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1.5.0-DEV-e0740fe5a6.log
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1.5.0-DEV-e0740fe5a6.log
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Julia Version 1.5.0-DEV.147
Commit e0740fe5a6 (2020-01-24 14:13 UTC)
Platform Info:
OS: Linux (x86_64-pc-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-8.0.1 (ORCJIT, skylake)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
Installed QHull ──────────────── v0.1.2
Installed RecipesBase ────────── v0.7.0
Installed OpenSpecFun_jll ────── v0.5.3+1
Installed FixedPointNumbers ──── v0.7.1
Installed CodecZlib ──────────── v0.6.0
Installed OrderedCollections ─── v1.1.0
Installed PyCall ─────────────── v1.91.2
Installed HTTP ───────────────── v0.8.8
Installed NaNMath ────────────── v0.3.3
Installed JSON ───────────────── v0.21.0
Installed CommonSubexpressions ─ v0.2.0
Installed DataStructures ─────── v0.17.9
Installed MacroTools ─────────── v0.5.3
Installed Polyhedra ──────────── v0.5.7
Installed Conda ──────────────── v1.3.0
Installed ForwardDiff ────────── v0.10.9
Installed DiffRules ──────────── v1.0.0
Installed IniFile ────────────── v0.5.0
Installed StaticArrays ───────── v0.12.1
Installed SpecialFunctions ───── v0.9.0
Installed BinaryProvider ─────── v0.5.8
Installed MbedTLS ────────────── v0.7.0
Installed Calculus ───────────── v0.5.1
Installed ParameterJuMP ──────── v0.1.2
Installed JuMP ───────────────── v0.20.1
Installed VersionParsing ─────── v1.2.0
Installed DiffResults ────────── v1.0.2
Installed Parsers ────────────── v0.3.10
Installed ColorTypes ─────────── v0.9.1
Installed GeometryTypes ──────── v0.7.7
Installed TranscodingStreams ─── v0.9.5
Installed CodecBzip2 ─────────── v0.6.0
Installed BenchmarkTools ─────── v0.4.3
Installed MutableArithmetics ─── v0.2.1
Installed JSONSchema ─────────── v0.2.0
Installed MathOptInterface ───── v0.9.9
Updating `~/.julia/environments/v1.5/Project.toml`
[a8468747] + QHull v0.1.2
Updating `~/.julia/environments/v1.5/Manifest.toml`
[6e4b80f9] + BenchmarkTools v0.4.3
[b99e7846] + BinaryProvider v0.5.8
[49dc2e85] + Calculus v0.5.1
[523fee87] + CodecBzip2 v0.6.0
[944b1d66] + CodecZlib v0.6.0
[3da002f7] + ColorTypes v0.9.1
[bbf7d656] + CommonSubexpressions v0.2.0
[8f4d0f93] + Conda v1.3.0
[864edb3b] + DataStructures v0.17.9
[163ba53b] + DiffResults v1.0.2
[b552c78f] + DiffRules v1.0.0
[53c48c17] + FixedPointNumbers v0.7.1
[f6369f11] + ForwardDiff v0.10.9
[4d00f742] + GeometryTypes v0.7.7
[cd3eb016] + HTTP v0.8.8
[83e8ac13] + IniFile v0.5.0
[682c06a0] + JSON v0.21.0
[7d188eb4] + JSONSchema v0.2.0
[4076af6c] + JuMP v0.20.1
[1914dd2f] + MacroTools v0.5.3
[b8f27783] + MathOptInterface v0.9.9
[739be429] + MbedTLS v0.7.0
[d8a4904e] + MutableArithmetics v0.2.1
[77ba4419] + NaNMath v0.3.3
[efe28fd5] + OpenSpecFun_jll v0.5.3+1
[bac558e1] + OrderedCollections v1.1.0
[774612a8] + ParameterJuMP v0.1.2
[69de0a69] + Parsers v0.3.10
[67491407] + Polyhedra v0.5.7
[438e738f] + PyCall v1.91.2
[a8468747] + QHull v0.1.2
[3cdcf5f2] + RecipesBase v0.7.0
[276daf66] + SpecialFunctions v0.9.0
[90137ffa] + StaticArrays v0.12.1
[3bb67fe8] + TranscodingStreams v0.9.5
[81def892] + VersionParsing v1.2.0
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8ba89e20] + Distributed
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building CodecZlib ─→ `~/.julia/packages/CodecZlib/5t9zO/deps/build.log`
Updating `/tmp/jl_yhvbST/Project.toml`
[no changes]
Updating `/tmp/jl_yhvbST/Manifest.toml`
[no changes]
Building Conda ─────→ `~/.julia/packages/Conda/kLXeC/deps/build.log`
Updating `/tmp/jl_d4Ujx8/Project.toml`
[no changes]
Updating `/tmp/jl_d4Ujx8/Manifest.toml`
[no changes]
Building PyCall ────→ `~/.julia/packages/PyCall/ttONZ/deps/build.log`
Updating `/tmp/jl_00dvZo/Project.toml`
[no changes]
Updating `/tmp/jl_00dvZo/Manifest.toml`
[no changes]
Building MbedTLS ───→ `~/.julia/packages/MbedTLS/a1JFn/deps/build.log`
Updating `/tmp/jl_V8r185/Project.toml`
[no changes]
Updating `/tmp/jl_V8r185/Manifest.toml`
[no changes]
Building CodecBzip2 → `~/.julia/packages/CodecBzip2/T5yr7/deps/build.log`
Updating `/tmp/jl_81QVg8/Project.toml`
[no changes]
Updating `/tmp/jl_81QVg8/Manifest.toml`
[no changes]
Testing QHull
Installed GLPK ────────── v0.12.1
Installed Combinatorics ─ v1.0.0
Installed Polynomials ─── v0.6.0
Updating `/tmp/jl_bygWou/Project.toml`
[861a8166] + Combinatorics v1.0.0
[60bf3e95] + GLPK v0.12.1
Updating `/tmp/jl_bygWou/Manifest.toml`
[861a8166] + Combinatorics v1.0.0
[60bf3e95] + GLPK v0.12.1
[f27b6e38] + Polynomials v0.6.0
Building GLPK → `~/.julia/packages/GLPK/HjJiX/deps/build.log`
Updating `/tmp/jl_zQQBo0/Project.toml`
[no changes]
Updating `/tmp/jl_zQQBo0/Manifest.toml`
[no changes]
Running sandbox
Status `/tmp/jl_bygWou/Project.toml`
[861a8166] Combinatorics v1.0.0
[60bf3e95] GLPK v0.12.1
[4d00f742] GeometryTypes v0.7.7
[4076af6c] JuMP v0.20.1
[67491407] Polyhedra v0.5.7
[438e738f] PyCall v1.91.2
[a8468747] QHull v0.1.2
[3cdcf5f2] RecipesBase v0.7.0
[90137ffa] StaticArrays v0.12.1
[8dfed614] Test
ERROR: LoadError: InitError: PyError (PyImport_ImportModule
The Python package scipy.spatial could not be found by pyimport. Usually this means
that you did not install scipy.spatial in the Python version being used by PyCall.
PyCall is currently configured to use the Python version at:
/usr/bin/python3
and you should use whatever mechanism you usually use (apt-get, pip, conda,
etcetera) to install the Python package containing the scipy.spatial module.
One alternative is to re-configure PyCall to use a different Python
version on your system: set ENV["PYTHON"] to the path/name of the python
executable you want to use, run Pkg.build("PyCall"), and re-launch Julia.
Another alternative is to configure PyCall to use a Julia-specific Python
distribution via the Conda.jl package (which installs a private Anaconda
Python distribution), which has the advantage that packages can be installed
and kept up-to-date via Julia. As explained in the PyCall documentation,
set ENV["PYTHON"]="", run Pkg.build("PyCall"), and re-launch Julia. Then,
To install the scipy.spatial module, you can use `pyimport_conda("scipy.spatial", PKG)`,
where PKG is the Anaconda package the contains the module scipy.spatial,
or alternatively you can use the Conda package directly (via
`using Conda` followed by `Conda.add` etcetera).
) <class 'ModuleNotFoundError'>
ModuleNotFoundError("No module named 'scipy'",)
Stacktrace:
[1] pyimport(::String) at /home/pkgeval/.julia/packages/PyCall/ttONZ/src/PyCall.jl:544
[2] pyimport_conda(::String, ::String, ::String) at /home/pkgeval/.julia/packages/PyCall/ttONZ/src/PyCall.jl:702
[3] pyimport_conda at /home/pkgeval/.julia/packages/PyCall/ttONZ/src/PyCall.jl:701 [inlined]
[4] __init__() at /home/pkgeval/.julia/packages/QHull/Nu3bw/src/QHull.jl:16
[5] _include_from_serialized(::String, ::Array{Any,1}) at ./loading.jl:697
[6] _require_from_serialized(::String) at ./loading.jl:748
[7] _require(::Base.PkgId) at ./loading.jl:1039
[8] require(::Base.PkgId) at ./loading.jl:927
[9] require(::Module, ::Symbol) at ./loading.jl:922
[10] include(::String) at ./client.jl:439
[11] top-level scope at none:6
during initialization of module QHull
in expression starting at /home/pkgeval/.julia/packages/QHull/Nu3bw/test/runtests.jl:2
err = ProcessFailedException(Base.Process[Process(`/opt/julia/bin/julia -Cnative -J/opt/julia/lib/julia/sys.so -g1 --code-coverage=none --color=no --compiled-modules=yes --check-bounds=yes --inline=yes --startup-file=no --track-allocation=none --eval 'append!(empty!(Base.DEPOT_PATH), ["/home/pkgeval/.julia", "/opt/julia/local/share/julia", "/opt/julia/share/julia", "/usr/local/share/julia"])
append!(empty!(Base.DL_LOAD_PATH), String[])
cd("/home/pkgeval/.julia/packages/QHull/Nu3bw/test")
append!(empty!(ARGS), String[])
include("/home/pkgeval/.julia/packages/QHull/Nu3bw/test/runtests.jl")
'`, ProcessExited(1))])
ERROR: Package QHull errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String,N} where N) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/Types.jl:54
[2] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/Operations.jl:1471
[3] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:313
[4] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:300
[5] #test#66 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:294 [inlined]
[6] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:294 [inlined]
[7] #test#65 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:293 [inlined]
[8] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:293 [inlined]
[9] test(::String; kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:292
[10] test(::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:292
[11] top-level scope at none:13