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1.5.0-DEV-e0740fe5a6.log
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Julia Version 1.5.0-DEV.147
Commit e0740fe5a6 (2020-01-24 14:13 UTC)
Platform Info:
OS: Linux (x86_64-pc-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-8.0.1 (ORCJIT, skylake)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
Installed Pio3d ────────────── v0.0.2
Installed VersionParsing ───── v1.2.0
Installed Conda ────────────── v1.3.0
Installed OrderedCollections ─ v1.1.0
Installed MacroTools ───────── v0.5.3
Installed DataStructures ───── v0.17.9
Installed PyCall ───────────── v1.91.2
Installed JSON ─────────────── v0.21.0
Installed Parsers ──────────── v0.3.10
Updating `~/.julia/environments/v1.5/Project.toml`
[276a7f50] + Pio3d v0.0.2
Updating `~/.julia/environments/v1.5/Manifest.toml`
[8f4d0f93] + Conda v1.3.0
[864edb3b] + DataStructures v0.17.9
[682c06a0] + JSON v0.21.0
[1914dd2f] + MacroTools v0.5.3
[bac558e1] + OrderedCollections v1.1.0
[69de0a69] + Parsers v0.3.10
[276a7f50] + Pio3d v0.0.2
[438e738f] + PyCall v1.91.2
[81def892] + VersionParsing v1.2.0
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8ba89e20] + Distributed
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building Conda ─→ `~/.julia/packages/Conda/kLXeC/deps/build.log`
Updating `/tmp/jl_Ero26T/Project.toml`
[no changes]
Updating `/tmp/jl_Ero26T/Manifest.toml`
[no changes]
Building PyCall → `~/.julia/packages/PyCall/ttONZ/deps/build.log`
Updating `/tmp/jl_fZNY1O/Project.toml`
[no changes]
Updating `/tmp/jl_fZNY1O/Manifest.toml`
[no changes]
Testing Pio3d
Updating `/tmp/jl_GMpnxj/Project.toml`
[no changes]
Updating `/tmp/jl_GMpnxj/Manifest.toml`
[no changes]
Running sandbox
Status `/tmp/jl_GMpnxj/Project.toml`
[276a7f50] Pio3d v0.0.2
[438e738f] PyCall v1.91.2
[8dfed614] Test
Pio3d.jl: Error During Test at /home/pkgeval/.julia/packages/Pio3d/qsitX/test/runtests.jl:6
Test threw exception
Expression: "nrn4" in Pio3d.get_labels()
PyError (PyImport_ImportModule
The Python package io3d.datasets could not be found by pyimport. Usually this means
that you did not install io3d.datasets in the Python version being used by PyCall.
PyCall is currently configured to use the Python version at:
/usr/bin/python3
and you should use whatever mechanism you usually use (apt-get, pip, conda,
etcetera) to install the Python package containing the io3d.datasets module.
One alternative is to re-configure PyCall to use a different Python
version on your system: set ENV["PYTHON"] to the path/name of the python
executable you want to use, run Pkg.build("PyCall"), and re-launch Julia.
Another alternative is to configure PyCall to use a Julia-specific Python
distribution via the Conda.jl package (which installs a private Anaconda
Python distribution), which has the advantage that packages can be installed
and kept up-to-date via Julia. As explained in the PyCall documentation,
set ENV["PYTHON"]="", run Pkg.build("PyCall"), and re-launch Julia. Then,
To install the io3d.datasets module, you can use `pyimport_conda("io3d.datasets", PKG)`,
where PKG is the Anaconda package the contains the module io3d.datasets,
or alternatively you can use the Conda package directly (via
`using Conda` followed by `Conda.add` etcetera).
) <class 'ModuleNotFoundError'>
ModuleNotFoundError("No module named 'io3d'",)
Stacktrace:
[1] pyimport(::String) at /home/pkgeval/.julia/packages/PyCall/ttONZ/src/PyCall.jl:544
[2] get_labels() at /home/pkgeval/.julia/packages/Pio3d/qsitX/src/Pio3d.jl:52
[3] top-level scope at /home/pkgeval/.julia/packages/Pio3d/qsitX/test/runtests.jl:6
[4] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1113
[5] top-level scope at /home/pkgeval/.julia/packages/Pio3d/qsitX/test/runtests.jl:6
Pio3d.jl: Error During Test at /home/pkgeval/.julia/packages/Pio3d/qsitX/test/runtests.jl:4
Got exception outside of a @test
PyError (PyImport_ImportModule
The Python package io3d.datasets could not be found by pyimport. Usually this means
that you did not install io3d.datasets in the Python version being used by PyCall.
PyCall is currently configured to use the Python version at:
/usr/bin/python3
and you should use whatever mechanism you usually use (apt-get, pip, conda,
etcetera) to install the Python package containing the io3d.datasets module.
One alternative is to re-configure PyCall to use a different Python
version on your system: set ENV["PYTHON"] to the path/name of the python
executable you want to use, run Pkg.build("PyCall"), and re-launch Julia.
Another alternative is to configure PyCall to use a Julia-specific Python
distribution via the Conda.jl package (which installs a private Anaconda
Python distribution), which has the advantage that packages can be installed
and kept up-to-date via Julia. As explained in the PyCall documentation,
set ENV["PYTHON"]="", run Pkg.build("PyCall"), and re-launch Julia. Then,
To install the io3d.datasets module, you can use `pyimport_conda("io3d.datasets", PKG)`,
where PKG is the Anaconda package the contains the module io3d.datasets,
or alternatively you can use the Conda package directly (via
`using Conda` followed by `Conda.add` etcetera).
) <class 'ModuleNotFoundError'>
ModuleNotFoundError("No module named 'io3d'",)
Stacktrace:
[1] pyimport(::String) at /home/pkgeval/.julia/packages/PyCall/ttONZ/src/PyCall.jl:544
[2] datasets_download(::String) at /home/pkgeval/.julia/packages/Pio3d/qsitX/src/Pio3d.jl:33
[3] top-level scope at /home/pkgeval/.julia/packages/Pio3d/qsitX/test/runtests.jl:7
[4] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1113
[5] top-level scope at /home/pkgeval/.julia/packages/Pio3d/qsitX/test/runtests.jl:6
[6] include(::String) at ./client.jl:439
[7] top-level scope at none:6
[8] eval(::Module, ::Any) at ./boot.jl:331
[9] exec_options(::Base.JLOptions) at ./client.jl:264
[10] _start() at ./client.jl:484
Test Summary: | Error Total
Pio3d.jl | 2 2
ERROR: LoadError: Some tests did not pass: 0 passed, 0 failed, 2 errored, 0 broken.
in expression starting at /home/pkgeval/.julia/packages/Pio3d/qsitX/test/runtests.jl:4
err = ProcessFailedException(Base.Process[Process(`/opt/julia/bin/julia -Cnative -J/opt/julia/lib/julia/sys.so -g1 --code-coverage=none --color=no --compiled-modules=yes --check-bounds=yes --inline=yes --startup-file=no --track-allocation=none --eval 'append!(empty!(Base.DEPOT_PATH), ["/home/pkgeval/.julia", "/opt/julia/local/share/julia", "/opt/julia/share/julia", "/usr/local/share/julia"])
append!(empty!(Base.DL_LOAD_PATH), String[])
cd("/home/pkgeval/.julia/packages/Pio3d/qsitX/test")
append!(empty!(ARGS), String[])
include("/home/pkgeval/.julia/packages/Pio3d/qsitX/test/runtests.jl")
'`, ProcessExited(1))])
ERROR: Package Pio3d errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String,N} where N) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/Types.jl:54
[2] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/Operations.jl:1471
[3] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:313
[4] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:300
[5] #test#66 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:294 [inlined]
[6] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:294 [inlined]
[7] #test#65 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:293 [inlined]
[8] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:293 [inlined]
[9] test(::String; kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:292
[10] test(::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:292
[11] top-level scope at none:13