1.5.0-DEV-e0740fe5a6.log

Julia Version 1.5.0-DEV.147
Commit e0740fe5a6 (2020-01-24 14:13 UTC)
Platform Info:
  OS: Linux (x86_64-pc-linux-gnu)
  CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
  WORD_SIZE: 64
  LIBM: libopenlibm
  LLVM: libLLVM-8.0.1 (ORCJIT, skylake)
Environment:
  JULIA_DEPOT_PATH = ::/usr/local/share/julia
  JULIA_NUM_THREADS = 2

 Resolving package versions...
 Installed Missings ──────────────────── v0.4.3
 Installed Xorg_libXext_jll ──────────── v1.3.4+0
 Installed Xorg_libxcb_jll ───────────── v1.13.0+0
 Installed Xorg_xextproto_jll ────────── v7.3.0+0
 Installed SimpleTraits ──────────────── v0.9.1
 Installed Compat ────────────────────── v2.2.0
 Installed ArrayInterface ────────────── v2.3.1
 Installed StanMamba ─────────────────── v4.0.2
 Installed Bzip2_jll ─────────────────── v1.0.6+1
 Installed Widgets ───────────────────── v0.6.2
 Installed Cairo_jll ─────────────────── v1.16.0+2
 Installed Xorg_libXdmcp_jll ─────────── v1.1.3+0
 Installed Libuuid_jll ───────────────── v2.34.0+3
 Installed StatsPlots ────────────────── v0.12.0
 Installed FiniteDiff ────────────────── v2.0.0
 Installed JSON ──────────────────────── v0.21.0
 Installed InvertedIndices ───────────── v1.0.0
 Installed Inflate ───────────────────── v0.1.1
 Installed IntelOpenMP_jll ───────────── v2018.0.3+0
 Installed FilePathsBase ─────────────── v0.7.0
 Installed Distances ─────────────────── v0.8.2
 Installed Graphite2_jll ─────────────── v1.3.13+1
 Installed DataStructures ────────────── v0.17.9
 Installed DataAPI ───────────────────── v1.1.0
 Installed OffsetArrays ──────────────── v1.0.2
 Installed StatsFuns ─────────────────── v0.9.3
 Installed PlotUtils ─────────────────── v0.6.2
 Installed Xorg_kbproto_jll ──────────── v1.0.7+0
 Installed ForwardDiff ───────────────── v0.10.9
 Installed PlotThemes ────────────────── v1.0.1
 Installed BinaryProvider ────────────── v0.5.8
 Installed Loess ─────────────────────── v0.5.0
 Installed SortingAlgorithms ─────────── v0.3.1
 Installed CoupledFields ─────────────── v0.1.0
 Installed Xorg_libXrender_jll ───────── v0.9.10+0
 Installed ColorTypes ────────────────── v0.9.1
 Installed Measures ──────────────────── v0.3.1
 Installed AbstractFFTs ──────────────── v0.5.0
 Installed PositiveFactorizations ────── v0.2.3
 Installed Expat_jll ─────────────────── v2.2.7+0
 Installed Requires ──────────────────── v0.5.2
 Installed Observables ───────────────── v0.2.3
 Installed Colors ────────────────────── v0.11.2
 Installed TableTraits ───────────────── v1.0.0
 Installed MCMCChains ────────────────── v1.0.1
 Installed NearestNeighbors ──────────── v0.4.4
 Installed Gadfly ────────────────────── v1.0.1
 Installed NLSolversBase ─────────────── v7.6.0
 Installed RecipesBase ───────────────── v0.7.0
 Installed Optim ─────────────────────── v0.20.0
 Installed Plots ─────────────────────── v0.27.1
 Installed CommonSubexpressions ──────── v0.2.0
 Installed FillArrays ────────────────── v0.8.4
 Installed Graphics ──────────────────── v1.0.1
 Installed DocStringExtensions ───────── v0.8.1
 Installed KernelDensity ─────────────── v0.5.1
 Installed Glib_jll ──────────────────── v2.59.0+1
 Installed Zlib_jll ──────────────────── v1.2.11+7
 Installed Xorg_inputproto_jll ───────── v2.3.2+0
 Installed QuadGK ────────────────────── v2.3.1
 Installed Xorg_libpthread_stubs_jll ─── v0.1.0+0
 Installed SpecialFunctions ──────────── v0.9.0
 Installed WeakRefStrings ────────────── v0.6.2
 Installed FreeType2_jll ─────────────── v2.10.1+1
 Installed CategoricalArrays ─────────── v0.7.7
 Installed OpenBLAS_jll ──────────────── v0.3.7+4
 Installed DataValues ────────────────── v0.4.13
 Installed Xorg_libXau_jll ───────────── v1.0.9+0
 Installed MKL_jll ───────────────────── v2019.0.117+2
 Installed XML2_jll ──────────────────── v2.9.9+1
 Installed CSV ───────────────────────── v0.5.22
 Installed IndirectArrays ────────────── v0.5.1
 Installed LineSearches ──────────────── v7.0.1
 Installed Clustering ────────────────── v0.13.3
 Installed DataFrames ────────────────── v0.20.0
 Installed ProgressMeter ─────────────── v1.2.0
 Installed FFTW_jll ──────────────────── v3.3.9+3
 Installed IterTools ─────────────────── v1.3.0
 Installed ArnoldiMethod ─────────────── v0.0.4
 Installed Tables ────────────────────── v0.2.11
 Installed Xorg_libX11_jll ───────────── v1.6.8+0
 Installed RangeArrays ───────────────── v0.3.2
 Installed Fontconfig_jll ────────────── v2.13.1+9
 Installed IntervalSets ──────────────── v0.3.2
 Installed Compose ───────────────────── v0.7.3
 Installed LightGraphs ───────────────── v1.3.0
 Installed FriBidi_jll ───────────────── v1.0.5+2
 Installed Ratios ────────────────────── v0.3.1
 Installed MacroTools ────────────────── v0.5.3
 Installed NaNMath ───────────────────── v0.3.3
 Installed FFTW ──────────────────────── v1.2.0
 Installed Libiconv_jll ──────────────── v1.16.0+0
 Installed Xorg_renderproto_jll ──────── v0.11.1+0
 Installed X11_jll ───────────────────── v1.6.8+4
 Installed DataValueInterfaces ───────── v1.0.0
 Installed StaticArrays ──────────────── v0.12.1
 Installed Mamba ─────────────────────── v0.12.2
 Installed Media ─────────────────────── v0.5.0
 Installed WoodburyMatrices ──────────── v0.5.0
 Installed DiffRules ─────────────────── v1.0.0
 Installed Calculus ──────────────────── v0.5.1
 Installed CmdStan ───────────────────── v5.6.0
 Installed Parsers ───────────────────── v0.3.10
 Installed AbstractMCMC ──────────────── v0.2.0
 Installed Libgcrypt_jll ─────────────── v1.8.5+0
 Installed libpng_jll ────────────────── v1.6.37+2
 Installed HarfBuzz_jll ──────────────── v2.6.1+4
 Installed Cairo ─────────────────────── v1.0.2
 Installed Xorg_util_macros_jll ──────── v1.19.2+0
 Installed FFMPEG ────────────────────── v0.2.4
 Installed Parameters ────────────────── v0.12.0
 Installed PooledArrays ──────────────── v0.5.3
 Installed Pixman_jll ────────────────── v0.38.4+1
 Installed IteratorInterfaceExtensions ─ v1.0.0
 Installed FixedPointNumbers ─────────── v0.7.1
 Installed OrderedCollections ────────── v1.1.0
 Installed Xorg_xproto_jll ───────────── v7.0.31+0
 Installed StatsBase ─────────────────── v0.32.0
 Installed Xorg_xcb_proto_jll ────────── v1.13.0+0
 Installed OpenSpecFun_jll ───────────── v0.5.3+1
 Installed Arpack ────────────────────── v0.4.0
 Installed AxisAlgorithms ────────────── v1.0.0
 Installed Distributions ─────────────── v0.22.3
 Installed Gettext_jll ───────────────── v0.20.1+1
 Installed Documenter ────────────────── v0.24.4
 Installed PCRE_jll ──────────────────── v8.42.0+1
 Installed Hexagons ──────────────────── v0.2.0
 Installed Reexport ──────────────────── v0.2.0
 Installed LZO_jll ───────────────────── v2.10.0+0
 Installed PDMats ────────────────────── v0.9.11
 Installed Libffi_jll ────────────────── v3.2.1+0
 Installed Libgpg_error_jll ──────────── v1.36.0+0
 Installed XSLT_jll ──────────────────── v1.1.33+0
 Installed Arpack_jll ────────────────── v3.5.0+2
 Installed Rmath ─────────────────────── v0.6.0
 Installed DiffResults ───────────────── v1.0.2
 Installed Xorg_xtrans_jll ───────────── v1.4.0+0
 Installed Showoff ───────────────────── v0.3.1
 Installed Contour ───────────────────── v0.5.1
 Installed GeometryTypes ─────────────── v0.7.7
 Installed AxisArrays ────────────────── v0.4.1
 Installed Juno ──────────────────────── v0.7.2
 Installed Pango_jll ─────────────────── v1.42.4+7
 Installed GR ────────────────────────── v0.45.0
 Installed Interpolations ────────────── v0.12.7
  Updating `~/.julia/environments/v1.5/Project.toml`
  [1f9da163] + StanMamba v4.0.2
  Updating `~/.julia/environments/v1.5/Manifest.toml`
  [621f4979] + AbstractFFTs v0.5.0
  [80f14c24] + AbstractMCMC v0.2.0
  [ec485272] + ArnoldiMethod v0.0.4
  [7d9fca2a] + Arpack v0.4.0
  [68821587] + Arpack_jll v3.5.0+2
  [4fba245c] + ArrayInterface v2.3.1
  [13072b0f] + AxisAlgorithms v1.0.0
  [39de3d68] + AxisArrays v0.4.1
  [b99e7846] + BinaryProvider v0.5.8
  [6e34b625] + Bzip2_jll v1.0.6+1
  [336ed68f] + CSV v0.5.22
  [159f3aea] + Cairo v1.0.2
  [83423d85] + Cairo_jll v1.16.0+2
  [49dc2e85] + Calculus v0.5.1
  [324d7699] + CategoricalArrays v0.7.7
  [aaaa29a8] + Clustering v0.13.3
  [593b3428] + CmdStan v5.6.0
  [3da002f7] + ColorTypes v0.9.1
  [5ae59095] + Colors v0.11.2
  [bbf7d656] + CommonSubexpressions v0.2.0
  [34da2185] + Compat v2.2.0
  [a81c6b42] + Compose v0.7.3
  [d38c429a] + Contour v0.5.1
  [7ad07ef1] + CoupledFields v0.1.0
  [9a962f9c] + DataAPI v1.1.0
  [a93c6f00] + DataFrames v0.20.0
  [864edb3b] + DataStructures v0.17.9
  [e2d170a0] + DataValueInterfaces v1.0.0
  [e7dc6d0d] + DataValues v0.4.13
  [163ba53b] + DiffResults v1.0.2
  [b552c78f] + DiffRules v1.0.0
  [b4f34e82] + Distances v0.8.2
  [31c24e10] + Distributions v0.22.3
  [ffbed154] + DocStringExtensions v0.8.1
  [e30172f5] + Documenter v0.24.4
  [2e619515] + Expat_jll v2.2.7+0
  [c87230d0] + FFMPEG v0.2.4
  [7a1cc6ca] + FFTW v1.2.0
  [f5851436] + FFTW_jll v3.3.9+3
  [48062228] + FilePathsBase v0.7.0
  [1a297f60] + FillArrays v0.8.4
  [6a86dc24] + FiniteDiff v2.0.0
  [53c48c17] + FixedPointNumbers v0.7.1
  [a3f928ae] + Fontconfig_jll v2.13.1+9
  [f6369f11] + ForwardDiff v0.10.9
  [d7e528f0] + FreeType2_jll v2.10.1+1
  [559328eb] + FriBidi_jll v1.0.5+2
  [28b8d3ca] + GR v0.45.0
  [c91e804a] + Gadfly v1.0.1
  [4d00f742] + GeometryTypes v0.7.7
  [78b55507] + Gettext_jll v0.20.1+1
  [7746bdde] + Glib_jll v2.59.0+1
  [a2bd30eb] + Graphics v1.0.1
  [3b182d85] + Graphite2_jll v1.3.13+1
  [2e76f6c2] + HarfBuzz_jll v2.6.1+4
  [a1b4810d] + Hexagons v0.2.0
  [9b13fd28] + IndirectArrays v0.5.1
  [d25df0c9] + Inflate v0.1.1
  [1d5cc7b8] + IntelOpenMP_jll v2018.0.3+0
  [a98d9a8b] + Interpolations v0.12.7
  [8197267c] + IntervalSets v0.3.2
  [41ab1584] + InvertedIndices v1.0.0
  [c8e1da08] + IterTools v1.3.0
  [82899510] + IteratorInterfaceExtensions v1.0.0
  [682c06a0] + JSON v0.21.0
  [e5e0dc1b] + Juno v0.7.2
  [5ab0869b] + KernelDensity v0.5.1
  [dd4b983a] + LZO_jll v2.10.0+0
  [e9f186c6] + Libffi_jll v3.2.1+0
  [d4300ac3] + Libgcrypt_jll v1.8.5+0
  [7add5ba3] + Libgpg_error_jll v1.36.0+0
  [94ce4f54] + Libiconv_jll v1.16.0+0
  [38a345b3] + Libuuid_jll v2.34.0+3
  [093fc24a] + LightGraphs v1.3.0
  [d3d80556] + LineSearches v7.0.1
  [4345ca2d] + Loess v0.5.0
  [c7f686f2] + MCMCChains v1.0.1
  [856f044c] + MKL_jll v2019.0.117+2
  [1914dd2f] + MacroTools v0.5.3
  [5424a776] + Mamba v0.12.2
  [442fdcdd] + Measures v0.3.1
  [e89f7d12] + Media v0.5.0
  [e1d29d7a] + Missings v0.4.3
  [d41bc354] + NLSolversBase v7.6.0
  [77ba4419] + NaNMath v0.3.3
  [b8a86587] + NearestNeighbors v0.4.4
  [510215fc] + Observables v0.2.3
  [6fe1bfb0] + OffsetArrays v1.0.2
  [4536629a] + OpenBLAS_jll v0.3.7+4
  [efe28fd5] + OpenSpecFun_jll v0.5.3+1
  [429524aa] + Optim v0.20.0
  [bac558e1] + OrderedCollections v1.1.0
  [2f80f16e] + PCRE_jll v8.42.0+1
  [90014a1f] + PDMats v0.9.11
  [36c8627f] + Pango_jll v1.42.4+7
  [d96e819e] + Parameters v0.12.0
  [69de0a69] + Parsers v0.3.10
  [30392449] + Pixman_jll v0.38.4+1
  [ccf2f8ad] + PlotThemes v1.0.1
  [995b91a9] + PlotUtils v0.6.2
  [91a5bcdd] + Plots v0.27.1
  [2dfb63ee] + PooledArrays v0.5.3
  [85a6dd25] + PositiveFactorizations v0.2.3
  [92933f4c] + ProgressMeter v1.2.0
  [1fd47b50] + QuadGK v2.3.1
  [b3c3ace0] + RangeArrays v0.3.2
  [c84ed2f1] + Ratios v0.3.1
  [3cdcf5f2] + RecipesBase v0.7.0
  [189a3867] + Reexport v0.2.0
  [ae029012] + Requires v0.5.2
  [79098fc4] + Rmath v0.6.0
  [992d4aef] + Showoff v0.3.1
  [699a6c99] + SimpleTraits v0.9.1
  [a2af1166] + SortingAlgorithms v0.3.1
  [276daf66] + SpecialFunctions v0.9.0
  [1f9da163] + StanMamba v4.0.2
  [90137ffa] + StaticArrays v0.12.1
  [2913bbd2] + StatsBase v0.32.0
  [4c63d2b9] + StatsFuns v0.9.3
  [f3b207a7] + StatsPlots v0.12.0
  [3783bdb8] + TableTraits v1.0.0
  [bd369af6] + Tables v0.2.11
  [ea10d353] + WeakRefStrings v0.6.2
  [cc8bc4a8] + Widgets v0.6.2
  [efce3f68] + WoodburyMatrices v0.5.0
  [546b0b6d] + X11_jll v1.6.8+4
  [02c8fc9c] + XML2_jll v2.9.9+1
  [aed1982a] + XSLT_jll v1.1.33+0
  [84d6cd60] + Xorg_inputproto_jll v2.3.2+0
  [060dd47b] + Xorg_kbproto_jll v1.0.7+0
  [4f6342f7] + Xorg_libX11_jll v1.6.8+0
  [0c0b7dd1] + Xorg_libXau_jll v1.0.9+0
  [a3789734] + Xorg_libXdmcp_jll v1.1.3+0
  [1082639a] + Xorg_libXext_jll v1.3.4+0
  [ea2f1a96] + Xorg_libXrender_jll v0.9.10+0
  [14d82f49] + Xorg_libpthread_stubs_jll v0.1.0+0
  [c7cfdc94] + Xorg_libxcb_jll v1.13.0+0
  [21e99dc2] + Xorg_renderproto_jll v0.11.1+0
  [7c09cfe3] + Xorg_util_macros_jll v1.19.2+0
  [c2e9c405] + Xorg_xcb_proto_jll v1.13.0+0
  [d13bc2ba] + Xorg_xextproto_jll v7.3.0+0
  [46797783] + Xorg_xproto_jll v7.0.31+0
  [c5fb5394] + Xorg_xtrans_jll v1.4.0+0
  [83775a58] + Zlib_jll v1.2.11+7
  [b53b4c65] + libpng_jll v1.6.37+2
  [2a0f44e3] + Base64 
  [ade2ca70] + Dates 
  [8bb1440f] + DelimitedFiles 
  [8ba89e20] + Distributed 
  [9fa8497b] + Future 
  [b77e0a4c] + InteractiveUtils 
  [76f85450] + LibGit2 
  [8f399da3] + Libdl 
  [37e2e46d] + LinearAlgebra 
  [56ddb016] + Logging 
  [d6f4376e] + Markdown 
  [a63ad114] + Mmap 
  [44cfe95a] + Pkg 
  [de0858da] + Printf 
  [9abbd945] + Profile 
  [3fa0cd96] + REPL 
  [9a3f8284] + Random 
  [ea8e919c] + SHA 
  [9e88b42a] + Serialization 
  [1a1011a3] + SharedArrays 
  [6462fe0b] + Sockets 
  [2f01184e] + SparseArrays 
  [10745b16] + Statistics 
  [4607b0f0] + SuiteSparse 
  [8dfed614] + Test 
  [cf7118a7] + UUIDs 
  [4ec0a83e] + Unicode 
  Building GR ────→ `~/.julia/packages/GR/UUysL/deps/build.log`
  Updating `/tmp/jl_yUer0V/Project.toml`
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  Updating `/tmp/jl_yUer0V/Manifest.toml`
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  Building FFMPEG → `~/.julia/packages/FFMPEG/guN1x/deps/build.log`
  Updating `/tmp/jl_2JYrpP/Project.toml`
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  Building Plots ─→ `~/.julia/packages/Plots/WwFyB/deps/build.log`
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  Updating `/tmp/jl_wrvuSM/Manifest.toml`
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  Building FFTW ──→ `~/.julia/packages/FFTW/qqcBj/deps/build.log`
  Updating `/tmp/jl_evpqXL/Project.toml`
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  Updating `/tmp/jl_evpqXL/Manifest.toml`
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  Building Rmath ─→ `~/.julia/packages/Rmath/BoBag/deps/build.log`
  Updating `/tmp/jl_mNQbsN/Project.toml`
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  Updating `/tmp/jl_mNQbsN/Manifest.toml`
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   Testing StanMamba
  Updating `/tmp/jl_Kq9BH8/Project.toml`
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  Updating `/tmp/jl_Kq9BH8/Manifest.toml`
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Running sandbox
Status `/tmp/jl_Kq9BH8/Project.toml`
  [593b3428] CmdStan v5.6.0
  [e30172f5] Documenter v0.24.4
  [5424a776] Mamba v0.12.2
  [1f9da163] StanMamba v4.0.2
  [2913bbd2] StatsBase v0.32.0
  [10745b16] Statistics 
  [8dfed614] Test 
┌ Warning: Environment variable CMDSTAN_HOME not set. Use set_cmdstan_home!.
└ @ CmdStan ~/.julia/packages/CmdStan/QBXWv/src/CmdStan.jl:30
WARNING: Method definition (::Type{Distributions.MvNormal{T, Cov, Mean} where Mean<:(AbstractArray{T, 1} where T) where Cov<:(PDMats.AbstractPDMat{T} where T<:Real) where T<:Real})(AbstractArray{T<:Real, 1}, AbstractArray{U<:Real, 2}) where {T<:Real, U<:Real} in module Distributions at /home/pkgeval/.julia/packages/Distributions/uFI1h/src/multivariate/mvnormal.jl:206 overwritten in module Mamba at /home/pkgeval/.julia/packages/Mamba/Jotzr/src/distributions/constructors.jl:19.
  ** incremental compilation may be fatally broken for this module **

WARNING: Method definition (::Type{Distributions.MvNormal{T, Cov, Mean} where Mean<:(AbstractArray{T, 1} where T) where Cov<:(PDMats.AbstractPDMat{T} where T<:Real) where T<:Real})(AbstractArray{T<:Real, 1}, AbstractArray{U<:Real, 1}) where {T<:Real, U<:Real} in module Distributions at /home/pkgeval/.julia/packages/Distributions/uFI1h/src/multivariate/mvnormal.jl:212 overwritten in module Mamba at /home/pkgeval/.julia/packages/Mamba/Jotzr/src/distributions/constructors.jl:22.
  ** incremental compilation may be fatally broken for this module **

WARNING: Method definition (::Type{Distributions.MvNormal{T, Cov, Mean} where Mean<:(AbstractArray{T, 1} where T) where Cov<:(PDMats.AbstractPDMat{T} where T<:Real) where T<:Real})(AbstractArray{T<:Real, 1}, AbstractArray{U<:Real, 2}) where {T<:Real, U<:Real} in module Distributions at /home/pkgeval/.julia/packages/Distributions/uFI1h/src/multivariate/mvnormal.jl:206 overwritten in module Mamba at /home/pkgeval/.julia/packages/Mamba/Jotzr/src/distributions/constructors.jl:19.
  ** incremental compilation may be fatally broken for this module **

WARNING: Method definition (::Type{Distributions.MvNormal{T, Cov, Mean} where Mean<:(AbstractArray{T, 1} where T) where Cov<:(PDMats.AbstractPDMat{T} where T<:Real) where T<:Real})(AbstractArray{T<:Real, 1}, AbstractArray{U<:Real, 1}) where {T<:Real, U<:Real} in module Distributions at /home/pkgeval/.julia/packages/Distributions/uFI1h/src/multivariate/mvnormal.jl:212 overwritten in module Mamba at /home/pkgeval/.julia/packages/Mamba/Jotzr/src/distributions/constructors.jl:22.
  ** incremental compilation may be fatally broken for this module **

┌ Warning: Environment variable CMDSTAN_HOME not set. Use set_cmdstan_home!.
└ @ CmdStan ~/.julia/packages/CmdStan/QBXWv/src/CmdStan.jl:30
[ Info: Loading DataFrames support into Gadfly.jl
Running tests for StanMamba-j1.0-v4.0.2:



CMDSTAN_HOME not set or found.
Skipping all tests that depend on CmdStan!

   Testing StanMamba tests passed