.c _configtest.o _configtest
checking for function 'dlopen' ...
gcc -pthread -B /home/pkgeval/.julia/conda/3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/home/pkgeval/.julia/conda/3/include/python3.8 -c _configtest.c -o _configtest.o
gcc -pthread -B /home/pkgeval/.julia/conda/3/compiler_compat -Wl,--sysroot=/ _configtest.o -Lbuild/temp.linux-x86_64-3.8 -ldl -o _configtest
success!
removing: _configtest.c _configtest.o _configtest
building 'mpi4py.dl' extension
gcc -pthread -B /home/pkgeval/.julia/conda/3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -DHAVE_DLFCN_H=1 -DHAVE_DLOPEN=1 -I/home/pkgeval/.julia/conda/3/include/python3.8 -c src/dynload.c -o build/temp.linux-x86_64-3.8/src/dynload.o
gcc -pthread -shared -B /home/pkgeval/.julia/conda/3/compiler_compat -L/home/pkgeval/.julia/conda/3/lib -Wl,-rpath=/home/pkgeval/.julia/conda/3/lib -Wl,--no-as-needed -Wl,--sysroot=/ build/temp.linux-x86_64-3.8/src/dynload.o -Lbuild/temp.linux-x86_64-3.8 -ldl -o build/lib.linux-x86_64-3.8/mpi4py/dl.cpython-38-x86_64-linux-gnu.so
checking for MPI compile and link ...
gcc -pthread -B /home/pkgeval/.julia/conda/3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/home/pkgeval/.julia/conda/3/include/python3.8 -c _configtest.c -o _configtest.o
_configtest.c:2:10: fatal error: mpi.h: No such file or directory
#include <mpi.h>
^~~~~~~
compilation terminated.
failure.
removing: _configtest.c _configtest.o
error: Cannot compile MPI programs. Check your configuration!!!
----------------------------------------
ERROR: Failed building wheel for mpi4py
Running setup.py clean for mpi4py
Failed to build mpi4py
DEPRECATION: Could not build wheels for mpi4py which do not use PEP 517. pip will fall back to legacy 'setup.py install' for these. pip 21.0 will remove support for this functionality. A possible replacement is to fix the wheel build issue reported above. You can find discussion regarding this at https://github.com/pypa/pip/issues/8368.
Installing collected packages: mpi4py
Running setup.py install for mpi4py: started
Running setup.py install for mpi4py: finished with status 'error'
ERROR: Command errored out with exit status 1:
command: /home/pkgeval/.julia/conda/3/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-kqcdy0bu/mpi4py/setup.py'"'"'; __file__='"'"'/tmp/pip-install-kqcdy0bu/mpi4py/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-gd9h9a6d/install-record.txt --single-version-externally-managed --compile --install-headers /home/pkgeval/.julia/conda/3/include/python3.8/mpi4py
cwd: /tmp/pip-install-kqcdy0bu/mpi4py/
Complete output (126 lines):
running install
running build
running build_src
running build_py
creating build
creating build/lib.linux-x86_64-3.8
creating build/lib.linux-x86_64-3.8/mpi4py
copying src/mpi4py/run.py -> build/lib.linux-x86_64-3.8/mpi4py
copying src/mpi4py/__main__.py -> build/lib.linux-x86_64-3.8/mpi4py
copying src/mpi4py/bench.py -> build/lib.linux-x86_64-3.8/mpi4py
copying src/mpi4py/__init__.py -> build/lib.linux-x86_64-3.8/mpi4py
creating build/lib.linux-x86_64-3.8/mpi4py/futures
copying src/mpi4py/futures/__main__.py -> build/lib.linux-x86_64-3.8/mpi4py/futures
copying src/mpi4py/futures/_base.py -> build/lib.linux-x86_64-3.8/mpi4py/futures
copying src/mpi4py/futures/server.py -> build/lib.linux-x86_64-3.8/mpi4py/futures
copying src/mpi4py/futures/pool.py -> build/lib.linux-x86_64-3.8/mpi4py/futures
copying src/mpi4py/futures/_lib.py -> build/lib.linux-x86_64-3.8/mpi4py/futures
copying src/mpi4py/futures/__init__.py -> build/lib.linux-x86_64-3.8/mpi4py/futures
copying src/mpi4py/futures/aplus.py -> build/lib.linux-x86_64-3.8/mpi4py/futures
copying src/mpi4py/MPI.pxd -> build/lib.linux-x86_64-3.8/mpi4py
copying src/mpi4py/__init__.pxd -> build/lib.linux-x86_64-3.8/mpi4py
copying src/mpi4py/libmpi.pxd -> build/lib.linux-x86_64-3.8/mpi4py
creating build/lib.linux-x86_64-3.8/mpi4py/include
creating build/lib.linux-x86_64-3.8/mpi4py/include/mpi4py
copying src/mpi4py/include/mpi4py/mpi4py.MPI_api.h -> build/lib.linux-x86_64-3.8/mpi4py/include/mpi4py
copying src/mpi4py/include/mpi4py/mpi4py.MPI.h -> build/lib.linux-x86_64-3.8/mpi4py/include/mpi4py
copying src/mpi4py/include/mpi4py/mpi4py.h -> build/lib.linux-x86_64-3.8/mpi4py/include/mpi4py
copying src/mpi4py/include/mpi4py/mpi4py.i -> build/lib.linux-x86_64-3.8/mpi4py/include/mpi4py
copying src/mpi4py/include/mpi4py/mpi.pxi -> build/lib.linux-x86_64-3.8/mpi4py/include/mpi4py
running build_clib
MPI configuration: [mpi] from 'mpi.cfg'
checking for library 'lmpe' ...
gcc -pthread -B /home/pkgeval/.julia/conda/3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o
gcc -pthread -B /home/pkgeval/.julia/conda/3/compiler_compat -Wl,--sysroot=/ _configtest.o -llmpe -o _configtest
/home/pkgeval/.julia/conda/3/compiler_compat/ld: cannot find -llmpe
collect2: error: ld returned 1 exit status
failure.
removing: _configtest.c _configtest.o
building 'mpe' dylib library
creating build/temp.linux-x86_64-3.8
creating build/temp.linux-x86_64-3.8/src
creating build/temp.linux-x86_64-3.8/src/lib-pmpi
gcc -pthread -B /home/pkgeval/.julia/conda/3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c src/lib-pmpi/mpe.c -o build/temp.linux-x86_64-3.8/src/lib-pmpi/mpe.o
creating build/lib.linux-x86_64-3.8/mpi4py/lib-pmpi
gcc -pthread -shared -B /home/pkgeval/.julia/conda/3/compiler_compat -L/home/pkgeval/.julia/conda/3/lib -Wl,-rpath=/home/pkgeval/.julia/conda/3/lib -Wl,--no-as-needed -Wl,--sysroot=/ -Wl,--no-as-needed build/temp.linux-x86_64-3.8/src/lib-pmpi/mpe.o -o build/lib.linux-x86_64-3.8/mpi4py/lib-pmpi/libmpe.so
checking for library 'vt-mpi' ...
gcc -pthread -B /home/pkgeval/.julia/conda/3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o
gcc -pthread -B /home/pkgeval/.julia/conda/3/compiler_compat -Wl,--sysroot=/ _configtest.o -lvt-mpi -o _configtest
/home/pkgeval/.julia/conda/3/compiler_compat/ld: cannot find -lvt-mpi
collect2: error: ld returned 1 exit status
failure.
removing: _configtest.c _configtest.o
checking for library 'vt.mpi' ...
gcc -pthread -B /home/pkgeval/.julia/conda/3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o
gcc -pthread -B /home/pkgeval/.julia/conda/3/compiler_compat -Wl,--sysroot=/ _configtest.o -lvt.mpi -o _configtest
/home/pkgeval/.julia/conda/3/compiler_compat/ld: cannot find -lvt.mpi
collect2: error: ld returned 1 exit status
failure.
removing: _configtest.c _configtest.o
building 'vt' dylib library
gcc -pthread -B /home/pkgeval/.julia/conda/3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c src/lib-pmpi/vt.c -o build/temp.linux-x86_64-3.8/src/lib-pmpi/vt.o
gcc -pthread -shared -B /home/pkgeval/.julia/conda/3/compiler_compat -L/home/pkgeval/.julia/conda/3/lib -Wl,-rpath=/home/pkgeval/.julia/conda/3/lib -Wl,--no-as-needed -Wl,--sysroot=/ -Wl,--no-as-needed build/temp.linux-x86_64-3.8/src/lib-pmpi/vt.o -o build/lib.linux-x86_64-3.8/mpi4py/lib-pmpi/libvt.so
checking for library 'vt-mpi' ...
gcc -pthread -B /home/pkgeval/.julia/conda/3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o
gcc -pthread -B /home/pkgeval/.julia/conda/3/compiler_compat -Wl,--sysroot=/ _configtest.o -lvt-mpi -o _configtest
/home/pkgeval/.julia/conda/3/compiler_compat/ld: cannot find -lvt-mpi
collect2: error: ld returned 1 exit status
failure.
removing: _configtest.c _configtest.o
checking for library 'vt.mpi' ...
gcc -pthread -B /home/pkgeval/.julia/conda/3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o
gcc -pthread -B /home/pkgeval/.julia/conda/3/compiler_compat -Wl,--sysroot=/ _configtest.o -lvt.mpi -o _configtest
/home/pkgeval/.julia/conda/3/compiler_compat/ld: cannot find -lvt.mpi
collect2: error: ld returned 1 exit status
failure.
removing: _configtest.c _configtest.o
building 'vt-mpi' dylib library
gcc -pthread -B /home/pkgeval/.julia/conda/3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c src/lib-pmpi/vt-mpi.c -o build/temp.linux-x86_64-3.8/src/lib-pmpi/vt-mpi.o
gcc -pthread -shared -B /home/pkgeval/.julia/conda/3/compiler_compat -L/home/pkgeval/.julia/conda/3/lib -Wl,-rpath=/home/pkgeval/.julia/conda/3/lib -Wl,--no-as-needed -Wl,--sysroot=/ -Wl,--no-as-needed build/temp.linux-x86_64-3.8/src/lib-pmpi/vt-mpi.o -o build/lib.linux-x86_64-3.8/mpi4py/lib-pmpi/libvt-mpi.so
checking for library 'vt-hyb' ...
gcc -pthread -B /home/pkgeval/.julia/conda/3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o
gcc -pthread -B /home/pkgeval/.julia/conda/3/compiler_compat -Wl,--sysroot=/ _configtest.o -lvt-hyb -o _configtest
/home/pkgeval/.julia/conda/3/compiler_compat/ld: cannot find -lvt-hyb
collect2: error: ld returned 1 exit status
failure.
removing: _configtest.c _configtest.o
checking for library 'vt.ompi' ...
gcc -pthread -B /home/pkgeval/.julia/conda/3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o
gcc -pthread -B /home/pkgeval/.julia/conda/3/compiler_compat -Wl,--sysroot=/ _configtest.o -lvt.ompi -o _configtest
/home/pkgeval/.julia/conda/3/compiler_compat/ld: cannot find -lvt.ompi
collect2: error: ld returned 1 exit status
failure.
removing: _configtest.c _configtest.o
building 'vt-hyb' dylib library
gcc -pthread -B /home/pkgeval/.julia/conda/3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c src/lib-pmpi/vt-hyb.c -o build/temp.linux-x86_64-3.8/src/lib-pmpi/vt-hyb.o
gcc -pthread -shared -B /home/pkgeval/.julia/conda/3/compiler_compat -L/home/pkgeval/.julia/conda/3/lib -Wl,-rpath=/home/pkgeval/.julia/conda/3/lib -Wl,--no-as-needed -Wl,--sysroot=/ -Wl,--no-as-needed build/temp.linux-x86_64-3.8/src/lib-pmpi/vt-hyb.o -o build/lib.linux-x86_64-3.8/mpi4py/lib-pmpi/libvt-hyb.so
running build_ext
MPI configuration: [mpi] from 'mpi.cfg'
checking for dlopen() availability ...
checking for header 'dlfcn.h' ...
gcc -pthread -B /home/pkgeval/.julia/conda/3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/home/pkgeval/.julia/conda/3/include/python3.8 -c _configtest.c -o _configtest.o
success!
removing: _configtest.c _configtest.o
success!
checking for library 'dl' ...
gcc -pthread -B /home/pkgeval/.julia/conda/3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/home/pkgeval/.julia/conda/3/include/python3.8 -c _configtest.c -o _configtest.o
gcc -pthread -B /home/pkgeval/.julia/conda/3/compiler_compat -Wl,--sysroot=/ _configtest.o -Lbuild/temp.linux-x86_64-3.8 -ldl -o _configtest
success!
removing: _configtest.c _configtest.o _configtest
checking for function 'dlopen' ...
gcc -pthread -B /home/pkgeval/.julia/conda/3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/home/pkgeval/.julia/conda/3/include/python3.8 -c _configtest.c -o _configtest.o
gcc -pthread -B /home/pkgeval/.julia/conda/3/compiler_compat -Wl,--sysroot=/ _configtest.o -Lbuild/temp.linux-x86_64-3.8 -ldl -o _configtest
success!
removing: _configtest.c _configtest.o _configtest
building 'mpi4py.dl' extension
gcc -pthread -B /home/pkgeval/.julia/conda/3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -DHAVE_DLFCN_H=1 -DHAVE_DLOPEN=1 -I/home/pkgeval/.julia/conda/3/include/python3.8 -c src/dynload.c -o build/temp.linux-x86_64-3.8/src/dynload.o
gcc -pthread -shared -B /home/pkgeval/.julia/conda/3/compiler_compat -L/home/pkgeval/.julia/conda/3/lib -Wl,-rpath=/home/pkgeval/.julia/conda/3/lib -Wl,--no-as-needed -Wl,--sysroot=/ build/temp.linux-x86_64-3.8/src/dynload.o -Lbuild/temp.linux-x86_64-3.8 -ldl -o build/lib.linux-x86_64-3.8/mpi4py/dl.cpython-38-x86_64-linux-gnu.so
checking for MPI compile and link ...
gcc -pthread -B /home/pkgeval/.julia/conda/3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/home/pkgeval/.julia/conda/3/include/python3.8 -c _configtest.c -o _configtest.o
_configtest.c:2:10: fatal error: mpi.h: No such file or directory
#include <mpi.h>
^~~~~~~
compilation terminated.
failure.
removing: _configtest.c _configtest.o
error: Cannot compile MPI programs. Check your configuration!!!
----------------------------------------
ERROR: Command errored out with exit status 1: /home/pkgeval/.julia/conda/3/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-kqcdy0bu/mpi4py/setup.py'"'"'; __file__='"'"'/tmp/pip-install-kqcdy0bu/mpi4py/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-gd9h9a6d/install-record.txt --single-version-externally-managed --compile --install-headers /home/pkgeval/.julia/conda/3/include/python3.8/mpi4py Check the logs for full command output.
[ Info: Running `conda install -q -y pip` in root environment
ERROR: LoadError: failed process: Process(`/home/pkgeval/.julia/conda/3/bin/pip install mpi4py`, ProcessExited(1)) [1]
Stacktrace:
[1] pipeline_error
@ ./process.jl:525 [inlined]
[2] run(::Cmd; wait::Bool)
@ Base ./process.jl:440
[3] run(::Cmd)
@ Base ./process.jl:438
[4] top-level scope
@ ~/.julia/packages/Devito/20atZ/deps/build.jl:6
[5] include(fname::String)
@ Base.MainInclude ./client.jl:444
[6] top-level scope
@ none:5
in expression starting at /home/pkgeval/.julia/packages/Devito/20atZ/deps/build.jl:6
Stacktrace:
[1] pkgerror(msg::String)
@ Pkg.Types /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/Types.jl:52
[2] (::Pkg.Operations.var"#73#78"{Bool, Pkg.Types.Context, String, Pkg.Types.PackageSpec})()
@ Pkg.Operations /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/Operations.jl:979
[3] withenv(f::Pkg.Operations.var"#73#78"{Bool, Pkg.Types.Context, String, Pkg.Types.PackageSpec}, keyvals::Pair{String, String})
@ Base ./env.jl:161
[4] (::Pkg.Operations.var"#100#104"{String, Pkg.Operations.var"#73#78"{Bool, Pkg.Types.Context, String, Pkg.Types.PackageSpec}, Pkg.Types.PackageSpec})()
@ Pkg.Operations /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/Operations.jl:1464
[5] with_temp_env(fn::Pkg.Operations.var"#100#104"{String, Pkg.Operations.var"#73#78"{Bool, Pkg.Types.Context, String, Pkg.Types.PackageSpec}, Pkg.Types.PackageSpec}, temp_env::String)
@ Pkg.Operations /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/Operations.jl:1378
[6] (::Pkg.Operations.var"#99#103"{Pkg.Operations.var"#73#78"{Bool, Pkg.Types.Context, String, Pkg.Types.PackageSpec}, Pkg.Types.Context, Pkg.Types.PackageSpec, String, Pkg.Types.Project, String})(tmp::String)
@ Pkg.Operations /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/Operations.jl:1449
[7] mktempdir(fn::Pkg.Operations.var"#99#103"{Pkg.Operations.var"#73#78"{Bool, Pkg.Types.Context, String, Pkg.Types.PackageSpec}, Pkg.Types.Context, Pkg.Types.PackageSpec, String, Pkg.Types.Project, String}, parent::String; prefix::String)
@ Base.Filesystem ./file.jl:711
[8] mktempdir(fn::Function, parent::String)
@ Base.Filesystem ./file.jl:709
[9] sandbox(fn::Function, ctx::Pkg.Types.Context, target::Pkg.Types.PackageSpec, target_path::String, sandbox_path::String, sandbox_project_override::Pkg.Types.Project)
@ Pkg.Operations /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/Operations.jl:1416
[10] build_versions(ctx::Pkg.Types.Context, uuids::Vector{Base.UUID}; might_need_to_resolve::Bool, verbose::Bool)
@ Pkg.Operations /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/Operations.jl:960
[11] build_versions
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/Operations.jl:899 [inlined]
[12] add(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}, new_git::Vector{Base.UUID}; preserve::Pkg.Types.PreserveLevel, platform::Base.BinaryPlatforms.Platform)
@ Pkg.Operations /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/Operations.jl:1175
[13] add(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; preserve::Pkg.Types.PreserveLevel, platform::Base.BinaryPlatforms.Platform, kwargs::Base.Iterators.Pairs{Union{}, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ Pkg.API /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:192
[14] add
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:143 [inlined]
[15] add(pkgs::Vector{Pkg.Types.PackageSpec}; kwargs::Base.Iterators.Pairs{Union{}, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ Pkg.API /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:68
[16] add
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:68 [inlined]
[17] #add#21
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:66 [inlined]
[18] add
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:66 [inlined]
[19] #add#20
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:65 [inlined]
[20] add(pkg::String)
@ Pkg.API /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:65
[21] top-level scope
@ none:18