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1.5.0-DEV-e0740fe5a6.log
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Julia Version 1.5.0-DEV.147
Commit e0740fe5a6 (2020-01-24 14:13 UTC)
Platform Info:
OS: Linux (x86_64-pc-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-8.0.1 (ORCJIT, skylake)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
Installed FFTW_jll ──────────────────── v3.3.9+3
Installed Combinatorics ─────────────── v1.0.0
Installed Requires ──────────────────── v1.0.0
Installed AbstractFFTs ──────────────── v0.5.0
Installed TableTraits ───────────────── v1.0.0
Installed MuladdMacro ───────────────── v0.2.2
Installed IterTools ─────────────────── v1.3.0
Installed StateSpaceReconstruction ──── v0.4.2
Installed ChainRulesCore ────────────── v0.5.5
Installed ArrayInterface ────────────── v2.3.1
Installed Missings ──────────────────── v0.4.3
Installed Compat ────────────────────── v2.2.0
Installed NearestNeighbors ──────────── v0.4.4
Installed IteratorInterfaceExtensions ─ v1.0.0
Installed OrderedCollections ────────── v1.1.0
Installed StatsBase ─────────────────── v0.32.0
Installed IterativeSolvers ──────────── v0.8.1
Installed OpenSpecFun_jll ───────────── v0.5.3+1
Installed RecipesBase ───────────────── v0.7.0
Installed AxisAlgorithms ────────────── v1.0.0
Installed RecursiveArrayTools ───────── v2.0.4
Installed DelayEmbeddings ───────────── v1.3.0
Installed PyCall ────────────────────── v1.91.2
Installed Distributions ─────────────── v0.22.3
Installed DiffEqBase ────────────────── v6.13.0
Installed Conda ─────────────────────── v1.3.0
Installed Arpack ────────────────────── v0.4.0
Installed Reexport ──────────────────── v0.2.0
Installed CommonSubexpressions ──────── v0.2.0
Installed JSON ──────────────────────── v0.21.0
Installed Roots ─────────────────────── v0.8.4
Installed IntelOpenMP_jll ───────────── v2018.0.3+0
Installed Ratios ────────────────────── v0.3.1
Installed Simplices ─────────────────── v0.4.1
Installed FFTW ──────────────────────── v1.2.0
Installed FillArrays ────────────────── v0.8.4
Installed OffsetArrays ──────────────── v1.0.2
Installed Distances ─────────────────── v0.8.2
Installed NaNMath ───────────────────── v0.3.3
Installed DataStructures ────────────── v0.17.9
Installed MacroTools ────────────────── v0.5.3
Installed DocStringExtensions ───────── v0.8.1
Installed StatsFuns ─────────────────── v0.9.3
Installed PDMats ────────────────────── v0.9.11
Installed StaticArrays ──────────────── v0.12.1
Installed DataAPI ───────────────────── v1.1.0
Installed ForwardDiff ───────────────── v0.10.9
Installed Measurements ──────────────── v2.1.1
Installed DiffRules ─────────────────── v1.0.0
Installed DynamicalSystemsBase ──────── v1.5.0
Installed FunctionWrappers ──────────── v1.0.0
Installed QuadGK ────────────────────── v2.3.1
Installed SimpleDiffEq ──────────────── v1.1.0
Installed WoodburyMatrices ──────────── v0.5.0
Installed SpecialFunctions ──────────── v0.9.0
Installed BinaryProvider ────────────── v0.5.8
Installed Rmath ─────────────────────── v0.6.0
Installed Arpack_jll ────────────────── v3.5.0+2
Installed Calculus ──────────────────── v0.5.1
Installed VersionParsing ────────────── v1.2.0
Installed OpenBLAS_jll ──────────────── v0.3.7+4
Installed Parsers ───────────────────── v0.3.10
Installed DiffResults ───────────────── v1.0.2
Installed LombScargle ───────────────── v0.5.0
Installed Polynomials ───────────────── v0.6.0
Installed Interpolations ────────────── v0.12.7
Installed ChaosTools ────────────────── v1.8.0
Installed SortingAlgorithms ─────────── v0.3.1
Installed TreeViews ─────────────────── v0.3.0
Installed ZygoteRules ───────────────── v0.2.0
Installed Parameters ────────────────── v0.12.0
Installed MKL_jll ───────────────────── v2019.0.117+2
Installed RecursiveFactorization ────── v0.1.0
Installed CausalityToolsBase ────────── v0.7.0
Installed DSP ───────────────────────── v0.6.3
Updating `~/.julia/environments/v1.5/Project.toml`
[1441a9f6] + StateSpaceReconstruction v0.4.2
Updating `~/.julia/environments/v1.5/Manifest.toml`
[621f4979] + AbstractFFTs v0.5.0
[7d9fca2a] + Arpack v0.4.0
[68821587] + Arpack_jll v3.5.0+2
[4fba245c] + ArrayInterface v2.3.1
[13072b0f] + AxisAlgorithms v1.0.0
[b99e7846] + BinaryProvider v0.5.8
[49dc2e85] + Calculus v0.5.1
[b1f25513] + CausalityToolsBase v0.7.0
[d360d2e6] + ChainRulesCore v0.5.5
[608a59af] + ChaosTools v1.8.0
[861a8166] + Combinatorics v1.0.0
[bbf7d656] + CommonSubexpressions v0.2.0
[34da2185] + Compat v2.2.0
[8f4d0f93] + Conda v1.3.0
[717857b8] + DSP v0.6.3
[9a962f9c] + DataAPI v1.1.0
[864edb3b] + DataStructures v0.17.9
[5732040d] + DelayEmbeddings v1.3.0
[2b5f629d] + DiffEqBase v6.13.0
[163ba53b] + DiffResults v1.0.2
[b552c78f] + DiffRules v1.0.0
[b4f34e82] + Distances v0.8.2
[31c24e10] + Distributions v0.22.3
[ffbed154] + DocStringExtensions v0.8.1
[6e36e845] + DynamicalSystemsBase v1.5.0
[7a1cc6ca] + FFTW v1.2.0
[f5851436] + FFTW_jll v3.3.9+3
[1a297f60] + FillArrays v0.8.4
[f6369f11] + ForwardDiff v0.10.9
[069b7b12] + FunctionWrappers v1.0.0
[1d5cc7b8] + IntelOpenMP_jll v2018.0.3+0
[a98d9a8b] + Interpolations v0.12.7
[c8e1da08] + IterTools v1.3.0
[42fd0dbc] + IterativeSolvers v0.8.1
[82899510] + IteratorInterfaceExtensions v1.0.0
[682c06a0] + JSON v0.21.0
[fc60dff9] + LombScargle v0.5.0
[856f044c] + MKL_jll v2019.0.117+2
[1914dd2f] + MacroTools v0.5.3
[eff96d63] + Measurements v2.1.1
[e1d29d7a] + Missings v0.4.3
[46d2c3a1] + MuladdMacro v0.2.2
[77ba4419] + NaNMath v0.3.3
[b8a86587] + NearestNeighbors v0.4.4
[6fe1bfb0] + OffsetArrays v1.0.2
[4536629a] + OpenBLAS_jll v0.3.7+4
[efe28fd5] + OpenSpecFun_jll v0.5.3+1
[bac558e1] + OrderedCollections v1.1.0
[90014a1f] + PDMats v0.9.11
[d96e819e] + Parameters v0.12.0
[69de0a69] + Parsers v0.3.10
[f27b6e38] + Polynomials v0.6.0
[438e738f] + PyCall v1.91.2
[1fd47b50] + QuadGK v2.3.1
[c84ed2f1] + Ratios v0.3.1
[3cdcf5f2] + RecipesBase v0.7.0
[731186ca] + RecursiveArrayTools v2.0.4
[f2c3362d] + RecursiveFactorization v0.1.0
[189a3867] + Reexport v0.2.0
[ae029012] + Requires v1.0.0
[79098fc4] + Rmath v0.6.0
[f2b01f46] + Roots v0.8.4
[05bca326] + SimpleDiffEq v1.1.0
[d5428e67] + Simplices v0.4.1
[a2af1166] + SortingAlgorithms v0.3.1
[276daf66] + SpecialFunctions v0.9.0
[1441a9f6] + StateSpaceReconstruction v0.4.2
[90137ffa] + StaticArrays v0.12.1
[2913bbd2] + StatsBase v0.32.0
[4c63d2b9] + StatsFuns v0.9.3
[3783bdb8] + TableTraits v1.0.0
[a2a6695c] + TreeViews v0.3.0
[81def892] + VersionParsing v1.2.0
[efce3f68] + WoodburyMatrices v0.5.0
[700de1a5] + ZygoteRules v0.2.0
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[4607b0f0] + SuiteSparse
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building Conda ─→ `~/.julia/packages/Conda/kLXeC/deps/build.log`
Updating `/tmp/jl_zL6R6W/Project.toml`
[no changes]
Updating `/tmp/jl_zL6R6W/Manifest.toml`
[no changes]
Building PyCall → `~/.julia/packages/PyCall/ttONZ/deps/build.log`
Updating `/tmp/jl_6XpmkU/Project.toml`
[no changes]
Updating `/tmp/jl_6XpmkU/Manifest.toml`
[no changes]
Building FFTW ──→ `~/.julia/packages/FFTW/qqcBj/deps/build.log`
Updating `/tmp/jl_TDrOOk/Project.toml`
[no changes]
Updating `/tmp/jl_TDrOOk/Manifest.toml`
[no changes]
Building Rmath ─→ `~/.julia/packages/Rmath/BoBag/deps/build.log`
Updating `/tmp/jl_e044JN/Project.toml`
[no changes]
Updating `/tmp/jl_e044JN/Manifest.toml`
[no changes]
Testing StateSpaceReconstruction
Updating `/tmp/jl_xz74XT/Project.toml`
[no changes]
Updating `/tmp/jl_xz74XT/Manifest.toml`
[no changes]
Running sandbox
Status `/tmp/jl_xz74XT/Project.toml`
[b1f25513] CausalityToolsBase v0.7.0
[8f4d0f93] Conda v1.3.0
[5732040d] DelayEmbeddings v1.3.0
[b4f34e82] Distances v0.8.2
[31c24e10] Distributions v0.22.3
[b8a86587] NearestNeighbors v0.4.4
[438e738f] PyCall v1.91.2
[3cdcf5f2] RecipesBase v0.7.0
[189a3867] Reexport v0.2.0
[d5428e67] Simplices v0.4.1
[1441a9f6] StateSpaceReconstruction v0.4.2
[90137ffa] StaticArrays v0.12.1
[37e2e46d] LinearAlgebra
[10745b16] Statistics
[8dfed614] Test
Building Conda ─→ `~/.julia/packages/Conda/kLXeC/deps/build.log`
Updating `/tmp/jl_J5uvOL/Project.toml`
[no changes]
Updating `/tmp/jl_J5uvOL/Manifest.toml`
[no changes]
Building PyCall → `~/.julia/packages/PyCall/ttONZ/deps/build.log`
Updating `/tmp/jl_7AIeRu/Project.toml`
[no changes]
Updating `/tmp/jl_7AIeRu/Manifest.toml`
[no changes]
[ Info: Running `conda install -q -y scipy` in root environment
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /home/pkgeval/.julia/conda/3
added / updated specs:
- scipy
The following packages will be downloaded:
package | build
---------------------------|-----------------
scipy-1.3.2 | py37h7c811a0_0 13.9 MB
------------------------------------------------------------
Total: 13.9 MB
The following NEW packages will be INSTALLED:
scipy pkgs/main/linux-64::scipy-1.3.2-py37h7c811a0_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
WARNING: Method definition (::Type{PyCall.PyObject})(LinearAlgebra.Adjoint{T, S} where S where T) in module PyCall at /home/pkgeval/.julia/packages/PyCall/ttONZ/src/numpy.jl:227 overwritten in module Delaunay at /home/pkgeval/.julia/packages/Simplices/HqUrD/src/Delaunay.jl:11.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition (::Type{PyCall.PyObject})(LinearAlgebra.Adjoint{T, S} where S where T) in module PyCall at /home/pkgeval/.julia/packages/PyCall/ttONZ/src/numpy.jl:227 overwritten in module Delaunay at /home/pkgeval/.julia/packages/Simplices/HqUrD/src/Delaunay.jl:11.
** incremental compilation may be fatally broken for this module **
Building Conda ─→ `~/.julia/packages/Conda/kLXeC/deps/build.log`
Updating `/tmp/jl_uRNhBD/Project.toml`
[no changes]
Updating `/tmp/jl_uRNhBD/Manifest.toml`
[no changes]
Building PyCall → `~/.julia/packages/PyCall/ttONZ/deps/build.log`
Updating `/tmp/jl_F2S5NR/Project.toml`
[no changes]
Updating `/tmp/jl_F2S5NR/Manifest.toml`
[no changes]
[ Info: Running `conda install -q -y scipy` in root environment
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done
# All requested packages already installed.
Test Summary: | Pass Total
Embedding in 2-D | 4 4
Test Summary: | Pass Total
Embedding in 3-D | 4 4
Test Summary: | Pass Total
Embedding in 4-D | 4 4
Test Summary: | Pass Total
Alignment with and without zero-lagged vector matches | 3 3
Test Summary: | Pass Total
Interface with NearestNeighbors.jl | 3 3
Test Summary: | Pass Total
Invariantizing embeddings | 1 1
Test Summary: | Pass Total
Invariantizing points | 1 1
Test Summary: | Pass Total
Assign bin labels | 8 8
Test Summary: | Pass Total
Marginal visitation frequency | 1 1
Test Summary: | Pass Total
Immutable simplices | 14 14
Test Summary: | Pass Total
Mutable simplices | 13 13
Test Summary: | Pass Total
Volume intersections | 8 8
Test Summary: | Pass Total
Does a point lie inside simplex? | 2 2
Test Summary: | Pass Total
Refining simplices | 4 4
Test Summary: | Pass Total
Subsampling | 4 4
Test Summary: | Pass Total
Triangulation structs | 10 10
Testing StateSpaceReconstruction tests passed