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1.6.0-DEV-22b5d93b2b.log
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Julia Version 1.6.0-DEV.1069
Commit 22b5d93b2b (2020-09-28 17:33 UTC)
Platform Info:
OS: Linux (x86_64-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-10.0.1 (ORCJIT, skylake-avx512)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
Installed Zstd_jll ───────────────────── v1.4.5+1
Installed Zlib_jll ───────────────────── v1.2.11+16
Installed CodecZlib ──────────────────── v0.7.0
Installed Compat ─────────────────────── v3.17.0
Installed PyPlot ─────────────────────── v2.9.0
Installed TranscodingStreams ─────────── v0.9.5
Installed FFTW ───────────────────────── v1.2.4
Installed ADCMEKit ───────────────────── v0.2.3
Installed CompilerSupportLibraries_jll ─ v0.3.3+0
Installed VersionParsing ─────────────── v1.2.0
Installed Blosc_jll ──────────────────── v1.14.3+1
Installed ColorTypes ─────────────────── v0.10.9
Installed AbstractFFTs ───────────────── v0.5.0
Installed Conda ──────────────────────── v1.4.1
Installed BufferedStreams ────────────── v1.0.0
Installed HDF5 ───────────────────────── v0.13.6
Installed FFTW_jll ───────────────────── v3.3.9+5
Installed HDF5_jll ───────────────────── v1.10.5+6
Installed URIParser ──────────────────── v0.4.1
Installed FixedPointNumbers ──────────── v0.8.4
Installed Parsers ────────────────────── v1.0.10
Installed OpenSpecFun_jll ────────────── v0.5.3+3
Installed SpecialFunctions ───────────── v0.10.3
Installed JSON ───────────────────────── v0.21.1
Installed Reexport ───────────────────── v0.2.0
Installed LaTeXStrings ───────────────── v1.2.0
Installed IntelOpenMP_jll ────────────── v2018.0.3+0
Installed MacroTools ─────────────────── v0.5.5
Installed Blosc ──────────────────────── v0.7.0
Installed CMake ──────────────────────── v1.2.0
Installed Colors ─────────────────────── v0.12.4
Installed BinDeps ────────────────────── v1.0.1
Installed PyCall ─────────────────────── v1.92.0
Installed MKL_jll ────────────────────── v2020.2.254+0
Installed Lz4_jll ────────────────────── v1.9.2+2
Installed MAT ────────────────────────── v0.8.1
Installed ADCME ──────────────────────── v0.5.12
Updating `~/.julia/environments/v1.6/Project.toml`
[b6719975] + ADCMEKit v0.2.3
Updating `~/.julia/environments/v1.6/Manifest.toml`
[07b341a0] + ADCME v0.5.12
[b6719975] + ADCMEKit v0.2.3
[621f4979] + AbstractFFTs v0.5.0
[9e28174c] + BinDeps v1.0.1
[a74b3585] + Blosc v0.7.0
[0b7ba130] + Blosc_jll v1.14.3+1
[e1450e63] + BufferedStreams v1.0.0
[631607c0] + CMake v1.2.0
[944b1d66] + CodecZlib v0.7.0
[3da002f7] + ColorTypes v0.10.9
[5ae59095] + Colors v0.12.4
[34da2185] + Compat v3.17.0
[e66e0078] + CompilerSupportLibraries_jll v0.3.3+0
[8f4d0f93] + Conda v1.4.1
[7a1cc6ca] + FFTW v1.2.4
[f5851436] + FFTW_jll v3.3.9+5
[53c48c17] + FixedPointNumbers v0.8.4
[f67ccb44] + HDF5 v0.13.6
[0234f1f7] + HDF5_jll v1.10.5+6
[1d5cc7b8] + IntelOpenMP_jll v2018.0.3+0
[682c06a0] + JSON v0.21.1
[b964fa9f] + LaTeXStrings v1.2.0
[5ced341a] + Lz4_jll v1.9.2+2
[23992714] + MAT v0.8.1
[856f044c] + MKL_jll v2020.2.254+0
[1914dd2f] + MacroTools v0.5.5
[efe28fd5] + OpenSpecFun_jll v0.5.3+3
[69de0a69] + Parsers v1.0.10
[438e738f] + PyCall v1.92.0
[d330b81b] + PyPlot v2.9.0
[189a3867] + Reexport v0.2.0
[276daf66] + SpecialFunctions v0.10.3
[3bb67fe8] + TranscodingStreams v0.9.5
[30578b45] + URIParser v0.4.1
[81def892] + VersionParsing v1.2.0
[83775a58] + Zlib_jll v1.2.11+16
[3161d3a3] + Zstd_jll v1.4.5+1
[56f22d72] + Artifacts
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[fa267f1f] + TOML
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building Conda ───→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/7a58bb32ce5d85f8bf7559aa7c2842f9aecf52fc/build.log`
Building PyCall ──→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/b4e471a2b1739dba687d22d3293aa16bc5f3925b/build.log`
Building CMake ───→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/50a8b41d2c562fccd9ab841085fc7d1e2706da82/build.log`
Building HDF5 ────→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/0713cbabdf855852dfab3ce6447c87145f3d9ea8/build.log`
Building FFTW ────→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/8b7c16b56936047ca41bf25effa137ae0b381ae8/build.log`
Building ADCME ───→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/75cced9fa2823c1212528caf9c0eed055ccb734a/build.log`
Building ADCMEKit → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/e61342ce0edf8177479315b8a861c6927593c647/build.log`
Testing ADCMEKit
Status `/tmp/jl_bCbqJb/Project.toml`
[07b341a0] ADCME v0.5.12
[b6719975] ADCMEKit v0.2.3
[8f4d0f93] Conda v1.4.1
[438e738f] PyCall v1.92.0
[d330b81b] PyPlot v2.9.0
[37e2e46d] LinearAlgebra
Status `/tmp/jl_bCbqJb/Manifest.toml`
[07b341a0] ADCME v0.5.12
[b6719975] ADCMEKit v0.2.3
[621f4979] AbstractFFTs v0.5.0
[9e28174c] BinDeps v1.0.1
[a74b3585] Blosc v0.7.0
[0b7ba130] Blosc_jll v1.14.3+1
[e1450e63] BufferedStreams v1.0.0
[631607c0] CMake v1.2.0
[944b1d66] CodecZlib v0.7.0
[3da002f7] ColorTypes v0.10.9
[5ae59095] Colors v0.12.4
[34da2185] Compat v3.17.0
[e66e0078] CompilerSupportLibraries_jll v0.3.3+0
[8f4d0f93] Conda v1.4.1
[7a1cc6ca] FFTW v1.2.4
[f5851436] FFTW_jll v3.3.9+5
[53c48c17] FixedPointNumbers v0.8.4
[f67ccb44] HDF5 v0.13.6
[0234f1f7] HDF5_jll v1.10.5+6
[1d5cc7b8] IntelOpenMP_jll v2018.0.3+0
[682c06a0] JSON v0.21.1
[b964fa9f] LaTeXStrings v1.2.0
[5ced341a] Lz4_jll v1.9.2+2
[23992714] MAT v0.8.1
[856f044c] MKL_jll v2020.2.254+0
[1914dd2f] MacroTools v0.5.5
[efe28fd5] OpenSpecFun_jll v0.5.3+3
[69de0a69] Parsers v1.0.10
[438e738f] PyCall v1.92.0
[d330b81b] PyPlot v2.9.0
[189a3867] Reexport v0.2.0
[276daf66] SpecialFunctions v0.10.3
[3bb67fe8] TranscodingStreams v0.9.5
[30578b45] URIParser v0.4.1
[81def892] VersionParsing v1.2.0
[83775a58] Zlib_jll v1.2.11+16
[3161d3a3] Zstd_jll v1.4.5+1
[56f22d72] Artifacts
[2a0f44e3] Base64
[ade2ca70] Dates
[8bb1440f] DelimitedFiles
[8ba89e20] Distributed
[b77e0a4c] InteractiveUtils
[76f85450] LibGit2
[8f399da3] Libdl
[37e2e46d] LinearAlgebra
[56ddb016] Logging
[d6f4376e] Markdown
[a63ad114] Mmap
[44cfe95a] Pkg
[de0858da] Printf
[3fa0cd96] REPL
[9a3f8284] Random
[ea8e919c] SHA
[9e88b42a] Serialization
[1a1011a3] SharedArrays
[6462fe0b] Sockets
[2f01184e] SparseArrays
[10745b16] Statistics
[fa267f1f] TOML
[8dfed614] Test
[cf7118a7] UUIDs
[4ec0a83e] Unicode
Testing Running tests...
Matplotlib is building the font cache; this may take a moment.
WARNING: Method definition size(PyCall.PyObject) in module PyCall at /home/pkgeval/.julia/packages/PyCall/l64G5/src/PyCall.jl:809 overwritten in module ADCME at /home/pkgeval/.julia/packages/ADCME/PJIHk/src/variable.jl:212.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition length(PyCall.PyObject) in module PyCall at /home/pkgeval/.julia/packages/PyCall/l64G5/src/PyCall.jl:808 overwritten in module ADCME at /home/pkgeval/.julia/packages/ADCME/PJIHk/src/variable.jl:236.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition lastindex(PyCall.PyObject) in module PyCall at deprecated.jl:70 overwritten in module ADCME at /home/pkgeval/.julia/packages/ADCME/PJIHk/src/variable.jl:424.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition *(PyCall.PyObject, PyCall.PyObject) in module PyCall at /home/pkgeval/.julia/packages/PyCall/l64G5/src/pyoperators.jl:11 overwritten in module ADCME at /home/pkgeval/.julia/packages/ADCME/PJIHk/src/ops.jl:102.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition size(PyCall.PyObject) in module PyCall at /home/pkgeval/.julia/packages/PyCall/l64G5/src/PyCall.jl:809 overwritten in module ADCME at /home/pkgeval/.julia/packages/ADCME/PJIHk/src/variable.jl:212.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition *(PyCall.PyObject, PyCall.PyObject) in module PyCall at /home/pkgeval/.julia/packages/PyCall/l64G5/src/pyoperators.jl:11 overwritten in module ADCME at /home/pkgeval/.julia/packages/ADCME/PJIHk/src/ops.jl:102.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition length(PyCall.PyObject) in module PyCall at /home/pkgeval/.julia/packages/PyCall/l64G5/src/PyCall.jl:808 overwritten in module ADCME at /home/pkgeval/.julia/packages/ADCME/PJIHk/src/variable.jl:236.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition lastindex(PyCall.PyObject) in module PyCall at deprecated.jl:70 overwritten in module ADCME at /home/pkgeval/.julia/packages/ADCME/PJIHk/src/variable.jl:424.
** incremental compilation may be fatally broken for this module **
[ Info: You are using ADCME for the first time. Precompiling built-in custom operators may take some time...
-- The C compiler identification is GNU 5.4.0
-- The CXX compiler identification is GNU 5.4.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /home/pkgeval/.julia/adcme/bin/x86_64-conda_cos6-linux-gnu-gcc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /home/pkgeval/.julia/adcme/bin/x86_64-conda_cos6-linux-gnu-g++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
JULIA=/opt/julia/bin/julia
┌ Warning: Cannot load /home/pkgeval/.julia/packages/ADCME/PJIHk/deps/CustomOps/build/libadcme.so. Please recompile the shared library by `ADCME.precompile()` for using custom operators.
└ @ ADCME ~/.julia/packages/ADCME/PJIHk/src/ADCME.jl:95
Python path=/home/pkgeval/.julia/adcme/bin/python
PREFIXDIR=/home/pkgeval/.julia/adcme/lib/Libraries
TF_INC=/home/pkgeval/.julia/adcme/lib/python3.7/site-packages/tensorflow_core/include
TF_ABI=1
TF_LIB_FILE=/home/pkgeval/.julia/adcme/lib/python3.7/site-packages/tensorflow_core/libtensorflow_framework.so.1
MPI_INCLUDE_PATH and/or MPI_C_LIBRARIES is not set. MPI operators are not compiled.
-- Found OpenMP_C: -fopenmp (found version "4.0")
-- Found OpenMP_CXX: -fopenmp (found version "4.0")
-- Found OpenMP: TRUE (found version "4.0")
OPENMP Found
-- Configuring done
-- Generating done
-- Build files have been written to: /home/pkgeval/.julia/packages/ADCME/PJIHk/deps/CustomOps/build
[1/19] Building CXX object CMakeFiles/adcme.dir/SparseAccumulate/Impl.cpp.o
[2/19] Building CXX object CMakeFiles/adcme.dir/OT/src/sinkhorn.cpp.o
[3/19] Building CXX object CMakeFiles/adcme.dir/TriSolve/TriSolve.cpp.o
[4/19] Building CXX object CMakeFiles/adcme.dir/SparseFactorizationSolve/lru_cache.cpp.o
[5/19] Building CXX object CMakeFiles/adcme.dir/SparseAccumulate/SparseAccumulator.cpp.o
[6/19] Building CXX object CMakeFiles/adcme.dir/PrintTensor/PrintTensor.cpp.o
[7/19] Building CXX object CMakeFiles/adcme.dir/SparseConcate/SparseConcate.cpp.o
[8/19] Building CXX object CMakeFiles/adcme.dir/SparseToDense/SparseToDense.cpp.o
[9/19] Building CXX object CMakeFiles/adcme.dir/TriLu/TriLu.cpp.o
[10/19] Building CXX object CMakeFiles/adcme.dir/OT/SinkhornKnopp/SinkhornKnopp.cpp.o
[11/19] Building CXX object CMakeFiles/adcme.dir/SparseScatterUpdate/SparseScatterUpdate.cpp.o
[12/19] Building CXX object CMakeFiles/adcme.dir/SparseMatMul/SparseMatMul.cpp.o
[13/19] Building CXX object CMakeFiles/adcme.dir/SparseIndexing/SparseIndexing.cpp.o
[14/19] Building CXX object CMakeFiles/adcme.dir/SparseFactorizationSolve/Solve/Solve.cpp.o
[15/19] Building CXX object CMakeFiles/adcme.dir/SolveBatchedRhs/SolveBatchedRhs.cpp.o
[16/19] Building CXX object CMakeFiles/adcme.dir/SparseFactorizationSolve/Factorization/SparseFactorization.cpp.o
[17/19] Building CXX object CMakeFiles/adcme.dir/SparseLeastSquare/SparseLeastSquare.cpp.o
[18/19] Building CXX object CMakeFiles/adcme.dir/SparseSolver/SparseSolver.cpp.o
[19/19] Linking CXX shared library libadcme.so
┌ Warning: /home/pkgeval/.julia/conda/3/bin is not in the system path. This will make SMT unavailable from command line
└ @ ADCMEKit ~/.julia/packages/ADCMEKit/Iikxe/src/ADCMEKit.jl:23
ERROR: LoadError: ArgumentError: Package Test not found in current path:
- Run `import Pkg; Pkg.add("Test")` to install the Test package.
Stacktrace:
[1] require(into::Module, mod::Symbol)
@ Base ./loading.jl:803
[2] include(fname::String)
@ Base.MainInclude ./client.jl:444
[3] top-level scope
@ none:6
in expression starting at /home/pkgeval/.julia/packages/ADCMEKit/Iikxe/test/runtests.jl:3
ERROR: Package ADCMEKit errored during testing
Stacktrace:
[1] pkgerror(msg::String)
@ Pkg.Types /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/Types.jl:52
[2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing)
@ Pkg.Operations /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/Operations.jl:1609
[3] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, kwargs::Base.Iterators.Pairs{Union{}, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ Pkg.API /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:331
[4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec})
@ Pkg.API /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:318
[5] #test#62
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:68 [inlined]
[6] test
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:68 [inlined]
[7] #test#61
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:66 [inlined]
[8] test
@ /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:66 [inlined]
[9] test(pkg::String; kwargs::Base.Iterators.Pairs{Union{}, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ Pkg.API /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:65
[10] test(pkg::String)
@ Pkg.API /workspace/srcdir/usr/share/julia/stdlib/v1.6/Pkg/src/API.jl:65
[11] top-level scope
@ none:19