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1.6.0-DEV-22b5d93b2b.log
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Julia Version 1.6.0-DEV.1069
Commit 22b5d93b2b (2020-09-28 17:33 UTC)
Platform Info:
OS: Linux (x86_64-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-10.0.1 (ORCJIT, skylake-avx512)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
Installed Missings ───────────────────── v0.4.4
Installed InvertedIndices ────────────── v1.0.0
Installed Compat ─────────────────────── v3.17.0
Installed SimpleTraits ───────────────── v0.9.3
Installed QuadGK ─────────────────────── v2.4.1
Installed Requires ───────────────────── v1.0.3
Installed DataStructures ─────────────── v0.17.20
Installed Autologistic ───────────────── v0.4.2
Installed Rmath_jll ──────────────────── v0.2.2+1
Installed Calculus ───────────────────── v0.5.1
Installed NLSolversBase ──────────────── v7.5.0
Installed PositiveFactorizations ─────── v0.2.3
Installed DiffResults ────────────────── v1.0.2
Installed ArrayInterface ─────────────── v2.13.3
Installed WeakRefStrings ─────────────── v0.6.2
Installed SortingAlgorithms ──────────── v0.3.1
Installed CompilerSupportLibraries_jll ─ v0.3.3+0
Installed Tables ─────────────────────── v1.0.5
Installed ForwardDiff ────────────────── v0.10.12
Installed Arpack_jll ─────────────────── v3.5.0+3
Installed OpenBLAS_jll ───────────────── v0.3.10+0
Installed Distributions ──────────────── v0.22.6
Installed DiffRules ──────────────────── v1.0.1
Installed LineSearches ───────────────── v7.1.0
Installed CommonSubexpressions ───────── v0.3.0
Installed Inflate ────────────────────── v0.1.2
Installed PDMats ─────────────────────── v0.9.12
Installed PooledArrays ───────────────── v0.5.3
Installed DataValueInterfaces ────────── v1.0.0
Installed SpecialFunctions ───────────── v0.10.3
Installed Optim ──────────────────────── v0.20.6
Installed TableTraits ────────────────── v1.0.0
Installed FilePathsBase ──────────────── v0.7.0
Installed OpenSpecFun_jll ────────────── v0.5.3+3
Installed OrderedCollections ─────────── v1.3.1
Installed DataAPI ────────────────────── v1.3.0
Installed UnPack ─────────────────────── v1.0.2
Installed Reexport ───────────────────── v0.2.0
Installed Parsers ────────────────────── v0.3.12
Installed MacroTools ─────────────────── v0.5.5
Installed StatsFuns ──────────────────── v0.9.5
Installed JSON ───────────────────────── v0.21.1
Installed FillArrays ─────────────────── v0.8.14
Installed CSV ────────────────────────── v0.5.26
Installed StaticArrays ───────────────── v0.12.4
Installed CategoricalArrays ──────────── v0.7.7
Installed StatsBase ──────────────────── v0.32.2
Installed IteratorInterfaceExtensions ── v1.0.0
Installed NaNMath ────────────────────── v0.3.4
Installed Rmath ──────────────────────── v0.6.1
Installed DiffEqDiffTools ────────────── v1.7.0
Installed ArnoldiMethod ──────────────── v0.0.4
Installed DataFrames ─────────────────── v0.20.2
Installed Parameters ─────────────────── v0.12.1
Installed Arpack ─────────────────────── v0.4.0
Installed LightGraphs ────────────────── v1.3.3
Updating `~/.julia/environments/v1.6/Project.toml`
[4d03fd4d] + Autologistic v0.4.2
Updating `~/.julia/environments/v1.6/Manifest.toml`
[ec485272] + ArnoldiMethod v0.0.4
[7d9fca2a] + Arpack v0.4.0
[68821587] + Arpack_jll v3.5.0+3
[4fba245c] + ArrayInterface v2.13.3
[4d03fd4d] + Autologistic v0.4.2
[336ed68f] + CSV v0.5.26
[49dc2e85] + Calculus v0.5.1
[324d7699] + CategoricalArrays v0.7.7
[bbf7d656] + CommonSubexpressions v0.3.0
[34da2185] + Compat v3.17.0
[e66e0078] + CompilerSupportLibraries_jll v0.3.3+0
[9a962f9c] + DataAPI v1.3.0
[a93c6f00] + DataFrames v0.20.2
[864edb3b] + DataStructures v0.17.20
[e2d170a0] + DataValueInterfaces v1.0.0
[01453d9d] + DiffEqDiffTools v1.7.0
[163ba53b] + DiffResults v1.0.2
[b552c78f] + DiffRules v1.0.1
[31c24e10] + Distributions v0.22.6
[48062228] + FilePathsBase v0.7.0
[1a297f60] + FillArrays v0.8.14
[f6369f11] + ForwardDiff v0.10.12
[d25df0c9] + Inflate v0.1.2
[41ab1584] + InvertedIndices v1.0.0
[82899510] + IteratorInterfaceExtensions v1.0.0
[682c06a0] + JSON v0.21.1
[093fc24a] + LightGraphs v1.3.3
[d3d80556] + LineSearches v7.1.0
[1914dd2f] + MacroTools v0.5.5
[e1d29d7a] + Missings v0.4.4
[d41bc354] + NLSolversBase v7.5.0
[77ba4419] + NaNMath v0.3.4
[4536629a] + OpenBLAS_jll v0.3.10+0
[efe28fd5] + OpenSpecFun_jll v0.5.3+3
[429524aa] + Optim v0.20.6
[bac558e1] + OrderedCollections v1.3.1
[90014a1f] + PDMats v0.9.12
[d96e819e] + Parameters v0.12.1
[69de0a69] + Parsers v0.3.12
[2dfb63ee] + PooledArrays v0.5.3
[85a6dd25] + PositiveFactorizations v0.2.3
[1fd47b50] + QuadGK v2.4.1
[189a3867] + Reexport v0.2.0
[ae029012] + Requires v1.0.3
[79098fc4] + Rmath v0.6.1
[f50d1b31] + Rmath_jll v0.2.2+1
[699a6c99] + SimpleTraits v0.9.3
[a2af1166] + SortingAlgorithms v0.3.1
[276daf66] + SpecialFunctions v0.10.3
[90137ffa] + StaticArrays v0.12.4
[2913bbd2] + StatsBase v0.32.2
[4c63d2b9] + StatsFuns v0.9.5
[3783bdb8] + TableTraits v1.0.0
[bd369af6] + Tables v1.0.5
[3a884ed6] + UnPack v1.0.2
[ea10d353] + WeakRefStrings v0.6.2
[56f22d72] + Artifacts
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[9fa8497b] + Future
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[4607b0f0] + SuiteSparse
[fa267f1f] + TOML
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Testing Autologistic
Status `/tmp/jl_Uh0YA4/Project.toml`
[4d03fd4d] Autologistic v0.4.2
[336ed68f] CSV v0.5.26
[31c24e10] Distributions v0.22.6
[093fc24a] LightGraphs v1.3.3
[429524aa] Optim v0.20.6
[8ba89e20] Distributed
[37e2e46d] LinearAlgebra
[9a3f8284] Random
[1a1011a3] SharedArrays
[2f01184e] SparseArrays
[10745b16] Statistics
[8dfed614] Test
Status `/tmp/jl_Uh0YA4/Manifest.toml`
[ec485272] ArnoldiMethod v0.0.4
[7d9fca2a] Arpack v0.4.0
[68821587] Arpack_jll v3.5.0+3
[4fba245c] ArrayInterface v2.13.3
[4d03fd4d] Autologistic v0.4.2
[336ed68f] CSV v0.5.26
[49dc2e85] Calculus v0.5.1
[324d7699] CategoricalArrays v0.7.7
[bbf7d656] CommonSubexpressions v0.3.0
[34da2185] Compat v3.17.0
[e66e0078] CompilerSupportLibraries_jll v0.3.3+0
[9a962f9c] DataAPI v1.3.0
[a93c6f00] DataFrames v0.20.2
[864edb3b] DataStructures v0.17.20
[e2d170a0] DataValueInterfaces v1.0.0
[01453d9d] DiffEqDiffTools v1.7.0
[163ba53b] DiffResults v1.0.2
[b552c78f] DiffRules v1.0.1
[31c24e10] Distributions v0.22.6
[48062228] FilePathsBase v0.7.0
[1a297f60] FillArrays v0.8.14
[f6369f11] ForwardDiff v0.10.12
[d25df0c9] Inflate v0.1.2
[41ab1584] InvertedIndices v1.0.0
[82899510] IteratorInterfaceExtensions v1.0.0
[682c06a0] JSON v0.21.1
[093fc24a] LightGraphs v1.3.3
[d3d80556] LineSearches v7.1.0
[1914dd2f] MacroTools v0.5.5
[e1d29d7a] Missings v0.4.4
[d41bc354] NLSolversBase v7.5.0
[77ba4419] NaNMath v0.3.4
[4536629a] OpenBLAS_jll v0.3.10+0
[efe28fd5] OpenSpecFun_jll v0.5.3+3
[429524aa] Optim v0.20.6
[bac558e1] OrderedCollections v1.3.1
[90014a1f] PDMats v0.9.12
[d96e819e] Parameters v0.12.1
[69de0a69] Parsers v0.3.12
[2dfb63ee] PooledArrays v0.5.3
[85a6dd25] PositiveFactorizations v0.2.3
[1fd47b50] QuadGK v2.4.1
[189a3867] Reexport v0.2.0
[ae029012] Requires v1.0.3
[79098fc4] Rmath v0.6.1
[f50d1b31] Rmath_jll v0.2.2+1
[699a6c99] SimpleTraits v0.9.3
[a2af1166] SortingAlgorithms v0.3.1
[276daf66] SpecialFunctions v0.10.3
[90137ffa] StaticArrays v0.12.4
[2913bbd2] StatsBase v0.32.2
[4c63d2b9] StatsFuns v0.9.5
[3783bdb8] TableTraits v1.0.0
[bd369af6] Tables v1.0.5
[3a884ed6] UnPack v1.0.2
[ea10d353] WeakRefStrings v0.6.2
[56f22d72] Artifacts
[2a0f44e3] Base64
[ade2ca70] Dates
[8bb1440f] DelimitedFiles
[8ba89e20] Distributed
[9fa8497b] Future
[b77e0a4c] InteractiveUtils
[76f85450] LibGit2
[8f399da3] Libdl
[37e2e46d] LinearAlgebra
[56ddb016] Logging
[d6f4376e] Markdown
[a63ad114] Mmap
[44cfe95a] Pkg
[de0858da] Printf
[3fa0cd96] REPL
[9a3f8284] Random
[ea8e919c] SHA
[9e88b42a] Serialization
[1a1011a3] SharedArrays
[6462fe0b] Sockets
[2f01184e] SparseArrays
[10745b16] Statistics
[4607b0f0] SuiteSparse
[fa267f1f] TOML
[8dfed614] Test
[cf7118a7] UUIDs
[4ec0a83e] Unicode
Testing Running tests...
Running tests:
Test Summary: | Pass Total
FullUnary constructors and interfaces | 8 8
Test Summary: | Pass Total
LinPredUnary constructors and interfaces | 7 7
Test Summary: | Pass Total
SimplePairwise constructors and interfaces | 6 6
Test Summary: | Pass Total
FullPairwise constructors and interfaces | 5 5
Test Summary: | Pass Total
ALRsimple constructors | 8 8
Test Summary: | Pass Total
ALsimple constructors | 14 14
Test Summary: | Pass Total
ALfull constructors | 7 7
Test Summary: | Pass Total
Helper functions | 15 15
Test Summary: | Pass Total
almodel_functions | 18 18
Test Summary: | Pass Total
samplers | 17 17
Calling Optim.optimize with BFGS method...
signal (11): Segmentation fault
in expression starting at /home/pkgeval/.julia/packages/Autologistic/Ta8VT/test/runtests.jl:361
uv_write2 at /workspace/srcdir/libuv/src/unix/stream.c:1402
uv_write at /workspace/srcdir/libuv/src/unix/stream.c:1497
jl_uv_write at /workspace/srcdir/src/jl_uv.c:471
uv_write_async at ./stream.jl:1024
uv_write at ./stream.jl:981
unsafe_write at ./stream.jl:1064
unsafe_write at ./io.jl:646 [inlined]
write at ./io.jl:669 [inlined]
format at /workspace/srcdir/usr/share/julia/stdlib/v1.6/Printf/src/Printf.jl:729
print_header at /home/pkgeval/.julia/packages/Optim/UkDyx/src/types.jl:152 [inlined]
optimize at /home/pkgeval/.julia/packages/Optim/UkDyx/src/multivariate/optimize/optimize.jl:50
optimize at /home/pkgeval/.julia/packages/Optim/UkDyx/src/multivariate/optimize/optimize.jl:33 [inlined]
#optimize#93 at /home/pkgeval/.julia/packages/Optim/UkDyx/src/multivariate/optimize/interface.jl:116 [inlined]
optimize at /home/pkgeval/.julia/packages/Optim/UkDyx/src/multivariate/optimize/interface.jl:115 [inlined]
#fit_ml!#39 at /home/pkgeval/.julia/packages/Autologistic/Ta8VT/src/abstractautologisticmodel_type.jl:551
fit_ml!##kw at /home/pkgeval/.julia/packages/Autologistic/Ta8VT/src/abstractautologisticmodel_type.jl:541
unknown function (ip: 0x7fabab7ace75)
_jl_invoke at /workspace/srcdir/src/gf.c:2192 [inlined]
jl_apply_generic at /workspace/srcdir/src/gf.c:2374
jl_apply at /workspace/srcdir/src/julia.h:1687 [inlined]
do_call at /workspace/srcdir/src/interpreter.c:115
eval_value at /workspace/srcdir/src/interpreter.c:204
eval_body at /workspace/srcdir/src/interpreter.c:434
eval_body at /workspace/srcdir/src/interpreter.c:489
eval_body at /workspace/srcdir/src/interpreter.c:489
jl_interpret_toplevel_thunk at /workspace/srcdir/src/interpreter.c:669
jl_toplevel_eval_flex at /workspace/srcdir/src/toplevel.c:837
jl_toplevel_eval_flex at /workspace/srcdir/src/toplevel.c:785
jl_toplevel_eval_in at /workspace/srcdir/src/toplevel.c:880
eval at ./boot.jl:360 [inlined]
include_string at ./loading.jl:1026
_jl_invoke at /workspace/srcdir/src/gf.c:2192 [inlined]
jl_apply_generic at /workspace/srcdir/src/gf.c:2374
_include at ./loading.jl:1080
include at ./client.jl:444
_jl_invoke at /workspace/srcdir/src/gf.c:2192 [inlined]
jl_apply_generic at /workspace/srcdir/src/gf.c:2374
jl_apply at /workspace/srcdir/src/julia.h:1687 [inlined]
do_call at /workspace/srcdir/src/interpreter.c:115
eval_value at /workspace/srcdir/src/interpreter.c:204
eval_stmt_value at /workspace/srcdir/src/interpreter.c:155 [inlined]
eval_body at /workspace/srcdir/src/interpreter.c:561
jl_interpret_toplevel_thunk at /workspace/srcdir/src/interpreter.c:669
jl_toplevel_eval_flex at /workspace/srcdir/src/toplevel.c:837
jl_toplevel_eval_flex at /workspace/srcdir/src/toplevel.c:785
jl_toplevel_eval_in at /workspace/srcdir/src/toplevel.c:880
eval at ./boot.jl:360
_jl_invoke at /workspace/srcdir/src/gf.c:2192 [inlined]
jl_apply_generic at /workspace/srcdir/src/gf.c:2374
exec_options at ./client.jl:261
_start at ./client.jl:485
jfptr__start_36143.clone_1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /workspace/srcdir/src/gf.c:2192 [inlined]
jl_apply_generic at /workspace/srcdir/src/gf.c:2374
jl_apply at /workspace/srcdir/src/julia.h:1687 [inlined]
true_main at /workspace/srcdir/src/jlapi.c:553
repl_entrypoint at /workspace/srcdir/src/jlapi.c:672
main at /workspace/srcdir/cli/loader_exe.c:46
__libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
unknown function (ip: 0x400bae)
Allocations: 65021222 (Pool: 65000665; Big: 20557); GC: 76
ERROR: Package Autologistic errored during testing (received signal: 11)
Stacktrace:
[1] pkgerror(msg::String)
@ Pkg.Types /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/Types.jl:52
[2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing)
@ Pkg.Operations /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/Operations.jl:1609
[3] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, kwargs::Base.Iterators.Pairs{Union{}, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ Pkg.API /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:331
[4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec})
@ Pkg.API /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:318
[5] #test#62
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:68 [inlined]
[6] test
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:68 [inlined]
[7] #test#61
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:66 [inlined]
[8] test
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:66 [inlined]
[9] test(pkg::String; kwargs::Base.Iterators.Pairs{Union{}, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ Pkg.API /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:65
[10] test(pkg::String)
@ Pkg.API /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:65
[11] top-level scope
@ none:19