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1.6.0-DEV-22b5d93b2b.log
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1.6.0-DEV-22b5d93b2b.log
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Julia Version 1.6.0-DEV.1069
Commit 22b5d93b2b (2020-09-28 17:33 UTC)
Platform Info:
OS: Linux (x86_64-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-10.0.1 (ORCJIT, skylake-avx512)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
Installed Gumbo_jll ────────── v0.10.1+1
Installed IniFile ──────────── v0.5.0
Installed Cascadia ─────────── v1.0.0
Installed DataDepsGenerators ─ v0.5.1
Installed MbedTLS_jll ──────── v2.16.8+0
Installed HTTP ─────────────── v0.8.19
Installed JSON ─────────────── v0.21.1
Installed AbstractTrees ────── v0.3.3
Installed MbedTLS ──────────── v1.0.2
Installed Gumbo ────────────── v0.8.0
Installed Parsers ──────────── v1.0.10
Updating `~/.julia/environments/v1.6/Project.toml`
[a14fa8ac] + DataDepsGenerators v0.5.1
Updating `~/.julia/environments/v1.6/Manifest.toml`
[1520ce14] + AbstractTrees v0.3.3
[54eefc05] + Cascadia v1.0.0
[a14fa8ac] + DataDepsGenerators v0.5.1
[708ec375] + Gumbo v0.8.0
[528830af] + Gumbo_jll v0.10.1+1
[cd3eb016] + HTTP v0.8.19
[83e8ac13] + IniFile v0.5.0
[682c06a0] + JSON v0.21.1
[739be429] + MbedTLS v1.0.2
[c8ffd9c3] + MbedTLS_jll v2.16.8+0
[69de0a69] + Parsers v1.0.10
[56f22d72] + Artifacts
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8ba89e20] + Distributed
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[6462fe0b] + Sockets
[fa267f1f] + TOML
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Testing DataDepsGenerators
Status `/tmp/jl_Oiy5vG/Project.toml`
[1520ce14] AbstractTrees v0.3.3
[54eefc05] Cascadia v1.0.0
[124859b0] DataDeps v0.7.2
[a14fa8ac] DataDepsGenerators v0.5.1
[708ec375] Gumbo v0.8.0
[cd3eb016] HTTP v0.8.19
[682c06a0] JSON v0.21.1
[6ac74813] MD5 v0.2.1
[324d217c] ReferenceTests v0.9.1
[ade2ca70] Dates
[b77e0a4c] InteractiveUtils
[8dfed614] Test
Status `/tmp/jl_Oiy5vG/Manifest.toml`
[1520ce14] AbstractTrees v0.3.3
[13072b0f] AxisAlgorithms v1.0.0
[54eefc05] Cascadia v1.0.0
[3da002f7] ColorTypes v0.10.9
[c3611d14] ColorVectorSpace v0.8.6
[5ae59095] Colors v0.12.4
[34da2185] Compat v3.17.0
[e66e0078] CompilerSupportLibraries_jll v0.3.3+0
[150eb455] CoordinateTransformations v0.6.0
[a8cc5b0e] Crayons v4.0.4
[9a962f9c] DataAPI v1.3.0
[124859b0] DataDeps v0.7.2
[a14fa8ac] DataDepsGenerators v0.5.1
[864edb3b] DataStructures v0.18.6
[ab62b9b5] DeepDiffs v1.2.0
[b4f34e82] Distances v0.9.0
[5789e2e9] FileIO v1.4.3
[53c48c17] FixedPointNumbers v0.8.4
[a2bd30eb] Graphics v1.0.2
[708ec375] Gumbo v0.8.0
[528830af] Gumbo_jll v0.10.1+1
[cd3eb016] HTTP v0.8.19
[bbac6d45] IdentityRanges v0.3.1
[a09fc81d] ImageCore v0.8.16
[d8c32880] ImageInTerminal v0.4.5
[02fcd773] ImageTransformations v0.8.6
[83e8ac13] IniFile v0.5.0
[a98d9a8b] Interpolations v0.12.10
[682c06a0] JSON v0.21.1
[6ac74813] MD5 v0.2.1
[dbb5928d] MappedArrays v0.2.2
[739be429] MbedTLS v1.0.2
[c8ffd9c3] MbedTLS_jll v2.16.8+0
[e1d29d7a] Missings v0.4.4
[e94cdb99] MosaicViews v0.2.3
[77ba4419] NaNMath v0.3.4
[6fe1bfb0] OffsetArrays v1.3.0
[efe28fd5] OpenSpecFun_jll v0.5.3+3
[bac558e1] OrderedCollections v1.3.1
[5432bcbf] PaddedViews v0.5.5
[69de0a69] Parsers v1.0.10
[c84ed2f1] Ratios v0.4.0
[189a3867] Reexport v0.2.0
[324d217c] ReferenceTests v0.9.1
[ae029012] Requires v1.0.3
[6038ab10] Rotations v1.0.1
[a2af1166] SortingAlgorithms v0.3.1
[276daf66] SpecialFunctions v0.10.3
[90137ffa] StaticArrays v0.12.4
[2913bbd2] StatsBase v0.33.1
[efce3f68] WoodburyMatrices v0.5.2
[56f22d72] Artifacts
[2a0f44e3] Base64
[ade2ca70] Dates
[8bb1440f] DelimitedFiles
[8ba89e20] Distributed
[b77e0a4c] InteractiveUtils
[76f85450] LibGit2
[8f399da3] Libdl
[37e2e46d] LinearAlgebra
[56ddb016] Logging
[d6f4376e] Markdown
[a63ad114] Mmap
[44cfe95a] Pkg
[de0858da] Printf
[3fa0cd96] REPL
[9a3f8284] Random
[ea8e919c] SHA
[9e88b42a] Serialization
[1a1011a3] SharedArrays
[6462fe0b] Sockets
[2f01184e] SparseArrays
[10745b16] Statistics
[fa267f1f] TOML
[8dfed614] Test
[cf7118a7] UUIDs
[4ec0a83e] Unicode
Testing Running tests...
UCI Air Quality: Error During Test at /home/pkgeval/.julia/packages/DataDepsGenerators/6JYi6/test/UCI.jl:6
Got exception outside of a @test
BoundsError: attempt to access 0-element Vector{Gumbo.HTMLNode} at index [1]
Stacktrace:
[1] getindex
@ ./array.jl:809 [inlined]
[2] get_dataurls_from_webserver_index(datapage_url::String)
@ DataDepsGenerators ~/.julia/packages/DataDepsGenerators/6JYi6/src/misc_extractors.jl:12
[3] get_urls(#unused#::UCI, mainpage::Gumbo.HTMLDocument)
@ DataDepsGenerators ~/.julia/packages/DataDepsGenerators/6JYi6/src/APIs/UCI.jl:34
[4] find_metadata(repo::UCI, dataname::String, shortname::Nothing)
@ DataDepsGenerators ~/.julia/packages/DataDepsGenerators/6JYi6/src/generate.jl:75
[5] #generate#7
@ ~/.julia/packages/DataDepsGenerators/6JYi6/src/generate.jl:25 [inlined]
[6] generate
@ ~/.julia/packages/DataDepsGenerators/6JYi6/src/generate.jl:25 [inlined]
[7] top-level scope
@ ~/.julia/packages/DataDepsGenerators/6JYi6/test/UCI.jl:7
[8] top-level scope
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Test/src/Test.jl:1113
[9] top-level scope
@ ~/.julia/packages/DataDepsGenerators/6JYi6/test/UCI.jl:7
[10] include(fname::String)
@ Base.MainInclude ./client.jl:444
[11] macro expansion
@ ~/.julia/packages/DataDepsGenerators/6JYi6/test/runtests.jl:21 [inlined]
[12] macro expansion
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Test/src/Test.jl:1113 [inlined]
[13] macro expansion
@ ~/.julia/packages/DataDepsGenerators/6JYi6/test/runtests.jl:21 [inlined]
[14] macro expansion
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Test/src/Test.jl:1113 [inlined]
[15] top-level scope
@ ~/.julia/packages/DataDepsGenerators/6JYi6/test/runtests.jl:19
[16] include(fname::String)
@ Base.MainInclude ./client.jl:444
[17] top-level scope
@ none:6
[18] eval(m::Module, e::Any)
@ Core ./boot.jl:360
[19] exec_options(opts::Base.JLOptions)
@ Base ./client.jl:261
[20] _start()
@ Base ./client.jl:485
UCI: Error During Test at /home/pkgeval/.julia/packages/DataDepsGenerators/6JYi6/test/runtests.jl:20
Got exception outside of a @test
LoadError: BoundsError: attempt to access 0-element Vector{Gumbo.HTMLNode} at index [1]
Stacktrace:
[1] getindex
@ ./array.jl:809 [inlined]
[2] get_dataurls_from_webserver_index(datapage_url::String)
@ DataDepsGenerators ~/.julia/packages/DataDepsGenerators/6JYi6/src/misc_extractors.jl:12
[3] get_urls(#unused#::UCI, mainpage::Gumbo.HTMLDocument)
@ DataDepsGenerators ~/.julia/packages/DataDepsGenerators/6JYi6/src/APIs/UCI.jl:34
[4] find_metadata(repo::UCI, dataname::String, shortname::Nothing)
@ DataDepsGenerators ~/.julia/packages/DataDepsGenerators/6JYi6/src/generate.jl:75
[5] #generate#7
@ ~/.julia/packages/DataDepsGenerators/6JYi6/src/generate.jl:25 [inlined]
[6] generate
@ ~/.julia/packages/DataDepsGenerators/6JYi6/src/generate.jl:25 [inlined]
[7] top-level scope
@ ~/.julia/packages/DataDepsGenerators/6JYi6/test/UCI.jl:17
[8] include(fname::String)
@ Base.MainInclude ./client.jl:444
[9] macro expansion
@ ~/.julia/packages/DataDepsGenerators/6JYi6/test/runtests.jl:21 [inlined]
[10] macro expansion
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Test/src/Test.jl:1113 [inlined]
[11] macro expansion
@ ~/.julia/packages/DataDepsGenerators/6JYi6/test/runtests.jl:21 [inlined]
[12] macro expansion
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Test/src/Test.jl:1113 [inlined]
[13] top-level scope
@ ~/.julia/packages/DataDepsGenerators/6JYi6/test/runtests.jl:19
[14] include(fname::String)
@ Base.MainInclude ./client.jl:444
[15] top-level scope
@ none:6
[16] eval(m::Module, e::Any)
@ Core ./boot.jl:360
[17] exec_options(opts::Base.JLOptions)
@ Base ./client.jl:261
[18] _start()
@ Base ./client.jl:485
in expression starting at /home/pkgeval/.julia/packages/DataDepsGenerators/6JYi6/test/UCI.jl:17
Integration Test: Error During Test at /home/pkgeval/.julia/packages/DataDepsGenerators/6JYi6/test/GitHub.jl:20
Test threw exception
Expression: length(collect(readdir(datadep"March Madness Predictions"))) > 0
DataDeps.DisabledError("DataDeps download disabled, as we appear to be in a CI environment, and the environment variable `DATADEPS_ALWAYS_ACCEPT` is not set.\nIf this is indeed running in a headless CI environment, then set the `DATADEPS_ALWAYS_ACCEPT` environment variable to `true` to bypass the accept download prompt (if you do wish to always accept.)\nIf not, then either unset the `CI` environment variable from true, or set `DATADEPS_ALWAYS_ACCEPT` to `false` for the normal prompt behaviour.")
Stacktrace:
[1] ensure_download_permitted()
@ DataDeps ~/.julia/packages/DataDeps/gbyoa/src/resolution_automatic.jl:26
[2] download(datadep::DataDep{Nothing, Vector{Any}, typeof(DataDeps.fetch_default), typeof(identity)}, localdir::String; remotepath::Vector{Any}, i_accept_the_terms_of_use::Nothing, skip_checksum::Bool)
@ DataDeps ~/.julia/packages/DataDeps/gbyoa/src/resolution_automatic.jl:70
[3] download
@ ~/.julia/packages/DataDeps/gbyoa/src/resolution_automatic.jl:70 [inlined]
[4] handle_missing
@ ~/.julia/packages/DataDeps/gbyoa/src/resolution_automatic.jl:10 [inlined]
[5] _resolve(datadep::DataDep{Nothing, Vector{Any}, typeof(DataDeps.fetch_default), typeof(identity)}, calling_filepath::String)
@ DataDeps ~/.julia/packages/DataDeps/gbyoa/src/resolution.jl:83
[6] resolve(datadep::DataDep{Nothing, Vector{Any}, typeof(DataDeps.fetch_default), typeof(identity)}, inner_filepath::String, calling_filepath::String)
@ DataDeps ~/.julia/packages/DataDeps/gbyoa/src/resolution.jl:29
[7] resolve(datadep_name::String, inner_filepath::String, calling_filepath::String)
@ DataDeps ~/.julia/packages/DataDeps/gbyoa/src/resolution.jl:54
[8] resolve(namepath::String, calling_filepath::String)
@ DataDeps ~/.julia/packages/DataDeps/gbyoa/src/resolution.jl:73
[9] top-level scope
@ ~/.julia/packages/DataDepsGenerators/6JYi6/test/GitHub.jl:20
[10] top-level scope
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Test/src/Test.jl:1113
[11] top-level scope
@ ~/.julia/packages/DataDepsGenerators/6JYi6/test/GitHub.jl:19
[12] top-level scope
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Test/src/Test.jl:1113
[13] top-level scope
@ ~/.julia/packages/DataDepsGenerators/6JYi6/test/GitHub.jl:16
[14] top-level scope
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Test/src/Test.jl:1113
[15] top-level scope
@ ~/.julia/packages/DataDepsGenerators/6JYi6/test/GitHub.jl:15
Test for "538 march.txt" failed.
- DIFF ------------------------
"""
register(DataDep(
\"March Madness Predictions\",
\"\"\"
\tDataset: March Madness Predictions
\tWebsite: <URL>
\tAuthor: Authors not specified
- \t# March Madness Predictions
- \t
- \tThis folder contains data behind the [2015 March Madness Predictions](<URL>).
- \t
- \tData was updated each time we calculate new odds.
- \t
+ \tLicense: Unknown
\t
- \tLICENSE
- \t--------
- \tAttribution 4.0 International
\t
- \t=======================================================================
- \t...
- \t(Read more at <URL>)
\t\"\"\",
- \tAny[Any[\"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\"], Any[\"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\"], \"<URL>\"],
+ \tAny[],
))"""
-------------------------------
538 March: Error During Test at /home/pkgeval/.julia/packages/DataDepsGenerators/6JYi6/test/GitHub.jl:15
Got exception outside of a @test
You need to run the tests interactively with 'include("test/runtests.jl")' to update reference images
Stacktrace:
[1] error(s::String)
@ Base ./error.jl:33
[2] test_reference(file::FileIO.File{FileIO.DataFormat{:TXT}}, raw_actual::String, equiv::Nothing, rendermode::Nothing; kw::Base.Iterators.Pairs{Union{}, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ ReferenceTests ~/.julia/packages/ReferenceTests/JDrHL/src/test_reference.jl:140
[3] test_reference(file::FileIO.File{FileIO.DataFormat{:TXT}}, raw_actual::String, equiv::Nothing, rendermode::Nothing)
@ ReferenceTests ~/.julia/packages/ReferenceTests/JDrHL/src/test_reference.jl:100
[4] test_reference(filename::String, raw_actual::String; by::Nothing, render::Nothing, kw::Base.Iterators.Pairs{Union{}, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ ReferenceTests ~/.julia/packages/ReferenceTests/JDrHL/src/test_reference.jl:90
[5] test_reference(filename::String, raw_actual::String)
@ ReferenceTests ~/.julia/packages/ReferenceTests/JDrHL/src/test_reference.jl:90
[6] top-level scope
@ ~/.julia/packages/DataDepsGenerators/6JYi6/test/GitHub.jl:23
[7] top-level scope
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Test/src/Test.jl:1113
[8] top-level scope
@ ~/.julia/packages/DataDepsGenerators/6JYi6/test/GitHub.jl:16
[9] top-level scope
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Test/src/Test.jl:1113
[10] top-level scope
@ ~/.julia/packages/DataDepsGenerators/6JYi6/test/GitHub.jl:15
[11] include(fname::String)
@ Base.MainInclude ./client.jl:444
[12] macro expansion
@ ~/.julia/packages/DataDepsGenerators/6JYi6/test/runtests.jl:21 [inlined]
[13] macro expansion
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Test/src/Test.jl:1113 [inlined]
[14] macro expansion
@ ~/.julia/packages/DataDepsGenerators/6JYi6/test/runtests.jl:21 [inlined]
[15] macro expansion
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Test/src/Test.jl:1113 [inlined]
[16] top-level scope
@ ~/.julia/packages/DataDepsGenerators/6JYi6/test/runtests.jl:19
[17] include(fname::String)
@ Base.MainInclude ./client.jl:444
[18] top-level scope
@ none:6
[19] eval(m::Module, e::Any)
@ Core ./boot.jl:360
[20] exec_options(opts::Base.JLOptions)
@ Base ./client.jl:261
[21] _start()
@ Base ./client.jl:485
Test for "538 steak.txt" failed.
- DIFF ------------------------
"""
register(DataDep(
\"Steak Survey\",
\"\"\"
\tDataset: Steak Survey
\tWebsite: <URL>
\tAuthor: Authors not specified
- \t# Steak Survey
- \t
- \tThis folder contains data behind the stories:
- \t* [How Americans Like Their Steak](<URL>).
- \t* [How Americans Order Their Steak](<URL>)
- \t
- \t
+ \tLicense: Unknown
\t
- \tLICENSE
- \t--------
- \tAttribution 4.0 International
\t
- \t=======================================================================
- \t...
- \t(Read more at <URL>)
\t\"\"\",
- \tAny[\"<URL>\", \"<URL>\"],
+ \tAny[],
))"""
-------------------------------
fivethirtyeight (folders in 1 repo): Error During Test at /home/pkgeval/.julia/packages/DataDepsGenerators/6JYi6/test/GitHub.jl:14
Got exception outside of a @test
You need to run the tests interactively with 'include("test/runtests.jl")' to update reference images
Stacktrace:
[1] error(s::String)
@ Base ./error.jl:33
[2] test_reference(file::FileIO.File{FileIO.DataFormat{:TXT}}, raw_actual::String, equiv::Nothing, rendermode::Nothing; kw::Base.Iterators.Pairs{Union{}, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ ReferenceTests ~/.julia/packages/ReferenceTests/JDrHL/src/test_reference.jl:140
[3] test_reference(file::FileIO.File{FileIO.DataFormat{:TXT}}, raw_actual::String, equiv::Nothing, rendermode::Nothing)
@ ReferenceTests ~/.julia/packages/ReferenceTests/JDrHL/src/test_reference.jl:100
[4] test_reference(filename::String, raw_actual::String; by::Nothing, render::Nothing, kw::Base.Iterators.Pairs{Union{}, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ ReferenceTests ~/.julia/packages/ReferenceTests/JDrHL/src/test_reference.jl:90
[5] test_reference(filename::String, raw_actual::String)
@ ReferenceTests ~/.julia/packages/ReferenceTests/JDrHL/src/test_reference.jl:90
[6] top-level scope
@ ~/.julia/packages/DataDepsGenerators/6JYi6/test/GitHub.jl:26
[7] top-level scope
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Test/src/Test.jl:1113
[8] top-level scope
@ ~/.julia/packages/DataDepsGenerators/6JYi6/test/GitHub.jl:15
[9] include(fname::String)
@ Base.MainInclude ./client.jl:444
[10] macro expansion
@ ~/.julia/packages/DataDepsGenerators/6JYi6/test/runtests.jl:21 [inlined]
[11] macro expansion
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Test/src/Test.jl:1113 [inlined]
[12] macro expansion
@ ~/.julia/packages/DataDepsGenerators/6JYi6/test/runtests.jl:21 [inlined]
[13] macro expansion
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Test/src/Test.jl:1113 [inlined]
[14] top-level scope
@ ~/.julia/packages/DataDepsGenerators/6JYi6/test/runtests.jl:19
[15] include(fname::String)
@ Base.MainInclude ./client.jl:444
[16] top-level scope
@ none:6
[17] eval(m::Module, e::Any)
@ Core ./boot.jl:360
[18] exec_options(opts::Base.JLOptions)
@ Base ./client.jl:261
[19] _start()
@ Base ./client.jl:485
Integration Test: Error During Test at /home/pkgeval/.julia/packages/DataDepsGenerators/6JYi6/test/GitHub.jl:41
Test threw exception
Expression: length(collect(readdir(datadep"Presidential Campaign Contributions"))) > 0
DataDeps.DisabledError("DataDeps download disabled, as we appear to be in a CI environment, and the environment variable `DATADEPS_ALWAYS_ACCEPT` is not set.\nIf this is indeed running in a headless CI environment, then set the `DATADEPS_ALWAYS_ACCEPT` environment variable to `true` to bypass the accept download prompt (if you do wish to always accept.)\nIf not, then either unset the `CI` environment variable from true, or set `DATADEPS_ALWAYS_ACCEPT` to `false` for the normal prompt behaviour.")
Stacktrace:
[1] ensure_download_permitted()
@ DataDeps ~/.julia/packages/DataDeps/gbyoa/src/resolution_automatic.jl:26
[2] download(datadep::DataDep{Nothing, Vector{Any}, typeof(DataDeps.fetch_default), typeof(identity)}, localdir::String; remotepath::Vector{Any}, i_accept_the_terms_of_use::Nothing, skip_checksum::Bool)
@ DataDeps ~/.julia/packages/DataDeps/gbyoa/src/resolution_automatic.jl:70
[3] download
@ ~/.julia/packages/DataDeps/gbyoa/src/resolution_automatic.jl:70 [inlined]
[4] handle_missing
@ ~/.julia/packages/DataDeps/gbyoa/src/resolution_automatic.jl:10 [inlined]
[5] _resolve(datadep::DataDep{Nothing, Vector{Any}, typeof(DataDeps.fetch_default), typeof(identity)}, calling_filepath::String)
@ DataDeps ~/.julia/packages/DataDeps/gbyoa/src/resolution.jl:83
[6] resolve(datadep::DataDep{Nothing, Vector{Any}, typeof(DataDeps.fetch_default), typeof(identity)}, inner_filepath::String, calling_filepath::String)
@ DataDeps ~/.julia/packages/DataDeps/gbyoa/src/resolution.jl:29
[7] resolve(datadep_name::String, inner_filepath::String, calling_filepath::String)
@ DataDeps ~/.julia/packages/DataDeps/gbyoa/src/resolution.jl:54
[8] resolve(namepath::String, calling_filepath::String)
@ DataDeps ~/.julia/packages/DataDeps/gbyoa/src/resolution.jl:73
[9] top-level scope
@ ~/.julia/packages/DataDepsGenerators/6JYi6/test/GitHub.jl:41
[10] top-level scope
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Test/src/Test.jl:1113
[11] top-level scope
@ ~/.julia/packages/DataDepsGenerators/6JYi6/test/GitHub.jl:40
[12] top-level scope
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Test/src/Test.jl:1113
[13] top-level scope
@ ~/.julia/packages/DataDepsGenerators/6JYi6/test/GitHub.jl:37
[14] top-level scope
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Test/src/Test.jl:1113
[15] top-level scope
@ ~/.julia/packages/DataDepsGenerators/6JYi6/test/GitHub.jl:36
Test for "buzzfeed pres-camp.txt" failed.
- DIFF ------------------------
"""
register(DataDep(
\"Presidential Campaign Contributions\",
\"\"\"
\tDataset: Presidential Campaign Contributions
\tWebsite: <URL>
\tAuthor: Authors not specified
\tLicense: Unknown
- \t
- \t# Presidential Campaign Contributions
- \t
- \t*Last updated: October 28, 2016*
- \t
- \t## What
\t
- \tFor each recent U.S. presidential candidate's principal campaign committee, this repository contains the following data:
\t
- \t- All __itemized contributions__ (Form 3P, Schedule A, Line 17a)
- \t- All __transfers from other authorized committees__ (Form 3P, Schedule A, Line 18), including the alloted portions of individual contributions to joint-fundraising committees.
- \t- All __refunds to individuals__ (Form 3P, Schedule B, Line 28a)
- \t...
- \t(Read more at <URL>)
\t\"\"\",
- \tAny[Any[Any[Any[\"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\"], Any[\"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\"]], Any[Any[\"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\"], Any[\"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\"], Any[\"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\"], Any[\"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\"]], Any[Any[\"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\"], Any[\"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\"], Any[\"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\"], Any[\"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\"], Any[\"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\"]]], Any[Any[\"<URL>\", \"<URL>\"], Any[\"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\"], Any[\"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\"]], Any[\"<URL>\", \"<URL>\", \"<URL>\"], \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\"],
+ \tAny[],
))"""
-------------------------------
Pres Camp: Error During Test at /home/pkgeval/.julia/packages/DataDepsGenerators/6JYi6/test/GitHub.jl:36
Got exception outside of a @test
You need to run the tests interactively with 'include("test/runtests.jl")' to update reference images
Stacktrace:
[1] error(s::String)
@ Base ./error.jl:33
[2] test_reference(file::FileIO.File{FileIO.DataFormat{:TXT}}, raw_actual::String, equiv::Nothing, rendermode::Nothing; kw::Base.Iterators.Pairs{Union{}, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ ReferenceTests ~/.julia/packages/ReferenceTests/JDrHL/src/test_reference.jl:140
[3] test_reference(file::FileIO.File{FileIO.DataFormat{:TXT}}, raw_actual::String, equiv::Nothing, rendermode::Nothing)
@ ReferenceTests ~/.julia/packages/ReferenceTests/JDrHL/src/test_reference.jl:100
[4] test_reference(filename::String, raw_actual::String; by::Nothing, render::Nothing, kw::Base.Iterators.Pairs{Union{}, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ ReferenceTests ~/.julia/packages/ReferenceTests/JDrHL/src/test_reference.jl:90
[5] test_reference(filename::String, raw_actual::String)
@ ReferenceTests ~/.julia/packages/ReferenceTests/JDrHL/src/test_reference.jl:90
[6] top-level scope
@ ~/.julia/packages/DataDepsGenerators/6JYi6/test/GitHub.jl:44
[7] top-level scope
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Test/src/Test.jl:1113
[8] top-level scope
@ ~/.julia/packages/DataDepsGenerators/6JYi6/test/GitHub.jl:37
[9] top-level scope
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Test/src/Test.jl:1113
[10] top-level scope
@ ~/.julia/packages/DataDepsGenerators/6JYi6/test/GitHub.jl:36
[11] include(fname::String)
@ Base.MainInclude ./client.jl:444
[12] macro expansion
@ ~/.julia/packages/DataDepsGenerators/6JYi6/test/runtests.jl:21 [inlined]
[13] macro expansion
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Test/src/Test.jl:1113 [inlined]
[14] macro expansion
@ ~/.julia/packages/DataDepsGenerators/6JYi6/test/runtests.jl:21 [inlined]
[15] macro expansion
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Test/src/Test.jl:1113 [inlined]
[16] top-level scope
@ ~/.julia/packages/DataDepsGenerators/6JYi6/test/runtests.jl:19
[17] include(fname::String)
@ Base.MainInclude ./client.jl:444
[18] top-level scope
@ none:6
[19] eval(m::Module, e::Any)
@ Core ./boot.jl:360
[20] exec_options(opts::Base.JLOptions)
@ Base ./client.jl:261
[21] _start()
@ Base ./client.jl:485
Test for "buzzfeed primates.txt" failed.
- DIFF ------------------------
"""
register(DataDep(
\"Primates in biodefense research Data and analysis\",
\"\"\"
\tDataset: Primates in biodefense research: Data and analysis
\tWebsite: <URL>
\tAuthor: Authors not specified
\tLicense: Unknown
- \t
- \t# Primates in biodefense research: Data and analysis
- \t
- \tThis repository contains data and script to repeat the reported analysis. It contains the following:
- \t
- \t- `facility.txt` `report.txt` Raw data files downloaded from the USDA's [Animal Care Information System](<URL>) database on May 13, 2015.
- \t- `facility.json` `report.json` Files to process/clean the data above using [Open Refine](<URL>). Load each `.txt` file as a new project, select the `Undo/Redo` tab, click the `Apply` button and then paste the content of the corresponding `.json` file into the `Apply Operation History` box. Click `Perform Operations` and the data will be processed to edit field headings, and ensure that entries for primates are labelled consistently as `NONHUMAN PRIMATES` in the field `col_a`. Then export the data from each project as a tab-separated text file.
- \t- `facility.tsv` `report.tsv` Processed/cleaned versions of the data, exported from Open Refine.
- \t- `primates.r` [R](<URL>) script to repeat the analysis reported in the article, using the processed/cleaned data. The script will generate a static version of the published interactive chart.
- \t
\t
\t
- \t...
- \t(Read more at <URL>)
\t\"\"\",
- \tAny[\"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\", \"<URL>\"],
+ \tAny[],
))"""
-------------------------------
BuzzFeedNews (whole repos): Error During Test at /home/pkgeval/.julia/packages/DataDepsGenerators/6JYi6/test/GitHub.jl:35
Got exception outside of a @test
You need to run the tests interactively with 'include("test/runtests.jl")' to update reference images
Stacktrace:
[1] error(s::String)
@ Base ./error.jl:33
[2] test_reference(file::FileIO.File{FileIO.DataFormat{:TXT}}, raw_actual::String, equiv::Nothing, rendermode::Nothing; kw::Base.Iterators.Pairs{Union{}, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ ReferenceTests ~/.julia/packages/ReferenceTests/JDrHL/src/test_reference.jl:140
[3] test_reference(file::FileIO.File{FileIO.DataFormat{:TXT}}, raw_actual::String, equiv::Nothing, rendermode::Nothing)
@ ReferenceTests ~/.julia/packages/ReferenceTests/JDrHL/src/test_reference.jl:100
[4] test_reference(filename::String, raw_actual::String; by::Nothing, render::Nothing, kw::Base.Iterators.Pairs{Union{}, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ ReferenceTests ~/.julia/packages/ReferenceTests/JDrHL/src/test_reference.jl:90
[5] test_reference(filename::String, raw_actual::String)
@ ReferenceTests ~/.julia/packages/ReferenceTests/JDrHL/src/test_reference.jl:90
[6] top-level scope
@ ~/.julia/packages/DataDepsGenerators/6JYi6/test/GitHub.jl:47
[7] top-level scope
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Test/src/Test.jl:1113
[8] top-level scope
@ ~/.julia/packages/DataDepsGenerators/6JYi6/test/GitHub.jl:36
[9] include(fname::String)
@ Base.MainInclude ./client.jl:444
[10] macro expansion
@ ~/.julia/packages/DataDepsGenerators/6JYi6/test/runtests.jl:21 [inlined]
[11] macro expansion
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Test/src/Test.jl:1113 [inlined]
[12] macro expansion
@ ~/.julia/packages/DataDepsGenerators/6JYi6/test/runtests.jl:21 [inlined]
[13] macro expansion
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Test/src/Test.jl:1113 [inlined]
[14] top-level scope
@ ~/.julia/packages/DataDepsGenerators/6JYi6/test/runtests.jl:19
[15] include(fname::String)
@ Base.MainInclude ./client.jl:444
[16] top-level scope
@ none:6
[17] eval(m::Module, e::Any)
@ Core ./boot.jl:360
[18] exec_options(opts::Base.JLOptions)
@ Base ./client.jl:261
[19] _start()
@ Base ./client.jl:485
DataDryad test: Error During Test at /home/pkgeval/.julia/packages/DataDepsGenerators/6JYi6/test/DataDryad.jl:6
Got exception outside of a @test
BoundsError: attempt to access 0-element Vector{Gumbo.HTMLNode} at index [1]
Stacktrace:
[1] getindex
@ ./array.jl:809 [inlined]
[2] first
@ ./abstractarray.jl:324 [inlined]
[3] data_fullname(#unused#::DataDryad, mainpage::Gumbo.HTMLDocument)
@ DataDepsGenerators ~/.julia/packages/DataDepsGenerators/6JYi6/src/APIs/DataDryad.jl:63
[4] find_metadata(repo::DataDryad, dataname::String, shortname::Nothing)
@ DataDepsGenerators ~/.julia/packages/DataDepsGenerators/6JYi6/src/generate.jl:73
[5] #generate#7
@ ~/.julia/packages/DataDepsGenerators/6JYi6/src/generate.jl:25 [inlined]
[6] generate
@ ~/.julia/packages/DataDepsGenerators/6JYi6/src/generate.jl:25 [inlined]
[7] top-level scope
@ ~/.julia/packages/DataDepsGenerators/6JYi6/test/DataDryad.jl:8
[8] top-level scope
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Test/src/Test.jl:1113
[9] top-level scope
@ ~/.julia/packages/DataDepsGenerators/6JYi6/test/DataDryad.jl:8
[10] include(fname::String)
@ Base.MainInclude ./client.jl:444
[11] macro expansion
@ ~/.julia/packages/DataDepsGenerators/6JYi6/test/runtests.jl:21 [inlined]
[12] macro expansion
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Test/src/Test.jl:1113 [inlined]
[13] macro expansion
@ ~/.julia/packages/DataDepsGenerators/6JYi6/test/runtests.jl:21 [inlined]
[14] macro expansion
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Test/src/Test.jl:1113 [inlined]
[15] top-level scope
@ ~/.julia/packages/DataDepsGenerators/6JYi6/test/runtests.jl:19
[16] include(fname::String)
@ Base.MainInclude ./client.jl:444
[17] top-level scope
@ none:6
[18] eval(m::Module, e::Any)
@ Core ./boot.jl:360
[19] exec_options(opts::Base.JLOptions)
@ Base ./client.jl:261
[20] _start()
@ Base ./client.jl:485
TERN test: Error During Test at /home/pkgeval/.julia/packages/DataDepsGenerators/6JYi6/test/DataOneV2/TERN.jl:6
Got exception outside of a @test
IOError(MbedTLS error code -9984: X509 - Certificate verification failed, e.g. CRL, CA or signature check failed during request(https://dataone.tern.org.au/mn/v2/object/aekos.org.au/collection/nsw.gov.au/nsw_atlas/vis_flora_module/KAHDRAIN.20150515))
Stacktrace:
[1] handshake(ctx::MbedTLS.SSLContext)
@ MbedTLS ~/.julia/packages/MbedTLS/VbsaQ/src/ssl.jl:83
[2] handshake!
@ ~/.julia/packages/MbedTLS/VbsaQ/src/MbedTLS.jl:134 [inlined]
[3] sslconnection(tcp::Sockets.TCPSocket, host::SubString{String}; require_ssl_verification::Bool, sslconfig::MbedTLS.SSLConfig, kw::Base.Iterators.Pairs{Symbol, Union{Nothing, Bool}, Tuple{Symbol, Symbol}, NamedTuple{(:iofunction, :reached_redirect_limit), Tuple{Nothing, Bool}}})
@ HTTP.ConnectionPool ~/.julia/packages/HTTP/IAI92/src/ConnectionPool.jl:699
[4] #getconnection#29
@ ~/.julia/packages/HTTP/IAI92/src/ConnectionPool.jl:683 [inlined]
[5] newconnection(pod::HTTP.ConnectionPool.Pod, T::Type, host::SubString{String}, port::SubString{String}, pipeline_limit::Int64, require_ssl_verification::Bool, idle_timeout::Int64; kw::Base.Iterators.Pairs{Symbol, Union{Nothing, Bool}, Tuple{Symbol, Symbol}, NamedTuple{(:iofunction, :reached_redirect_limit), Tuple{Nothing, Bool}}})
@ HTTP.ConnectionPool ~/.julia/packages/HTTP/IAI92/src/ConnectionPool.jl:597
[6] getconnection(::Type{HTTP.ConnectionPool.Transaction{MbedTLS.SSLContext}}, host::SubString{String}, port::SubString{String}; connection_limit::Int64, pipeline_limit::Int64, idle_timeout::Int64, reuse_limit::Int64, require_ssl_verification::Bool, kw::Base.Iterators.Pairs{Symbol, Union{Nothing, Bool}, Tuple{Symbol, Symbol}, NamedTuple{(:iofunction, :reached_redirect_limit), Tuple{Nothing, Bool}}})
@ HTTP.ConnectionPool ~/.julia/packages/HTTP/IAI92/src/ConnectionPool.jl:541
[7] request(::Type{HTTP.ConnectionRequest.ConnectionPoolLayer{HTTP.StreamRequest.StreamLayer{Union{}}}}, url::HTTP.URIs.URI, req::HTTP.Messages.Request, body::Vector{UInt8}; proxy::Nothing, socket_type::Type, reuse_limit::Int64, kw::Base.Iterators.Pairs{Symbol, Union{Nothing, Bool}, Tuple{Symbol, Symbol}, NamedTuple{(:iofunction, :reached_redirect_limit), Tuple{Nothing, Bool}}})
@ HTTP.ConnectionRequest ~/.julia/packages/HTTP/IAI92/src/ConnectionRequest.jl:73
[8] request(::Type{HTTP.ExceptionRequest.ExceptionLayer{HTTP.ConnectionRequest.ConnectionPoolLayer{HTTP.StreamRequest.StreamLayer{Union{}}}}}, ::HTTP.URIs.URI, ::Vararg{Any, N} where N; kw::Base.Iterators.Pairs{Symbol, Union{Nothing, Bool}, Tuple{Symbol, Symbol}, NamedTuple{(:iofunction, :reached_redirect_limit), Tuple{Nothing, Bool}}})
@ HTTP.ExceptionRequest ~/.julia/packages/HTTP/IAI92/src/ExceptionRequest.jl:19
[9] (::Base.var"#67#69"{Base.var"#67#68#70"{ExponentialBackOff, HTTP.RetryRequest.var"#2#3"{Bool, HTTP.Messages.Request}, typeof(HTTP.request)}})(::Type, ::Vararg{Any, N} where N; kwargs::Base.Iterators.Pairs{Symbol, Union{Nothing, Bool}, Tuple{Symbol, Symbol}, NamedTuple{(:iofunction, :reached_redirect_limit), Tuple{Nothing, Bool}}})
@ Base ./error.jl:301
[10] #request#1
@ ~/.julia/packages/HTTP/IAI92/src/RetryRequest.jl:44 [inlined]
[11] request(::Type{HTTP.MessageRequest.MessageLayer{HTTP.RetryRequest.RetryLayer{HTTP.ExceptionRequest.ExceptionLayer{HTTP.ConnectionRequest.ConnectionPoolLayer{HTTP.StreamRequest.StreamLayer{Union{}}}}}}}, method::String, url::HTTP.URIs.URI, headers::Vector{Pair{SubString{String}, SubString{String}}}, body::Vector{UInt8}; http_version::VersionNumber, target::String, parent::Nothing, iofunction::Nothing, kw::Base.Iterators.Pairs{Symbol, Bool, Tuple{Symbol}, NamedTuple{(:reached_redirect_limit,), Tuple{Bool}}})
@ HTTP.MessageRequest ~/.julia/packages/HTTP/IAI92/src/MessageRequest.jl:51
[12] request(::Type{HTTP.BasicAuthRequest.BasicAuthLayer{HTTP.MessageRequest.MessageLayer{HTTP.RetryRequest.RetryLayer{HTTP.ExceptionRequest.ExceptionLayer{HTTP.ConnectionRequest.ConnectionPoolLayer{HTTP.StreamRequest.StreamLayer{Union{}}}}}}}}, method::String, url::HTTP.URIs.URI, headers::Vector{Pair{SubString{String}, SubString{String}}}, body::Vector{UInt8}; kw::Base.Iterators.Pairs{Symbol, Bool, Tuple{Symbol}, NamedTuple{(:reached_redirect_limit,), Tuple{Bool}}})
@ HTTP.BasicAuthRequest ~/.julia/packages/HTTP/IAI92/src/BasicAuthRequest.jl:28
[13] request(::Type{HTTP.RedirectRequest.RedirectLayer{HTTP.BasicAuthRequest.BasicAuthLayer{HTTP.MessageRequest.MessageLayer{HTTP.RetryRequest.RetryLayer{HTTP.ExceptionRequest.ExceptionLayer{HTTP.ConnectionRequest.ConnectionPoolLayer{HTTP.StreamRequest.StreamLayer{Union{}}}}}}}}}, method::String, url::HTTP.URIs.URI, headers::Vector{Pair{SubString{String}, SubString{String}}}, body::Vector{UInt8}; redirect_limit::Int64, forwardheaders::Bool, kw::Base.Iterators.Pairs{Union{}, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ HTTP.RedirectRequest ~/.julia/packages/HTTP/IAI92/src/RedirectRequest.jl:24
[14] request(::Type{HTTP.RedirectRequest.RedirectLayer{HTTP.BasicAuthRequest.BasicAuthLayer{HTTP.MessageRequest.MessageLayer{HTTP.RetryRequest.RetryLayer{HTTP.ExceptionRequest.ExceptionLayer{HTTP.ConnectionRequest.ConnectionPoolLayer{HTTP.StreamRequest.StreamLayer{Union{}}}}}}}}}, method::String, url::HTTP.URIs.URI, headers::Vector{Pair{SubString{String}, SubString{String}}}, body::Vector{UInt8})
@ HTTP.RedirectRequest ~/.julia/packages/HTTP/IAI92/src/RedirectRequest.jl:21
[15] request(method::String, url::String, h::Vector{Pair{SubString{String}, SubString{String}}}, b::Vector{UInt8}; headers::Vector{Pair{SubString{String}, SubString{String}}}, body::Vector{UInt8}, query::Nothing, kw::Base.Iterators.Pairs{Union{}, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ HTTP ~/.julia/packages/HTTP/IAI92/src/HTTP.jl:314
[16] request
@ ~/.julia/packages/HTTP/IAI92/src/HTTP.jl:314 [inlined]
[17] getpage_raw
@ ~/.julia/packages/DataDepsGenerators/6JYi6/src/utils.jl:34 [inlined]
[18] ComposedFunction
@ ./operators.jl:916 [inlined]
[19] mainpage_url(repo::TERN, dataname::String)
@ DataDepsGenerators ~/.julia/packages/DataDepsGenerators/6JYi6/src/generate.jl:121
[20] find_metadata(repo::TERN, dataname::String, shortname::Nothing)
@ DataDepsGenerators ~/.julia/packages/DataDepsGenerators/6JYi6/src/generate.jl:72
[21] #generate#7
@ ~/.julia/packages/DataDepsGenerators/6JYi6/src/generate.jl:25 [inlined]
[22] generate
@ ~/.julia/packages/DataDepsGenerators/6JYi6/src/generate.jl:25 [inlined]
[23] top-level scope
@ ~/.julia/packages/DataDepsGenerators/6JYi6/test/DataOneV2/TERN.jl:7
[24] top-level scope
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Test/src/Test.jl:1113
[25] top-level scope
@ ~/.julia/packages/DataDepsGenerators/6JYi6/test/DataOneV2/TERN.jl:7
[26] include(fname::String)
@ Base.MainInclude ./client.jl:444
[27] macro expansion
@ ~/.julia/packages/DataDepsGenerators/6JYi6/test/runtests.jl:21 [inlined]
[28] macro expansion
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Test/src/Test.jl:1113 [inlined]
[29] macro expansion
@ ~/.julia/packages/DataDepsGenerators/6JYi6/test/runtests.jl:21 [inlined]
[30] macro expansion
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Test/src/Test.jl:1113 [inlined]
[31] top-level scope
@ ~/.julia/packages/DataDepsGenerators/6JYi6/test/runtests.jl:19
[32] include(fname::String)
@ Base.MainInclude ./client.jl:444
[33] top-level scope
@ none:6
[34] eval(m::Module, e::Any)
@ Core ./boot.jl:360
[35] exec_options(opts::Base.JLOptions)
@ Base ./client.jl:261
[36] _start()
@ Base ./client.jl:485
CKAN Demo test: Error During Test at /home/pkgeval/.julia/packages/DataDepsGenerators/6JYi6/test/CKAN.jl:6
Got exception outside of a @test
HTTP.ExceptionRequest.StatusError(404, "GET", "/api/3/action/package_show?id=gold-prices", HTTP.Messages.Response:
"""
HTTP/1.1 404 Not Found
Date: Tue, 29 Sep 2020 04:44:27 GMT
Content-Type: application/json;charset=utf-8
Content-Length: 156
Connection: keep-alive
Set-Cookie: __cfduid=db27acd36fd2800550f1fc25c9df5645c1601354667; expires=Thu, 29-Oct-20 04:44:27 GMT; path=/; domain=.ckan.org; HttpOnly; SameSite=Lax; Secure
CF-Cache-Status: DYNAMIC
cf-request-id: 0579c62dda0000ccd601831200000001
Expect-CT: max-age=604800, report-uri="https://report-uri.cloudflare.com/cdn-cgi/beacon/expect-ct"
Report-To: {"endpoints":[{"url":"https:\/\/a.nel.cloudflare.com\/report?lkg-colo=11&lkg-time=1601354668"}],"group":"cf-nel","max_age":604800}
NEL: {"report_to":"cf-nel","max_age":604800}
Server: cloudflare
CF-RAY: 5da30c8fcb5eccd6-EWR
{"help": "https://demo.ckan.org/api/3/action/help_show?name=package_show", "success": false, "error": {"message": "Not found", "__type": "Not Found Error"}}""")
Stacktrace:
[1] request(::Type{HTTP.ExceptionRequest.ExceptionLayer{HTTP.ConnectionRequest.ConnectionPoolLayer{HTTP.StreamRequest.StreamLayer{Union{}}}}}, ::HTTP.URIs.URI, ::Vararg{Any, N} where N; kw::Base.Iterators.Pairs{Symbol, Union{Nothing, Bool}, Tuple{Symbol, Symbol}, NamedTuple{(:iofunction, :reached_redirect_limit), Tuple{Nothing, Bool}}})
@ HTTP.ExceptionRequest ~/.julia/packages/HTTP/IAI92/src/ExceptionRequest.jl:22
[2] (::Base.var"#67#69"{Base.var"#67#68#70"{ExponentialBackOff, HTTP.RetryRequest.var"#2#3"{Bool, HTTP.Messages.Request}, typeof(HTTP.request)}})(::Type, ::Vararg{Any, N} where N; kwargs::Base.Iterators.Pairs{Symbol, Union{Nothing, Bool}, Tuple{Symbol, Symbol}, NamedTuple{(:iofunction, :reached_redirect_limit), Tuple{Nothing, Bool}}})
@ Base ./error.jl:288
[3] #request#1
@ ~/.julia/packages/HTTP/IAI92/src/RetryRequest.jl:44 [inlined]
[4] request(::Type{HTTP.MessageRequest.MessageLayer{HTTP.RetryRequest.RetryLayer{HTTP.ExceptionRequest.ExceptionLayer{HTTP.ConnectionRequest.ConnectionPoolLayer{HTTP.StreamRequest.StreamLayer{Union{}}}}}}}, method::String, url::HTTP.URIs.URI, headers::Vector{Pair{SubString{String}, SubString{String}}}, body::Vector{UInt8}; http_version::VersionNumber, target::String, parent::Nothing, iofunction::Nothing, kw::Base.Iterators.Pairs{Symbol, Bool, Tuple{Symbol}, NamedTuple{(:reached_redirect_limit,), Tuple{Bool}}})
@ HTTP.MessageRequest ~/.julia/packages/HTTP/IAI92/src/MessageRequest.jl:51
[5] request(::Type{HTTP.BasicAuthRequest.BasicAuthLayer{HTTP.MessageRequest.MessageLayer{HTTP.RetryRequest.RetryLayer{HTTP.ExceptionRequest.ExceptionLayer{HTTP.ConnectionRequest.ConnectionPoolLayer{HTTP.StreamRequest.StreamLayer{Union{}}}}}}}}, method::String, url::HTTP.URIs.URI, headers::Vector{Pair{SubString{String}, SubString{String}}}, body::Vector{UInt8}; kw::Base.Iterators.Pairs{Symbol, Bool, Tuple{Symbol}, NamedTuple{(:reached_redirect_limit,), Tuple{Bool}}})
@ HTTP.BasicAuthRequest ~/.julia/packages/HTTP/IAI92/src/BasicAuthRequest.jl:28
[6] request(::Type{HTTP.RedirectRequest.RedirectLayer{HTTP.BasicAuthRequest.BasicAuthLayer{HTTP.MessageRequest.MessageLayer{HTTP.RetryRequest.RetryLayer{HTTP.ExceptionRequest.ExceptionLayer{HTTP.ConnectionRequest.ConnectionPoolLayer{HTTP.StreamRequest.StreamLayer{Union{}}}}}}}}}, method::String, url::HTTP.URIs.URI, headers::Vector{Pair{SubString{String}, SubString{String}}}, body::Vector{UInt8}; redirect_limit::Int64, forwardheaders::Bool, kw::Base.Iterators.Pairs{Union{}, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ HTTP.RedirectRequest ~/.julia/packages/HTTP/IAI92/src/RedirectRequest.jl:24
[7] request(::Type{HTTP.RedirectRequest.RedirectLayer{HTTP.BasicAuthRequest.BasicAuthLayer{HTTP.MessageRequest.MessageLayer{HTTP.RetryRequest.RetryLayer{HTTP.ExceptionRequest.ExceptionLayer{HTTP.ConnectionRequest.ConnectionPoolLayer{HTTP.StreamRequest.StreamLayer{Union{}}}}}}}}}, method::String, url::HTTP.URIs.URI, headers::Vector{Pair{SubString{String}, SubString{String}}}, body::Vector{UInt8})
@ HTTP.RedirectRequest ~/.julia/packages/HTTP/IAI92/src/RedirectRequest.jl:21
[8] request(method::String, url::String, h::Vector{Pair{SubString{String}, SubString{String}}}, b::Vector{UInt8}; headers::Vector{Pair{SubString{String}, SubString{String}}}, body::Vector{UInt8}, query::Nothing, kw::Base.Iterators.Pairs{Union{}, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ HTTP ~/.julia/packages/HTTP/IAI92/src/HTTP.jl:314
[9] request
@ ~/.julia/packages/HTTP/IAI92/src/HTTP.jl:314 [inlined]
[10] getpage_raw
@ ~/.julia/packages/DataDepsGenerators/6JYi6/src/utils.jl:34 [inlined]
[11] ComposedFunction
@ ./operators.jl:916 [inlined]
[12] mainpage_url(repo::CKAN, dataname::String)
@ DataDepsGenerators ~/.julia/packages/DataDepsGenerators/6JYi6/src/APIs/CKAN.jl:34
[13] find_metadata(repo::CKAN, dataname::String, shortname::Nothing)
@ DataDepsGenerators ~/.julia/packages/DataDepsGenerators/6JYi6/src/generate.jl:72
[14] #generate#7
@ ~/.julia/packages/DataDepsGenerators/6JYi6/src/generate.jl:25 [inlined]
[15] generate
@ ~/.julia/packages/DataDepsGenerators/6JYi6/src/generate.jl:25 [inlined]
[16] top-level scope
@ ~/.julia/packages/DataDepsGenerators/6JYi6/test/CKAN.jl:9
[17] top-level scope
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Test/src/Test.jl:1113
[18] top-level scope
@ ~/.julia/packages/DataDepsGenerators/6JYi6/test/CKAN.jl:9
[19] include(fname::String)
@ Base.MainInclude ./client.jl:444
[20] macro expansion
@ ~/.julia/packages/DataDepsGenerators/6JYi6/test/runtests.jl:21 [inlined]
[21] macro expansion
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Test/src/Test.jl:1113 [inlined]
[22] macro expansion
@ ~/.julia/packages/DataDepsGenerators/6JYi6/test/runtests.jl:21 [inlined]
[23] macro expansion
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Test/src/Test.jl:1113 [inlined]
[24] top-level scope
@ ~/.julia/packages/DataDepsGenerators/6JYi6/test/runtests.jl:19
[25] include(fname::String)
@ Base.MainInclude ./client.jl:444
[26] top-level scope
@ none:6
[27] eval(m::Module, e::Any)
@ Core ./boot.jl:360
[28] exec_options(opts::Base.JLOptions)
@ Base ./client.jl:261
[29] _start()
@ Base ./client.jl:485
Integration Test: Error During Test at /home/pkgeval/.julia/packages/DataDepsGenerators/6JYi6/test/CKAN.jl:15
Got exception outside of a @test
Base.Meta.ParseError("invalid interpolation syntax: \"\$1\"")
Stacktrace:
[1] #parse#1
@ ./meta.jl:186 [inlined]
[2] parse(str::String; raise::Bool, depwarn::Bool)
@ Base.Meta ./meta.jl:217
[3] parse(str::String)
@ Base.Meta ./meta.jl:217
[4] top-level scope
@ ~/.julia/packages/DataDepsGenerators/6JYi6/test/CKAN.jl:16
[5] top-level scope
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Test/src/Test.jl:1113
[6] top-level scope
@ ~/.julia/packages/DataDepsGenerators/6JYi6/test/CKAN.jl:16
[7] top-level scope
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Test/src/Test.jl:1113
[8] top-level scope
@ ~/.julia/packages/DataDepsGenerators/6JYi6/test/CKAN.jl:13
[9] include(fname::String)
@ Base.MainInclude ./client.jl:444
[10] macro expansion
@ ~/.julia/packages/DataDepsGenerators/6JYi6/test/runtests.jl:21 [inlined]
[11] macro expansion
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Test/src/Test.jl:1113 [inlined]
[12] macro expansion
@ ~/.julia/packages/DataDepsGenerators/6JYi6/test/runtests.jl:21 [inlined]
[13] macro expansion
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Test/src/Test.jl:1113 [inlined]
[14] top-level scope
@ ~/.julia/packages/DataDepsGenerators/6JYi6/test/runtests.jl:19
[15] include(fname::String)
@ Base.MainInclude ./client.jl:444
[16] top-level scope
@ none:6
[17] eval(m::Module, e::Any)
@ Core ./boot.jl:360
[18] exec_options(opts::Base.JLOptions)
@ Base ./client.jl:261
[19] _start()
@ Base ./client.jl:485
Test for "CKAN Consumer Complaint.txt" failed.
- DIFF ------------------------
"""
register(DataDep(
\"Consumer Complaint Database\",
\"\"\"
\tDataset: Consumer Complaint Database
\tWebsite: https://catalog.data.gov/dataset/consumer-complaint-database
\tAuthor:
\tMaintainer: [email protected]
\tDate of Creation: February 26, 2014
\tLicense: License not specified
- \tThese are complaints we’ve received about financial products and services.
+ \tThe Consumer Complaint Database is a collection of complaints about consumer financial products and services that we sent to companies for response. Complaints are published after the company responds, confirming a commercial relationship with the consumer, or after 15 days, whichever comes first. Complaints referred to other regulators, such as complaints about depository institutions with less than $10 billion in assets, are not published in the Consumer Complaint Database. The database generally updates daily.
\t\"\"\",
- \tAny[\"https://data.consumerfinance.gov/api/views/s6ew-h6mp/rows.csv?accessType=DOWNLOAD\", \"https://data.consumerfinance.gov/api/views/s6ew-h6mp/rows.csv?accessType=DOWNLOAD\", \"http://data.consumerfinance.gov/api/views.json\", \"http://data.consumerfinance.gov/api/views.xml\", \"http://data.consumerfinance.gov/api/views/s6ew-h6mp.json\"],
+ \tAny[\"https://files.consumerfinance.gov/ccdb/complaints.csv.zip\", \"https://files.consumerfinance.gov/ccdb/complaints.json.zip\", \"https://www.consumerfinance.gov/data-research/consumer-complaints/search/api/v1/\"],
))"""
-------------------------------
data.gov test: Error During Test at /home/pkgeval/.julia/packages/DataDepsGenerators/6JYi6/test/CKAN.jl:12
Got exception outside of a @test
You need to run the tests interactively with 'include("test/runtests.jl")' to update reference images
Stacktrace:
[1] error(s::String)
@ Base ./error.jl:33
[2] test_reference(file::FileIO.File{FileIO.DataFormat{:TXT}}, raw_actual::String, equiv::Nothing, rendermode::Nothing; kw::Base.Iterators.Pairs{Union{}, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ ReferenceTests ~/.julia/packages/ReferenceTests/JDrHL/src/test_reference.jl:140
[3] test_reference(file::FileIO.File{FileIO.DataFormat{:TXT}}, raw_actual::String, equiv::Nothing, rendermode::Nothing)
@ ReferenceTests ~/.julia/packages/ReferenceTests/JDrHL/src/test_reference.jl:100
[4] test_reference(filename::String, raw_actual::String; by::Nothing, render::Nothing, kw::Base.Iterators.Pairs{Union{}, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ ReferenceTests ~/.julia/packages/ReferenceTests/JDrHL/src/test_reference.jl:90
[5] test_reference(filename::String, raw_actual::String)
@ ReferenceTests ~/.julia/packages/ReferenceTests/JDrHL/src/test_reference.jl:90
[6] top-level scope
@ ~/.julia/packages/DataDepsGenerators/6JYi6/test/CKAN.jl:20
[7] top-level scope
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Test/src/Test.jl:1113
[8] top-level scope
@ ~/.julia/packages/DataDepsGenerators/6JYi6/test/CKAN.jl:13
[9] include(fname::String)
@ Base.MainInclude ./client.jl:444
[10] macro expansion
@ ~/.julia/packages/DataDepsGenerators/6JYi6/test/runtests.jl:21 [inlined]
[11] macro expansion
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Test/src/Test.jl:1113 [inlined]
[12] macro expansion
@ ~/.julia/packages/DataDepsGenerators/6JYi6/test/runtests.jl:21 [inlined]
[13] macro expansion
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Test/src/Test.jl:1113 [inlined]
[14] top-level scope
@ ~/.julia/packages/DataDepsGenerators/6JYi6/test/runtests.jl:19
[15] include(fname::String)
@ Base.MainInclude ./client.jl:444
[16] top-level scope
@ none:6
[17] eval(m::Module, e::Any)
@ Core ./boot.jl:360
[18] exec_options(opts::Base.JLOptions)
@ Base ./client.jl:261
[19] _start()
@ Base ./client.jl:485
Test for "DataCite Ecology.txt" failed.
- DIFF ------------------------
"""
register(DataDep(
\"Data from Ecology and genomics of an important crop wild relative as a prelude to agricultural innovation\",
\"\"\"
\tDataset: Data from: Ecology and genomics of an important crop wild relative as a prelude to agricultural innovation
\tWebsite: https://doi.org/10.5061/dryad.74699
\tAuthor: Eric J. B. Von Wettberg et al.
\tDate of Publication: 2018
- \tLicense: https://creativecommons.org/publicdomain/zero/1.0/
+ \tLicense: https://creativecommons.org/publicdomain/zero/1.0/legalcode
- \t
- \tPlease cite this paper: Von Wettberg, E. J. B., Chang, P. L., Başdemir, F., Carrasquila-Garcia, N., Korbu, L. B., Moenga, S. M., … Cook, D. R. (2018). Ecology and genomics of an important crop wild relative as a prelude to agricultural innovation. Nature Communications, 9(1). doi:10.1038/s41467-018-02867-z
+ \tDomesticated species are impacted in unintended ways during domestication and breeding. Changes in the nature and intensity of selection impart genetic drift, reduce diversity, and increase the frequency of deleterious alleles. Such outcomes constrain our ability to expand the cultivation of crops into environments that differ from those under which domestication occurred. We address this need in chickpea, an important pulse legume, by harnessing the diversity of wild crop relatives. We document an extreme domestication-related genetic bottleneck and decipher the genetic history of wild populations. We provide evidence of ancestral adaptations for seed coat color crypsis, estimate the impact of environment on genetic structure and trait values, and demonstrate variation between wild and cultivated accessions for agronomic properties. A resource of genotyped, association mapping progeny functionally links the wild and cultivated gene pools and is an essential resource chickpea for improvement, while our methods inform collection of other wild crop progenitor species.
\t
- \tPlease cite this dataset: Von Wettberg, E. J. B., Chang, P. L., Başdemir, F., Carrasquila-Garcia, N., Korbu, L., Moenga, S. M., … Cook, D. R. (2018). Data from: Ecology and genomics of an important crop wild relative as a prelude to agricultural innovation [Data set]. Dryad Digital Repository. https://doi.org/10.5061/dryad.74699
+ \tPlease cite this dataset: Von Wettberg, E. J. B., Chang, P. L., Başdemir, F., Carrasquila-Garcia, N., Korbu, L., Moenga, S. M., Bedada, G., Greenlon, A., Moriuchi, K. S., Suryawanshi, V., Cordeiro, M. A., Noujdina, N. V., Dinegde, K. N., Abbas Shah Sani, S. G., Getahun, T., Vance, L., Bergmann, E., Lindsay, D., Mamo, B. E., … Cook, D. R. (2018). <i>Data from: Ecology and genomics of an important crop wild relative as a prelude to agricultural innovation</i> [Data set]. Dryad. https://doi.org/10.5061/DRYAD.74699
\t\"\"\",
\tmissing,
))"""
-------------------------------
DataCite test: Error During Test at /home/pkgeval/.julia/packages/DataDepsGenerators/6JYi6/test/DataCite.jl:6
Got exception outside of a @test
You need to run the tests interactively with 'include("test/runtests.jl")' to update reference images
Stacktrace:
[1] error(s::String)
@ Base ./error.jl:33
[2] test_reference(file::FileIO.File{FileIO.DataFormat{:TXT}}, raw_actual::String, equiv::Nothing, rendermode::Nothing; kw::Base.Iterators.Pairs{Union{}, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ ReferenceTests ~/.julia/packages/ReferenceTests/JDrHL/src/test_reference.jl:140
[3] test_reference(file::FileIO.File{FileIO.DataFormat{:TXT}}, raw_actual::String, equiv::Nothing, rendermode::Nothing)
@ ReferenceTests ~/.julia/packages/ReferenceTests/JDrHL/src/test_reference.jl:100
[4] test_reference(filename::String, raw_actual::String; by::Nothing, render::Nothing, kw::Base.Iterators.Pairs{Union{}, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ ReferenceTests ~/.julia/packages/ReferenceTests/JDrHL/src/test_reference.jl:90
[5] test_reference(filename::String, raw_actual::String)
@ ReferenceTests ~/.julia/packages/ReferenceTests/JDrHL/src/test_reference.jl:90
[6] top-level scope
@ ~/.julia/packages/DataDepsGenerators/6JYi6/test/DataCite.jl:7
[7] top-level scope
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Test/src/Test.jl:1113
[8] top-level scope
@ ~/.julia/packages/DataDepsGenerators/6JYi6/test/DataCite.jl:7
[9] include(fname::String)
@ Base.MainInclude ./client.jl:444
[10] macro expansion
@ ~/.julia/packages/DataDepsGenerators/6JYi6/test/runtests.jl:21 [inlined]
[11] macro expansion
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Test/src/Test.jl:1113 [inlined]
[12] macro expansion
@ ~/.julia/packages/DataDepsGenerators/6JYi6/test/runtests.jl:21 [inlined]
[13] macro expansion
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Test/src/Test.jl:1113 [inlined]
[14] top-level scope
@ ~/.julia/packages/DataDepsGenerators/6JYi6/test/runtests.jl:19
[15] include(fname::String)
@ Base.MainInclude ./client.jl:444
[16] top-level scope
@ none:6
[17] eval(m::Module, e::Any)
@ Core ./boot.jl:360
[18] exec_options(opts::Base.JLOptions)
@ Base ./client.jl:261
[19] _start()
@ Base ./client.jl:485
[ Info: Generated registration block uses MD5 hashes, the MD5.jl package will be required.
Integration Test: Error During Test at /home/pkgeval/.julia/packages/DataDepsGenerators/6JYi6/test/Figshare.jl:14
Test threw exception
Expression: length(collect(readdir(datadep"Youth Activism in Chile from urban educational inequalities to experiences of living together and solidarity"))) > 0
DataDeps.DisabledError("DataDeps download disabled, as we appear to be in a CI environment, and the environment variable `DATADEPS_ALWAYS_ACCEPT` is not set.\nIf this is indeed running in a headless CI environment, then set the `DATADEPS_ALWAYS_ACCEPT` environment variable to `true` to bypass the accept download prompt (if you do wish to always accept.)\nIf not, then either unset the `CI` environment variable from true, or set `DATADEPS_ALWAYS_ACCEPT` to `false` for the normal prompt behaviour.")
Stacktrace:
[1] ensure_download_permitted()
@ DataDeps ~/.julia/packages/DataDeps/gbyoa/src/resolution_automatic.jl:26
[2] download(datadep::DataDep{Vector{Tuple{typeof(md5), String}}, Vector{Any}, typeof(DataDeps.fetch_default), typeof(identity)}, localdir::String; remotepath::Vector{Any}, i_accept_the_terms_of_use::Nothing, skip_checksum::Bool)
@ DataDeps ~/.julia/packages/DataDeps/gbyoa/src/resolution_automatic.jl:70
[3] download
@ ~/.julia/packages/DataDeps/gbyoa/src/resolution_automatic.jl:70 [inlined]
[4] handle_missing
@ ~/.julia/packages/DataDeps/gbyoa/src/resolution_automatic.jl:10 [inlined]
[5] _resolve(datadep::DataDep{Vector{Tuple{typeof(md5), String}}, Vector{Any}, typeof(DataDeps.fetch_default), typeof(identity)}, calling_filepath::String)
@ DataDeps ~/.julia/packages/DataDeps/gbyoa/src/resolution.jl:83
[6] resolve(datadep::DataDep{Vector{Tuple{typeof(md5), String}}, Vector{Any}, typeof(DataDeps.fetch_default), typeof(identity)}, inner_filepath::String, calling_filepath::String)
@ DataDeps ~/.julia/packages/DataDeps/gbyoa/src/resolution.jl:29
[7] resolve(datadep_name::String, inner_filepath::String, calling_filepath::String)
@ DataDeps ~/.julia/packages/DataDeps/gbyoa/src/resolution.jl:54
[8] resolve(namepath::String, calling_filepath::String)
@ DataDeps ~/.julia/packages/DataDeps/gbyoa/src/resolution.jl:73
[9] top-level scope
@ ~/.julia/packages/DataDepsGenerators/6JYi6/test/Figshare.jl:14
[10] top-level scope
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Test/src/Test.jl:1113
[11] top-level scope
@ ~/.julia/packages/DataDepsGenerators/6JYi6/test/Figshare.jl:13