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1.5.0-DEV-e0740fe5a6.log
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1.5.0-DEV-e0740fe5a6.log
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Julia Version 1.5.0-DEV.147
Commit e0740fe5a6 (2020-01-24 14:13 UTC)
Platform Info:
OS: Linux (x86_64-pc-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-8.0.1 (ORCJIT, skylake)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
Installed PooledArrays ──────────────── v0.5.3
Installed Requires ──────────────────── v1.0.0
Installed Missings ──────────────────── v0.4.3
Installed Compat ────────────────────── v3.2.0
Installed TableTraits ───────────────── v1.0.0
Installed OrderedCollections ────────── v1.1.0
Installed IteratorInterfaceExtensions ─ v1.0.0
Installed StanSample ────────────────── v2.0.0
Installed Tables ────────────────────── v0.2.11
Installed Reexport ──────────────────── v0.2.0
Installed InvertedIndices ───────────── v1.0.0
Installed ElasticArrays ─────────────── v1.0.0
Installed FilePathsBase ─────────────── v0.7.0
Installed JSON ──────────────────────── v0.21.0
Installed StanSamples ───────────────── v0.1.0
Installed Documenter ────────────────── v0.24.4
Installed StanDump ──────────────────── v0.2.0
Installed DataAPI ───────────────────── v1.1.0
Installed DataValueInterfaces ───────── v1.0.0
Installed DataStructures ────────────── v0.17.9
Installed DocStringExtensions ───────── v0.8.1
Installed CategoricalArrays ─────────── v0.7.7
Installed WeakRefStrings ────────────── v0.6.2
Installed Parsers ───────────────────── v0.3.10
Installed SortingAlgorithms ─────────── v0.3.1
Installed Parameters ────────────────── v0.12.0
Installed StanBase ──────────────────── v2.0.0
Installed ArgCheck ──────────────────── v1.0.1
Installed DataFrames ────────────────── v0.20.0
Installed CSV ───────────────────────── v0.5.22
Updating `~/.julia/environments/v1.5/Project.toml`
[c1514b29] + StanSample v2.0.0
Updating `~/.julia/environments/v1.5/Manifest.toml`
[dce04be8] + ArgCheck v1.0.1
[336ed68f] + CSV v0.5.22
[324d7699] + CategoricalArrays v0.7.7
[34da2185] + Compat v3.2.0
[9a962f9c] + DataAPI v1.1.0
[a93c6f00] + DataFrames v0.20.0
[864edb3b] + DataStructures v0.17.9
[e2d170a0] + DataValueInterfaces v1.0.0
[ffbed154] + DocStringExtensions v0.8.1
[e30172f5] + Documenter v0.24.4
[fdbdab4c] + ElasticArrays v1.0.0
[48062228] + FilePathsBase v0.7.0
[41ab1584] + InvertedIndices v1.0.0
[82899510] + IteratorInterfaceExtensions v1.0.0
[682c06a0] + JSON v0.21.0
[e1d29d7a] + Missings v0.4.3
[bac558e1] + OrderedCollections v1.1.0
[d96e819e] + Parameters v0.12.0
[69de0a69] + Parsers v0.3.10
[2dfb63ee] + PooledArrays v0.5.3
[189a3867] + Reexport v0.2.0
[ae029012] + Requires v1.0.0
[a2af1166] + SortingAlgorithms v0.3.1
[d0ee94f6] + StanBase v2.0.0
[9713c8f3] + StanDump v0.2.0
[c1514b29] + StanSample v2.0.0
[52d0d7a9] + StanSamples v0.1.0
[3783bdb8] + TableTraits v1.0.0
[bd369af6] + Tables v0.2.11
[ea10d353] + WeakRefStrings v0.6.2
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[9fa8497b] + Future
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Testing StanSample
Updating `/tmp/jl_FGGQ8J/Project.toml`
[no changes]
Updating `/tmp/jl_FGGQ8J/Manifest.toml`
[no changes]
Running sandbox
Status `/tmp/jl_FGGQ8J/Project.toml`
[336ed68f] CSV v0.5.22
[a93c6f00] DataFrames v0.20.0
[ffbed154] DocStringExtensions v0.8.1
[e30172f5] Documenter v0.24.4
[ae029012] Requires v1.0.0
[d0ee94f6] StanBase v2.0.0
[c1514b29] StanSample v2.0.0
[52d0d7a9] StanSamples v0.1.0
[8bb1440f] DelimitedFiles
[8ba89e20] Distributed
[8dfed614] Test
[4ec0a83e] Unicode
┌ Warning: Environment variable CMDSTAN_HOME not set. Use set_cmdstan_home!.
└ @ StanBase ~/.julia/packages/StanBase/FU83I/src/StanBase.jl:50
┌ Warning: Environment variable CMDSTAN_HOME not set. Use set_cmdstan_home!.
└ @ StanBase ~/.julia/packages/StanBase/FU83I/src/StanBase.jl:50
Testing: test_basic_runs/test_bernoulli_dict.jl.
/tmp/jl_6oZUkd/bernoulli.stan updated.
Bernoulli basic run tests: Error During Test at /home/pkgeval/.julia/packages/StanSample/1xbGO/test/runtests.jl:14
Got exception outside of a @test
LoadError: The environment variable JULIA_CMDSTAN_HOME needs to be set.
Stacktrace:
[1] (::StanBase.var"#1#2")() at /home/pkgeval/.julia/packages/StanBase/FU83I/src/stanmodel/cmdstan_home.jl:11
[2] (::Base.var"#464#465"{StanBase.var"#1#2"})(::String) at ./env.jl:81
[3] access_env at ./env.jl:43 [inlined]
[4] get at ./env.jl:81 [inlined]
[5] get_cmdstan_home at /home/pkgeval/.julia/packages/StanBase/FU83I/src/stanmodel/cmdstan_home.jl:10 [inlined]
[6] SampleModel(::String, ::String, ::Array{Int64,1}; seed::StanBase.RandomSeed, init::StanBase.Init, output::StanBase.Output, tmpdir::String, method::StanSample.Sample) at /home/pkgeval/.julia/packages/StanSample/1xbGO/src/stanmodel/SampleModel.jl:59
[7] top-level scope at /home/pkgeval/.julia/packages/StanSample/1xbGO/test/test_basic_runs/test_bernoulli_dict.jl:25
[8] include(::String) at ./client.jl:439
[9] macro expansion at /home/pkgeval/.julia/packages/StanSample/1xbGO/test/runtests.jl:17 [inlined]
[10] macro expansion at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1113 [inlined]
[11] top-level scope at /home/pkgeval/.julia/packages/StanSample/1xbGO/test/runtests.jl:15
[12] include(::String) at ./client.jl:439
[13] top-level scope at none:6
[14] eval(::Module, ::Any) at ./boot.jl:331
[15] exec_options(::Base.JLOptions) at ./client.jl:264
[16] _start() at ./client.jl:484
in expression starting at /home/pkgeval/.julia/packages/StanSample/1xbGO/test/test_basic_runs/test_bernoulli_dict.jl:25
Test Summary: | Error Total
Bernoulli basic run tests | 1 1
ERROR: LoadError: Some tests did not pass: 0 passed, 0 failed, 1 errored, 0 broken.
in expression starting at /home/pkgeval/.julia/packages/StanSample/1xbGO/test/runtests.jl:14
err = ProcessFailedException(Base.Process[Process(`/opt/julia/bin/julia -Cnative -J/opt/julia/lib/julia/sys.so -g1 --code-coverage=none --color=no --compiled-modules=yes --check-bounds=yes --inline=yes --startup-file=no --track-allocation=none --eval 'append!(empty!(Base.DEPOT_PATH), ["/home/pkgeval/.julia", "/opt/julia/local/share/julia", "/opt/julia/share/julia", "/usr/local/share/julia"])
append!(empty!(Base.DL_LOAD_PATH), String[])
cd("/home/pkgeval/.julia/packages/StanSample/1xbGO/test")
append!(empty!(ARGS), String[])
include("/home/pkgeval/.julia/packages/StanSample/1xbGO/test/runtests.jl")
'`, ProcessExited(1))])
ERROR: Package StanSample errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String,N} where N) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/Types.jl:54
[2] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/Operations.jl:1471
[3] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:313
[4] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:300
[5] #test#66 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:294 [inlined]
[6] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:294 [inlined]
[7] #test#65 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:293 [inlined]
[8] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:293 [inlined]
[9] test(::String; kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:292
[10] test(::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:292
[11] top-level scope at none:13