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1.5.0-DEV-e0740fe5a6.log
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1.5.0-DEV-e0740fe5a6.log
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Julia Version 1.5.0-DEV.147
Commit e0740fe5a6 (2020-01-24 14:13 UTC)
Platform Info:
OS: Linux (x86_64-pc-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-8.0.1 (ORCJIT, skylake)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
Installed Missings ──────────────────── v0.4.3
Installed FFTW_jll ──────────────────── v3.3.9+3
Installed Requires ──────────────────── v1.0.0
Installed AbstractFFTs ──────────────── v0.5.0
Installed TableTraits ───────────────── v1.0.0
Installed IteratorInterfaceExtensions ─ v1.0.0
Installed NLreg ─────────────────────── v0.2.0
Installed StatsBase ─────────────────── v0.31.0
Installed OpenSpecFun_jll ───────────── v0.5.3+1
Installed OrderedCollections ────────── v1.1.0
Installed Tables ────────────────────── v0.2.11
Installed Reexport ──────────────────── v0.2.0
Installed CommonSubexpressions ──────── v0.2.0
Installed NNlib ─────────────────────── v0.6.4
Installed Arpack ────────────────────── v0.4.0
Installed Distributions ─────────────── v0.19.2
Installed FFTW ──────────────────────── v1.2.0
Installed IntelOpenMP_jll ───────────── v2018.0.3+0
Installed FillArrays ────────────────── v0.8.4
Installed NaNMath ───────────────────── v0.3.3
Installed MacroTools ────────────────── v0.5.3
Installed DataStructures ────────────── v0.17.9
Installed PDMats ────────────────────── v0.9.11
Installed StatsFuns ─────────────────── v0.9.3
Installed Zygote ────────────────────── v0.3.4
Installed DataValueInterfaces ───────── v1.0.0
Installed DataAPI ───────────────────── v1.1.0
Installed StaticArrays ──────────────── v0.12.1
Installed QuadGK ────────────────────── v2.3.1
Installed ForwardDiff ───────────────── v0.10.9
Installed DiffRules ─────────────────── v1.0.0
Installed SpecialFunctions ──────────── v0.9.0
Installed Arpack_jll ────────────────── v3.5.0+2
Installed IRTools ───────────────────── v0.2.3
Installed DiffResults ───────────────── v1.0.2
Installed Rmath ─────────────────────── v0.6.0
Installed OpenBLAS_jll ──────────────── v0.3.7+4
Installed BinaryProvider ────────────── v0.5.8
Installed ZygoteRules ───────────────── v0.1.0
Installed SortingAlgorithms ─────────── v0.3.1
Installed MKL_jll ───────────────────── v2019.0.117+2
Updating `~/.julia/environments/v1.5/Project.toml`
[6aa54777] + NLreg v0.2.0
Updating `~/.julia/environments/v1.5/Manifest.toml`
[621f4979] + AbstractFFTs v0.5.0
[7d9fca2a] + Arpack v0.4.0
[68821587] + Arpack_jll v3.5.0+2
[b99e7846] + BinaryProvider v0.5.8
[bbf7d656] + CommonSubexpressions v0.2.0
[9a962f9c] + DataAPI v1.1.0
[864edb3b] + DataStructures v0.17.9
[e2d170a0] + DataValueInterfaces v1.0.0
[163ba53b] + DiffResults v1.0.2
[b552c78f] + DiffRules v1.0.0
[31c24e10] + Distributions v0.19.2
[7a1cc6ca] + FFTW v1.2.0
[f5851436] + FFTW_jll v3.3.9+3
[1a297f60] + FillArrays v0.8.4
[f6369f11] + ForwardDiff v0.10.9
[7869d1d1] + IRTools v0.2.3
[1d5cc7b8] + IntelOpenMP_jll v2018.0.3+0
[82899510] + IteratorInterfaceExtensions v1.0.0
[856f044c] + MKL_jll v2019.0.117+2
[1914dd2f] + MacroTools v0.5.3
[e1d29d7a] + Missings v0.4.3
[6aa54777] + NLreg v0.2.0
[872c559c] + NNlib v0.6.4
[77ba4419] + NaNMath v0.3.3
[4536629a] + OpenBLAS_jll v0.3.7+4
[efe28fd5] + OpenSpecFun_jll v0.5.3+1
[bac558e1] + OrderedCollections v1.1.0
[90014a1f] + PDMats v0.9.11
[1fd47b50] + QuadGK v2.3.1
[189a3867] + Reexport v0.2.0
[ae029012] + Requires v1.0.0
[79098fc4] + Rmath v0.6.0
[a2af1166] + SortingAlgorithms v0.3.1
[276daf66] + SpecialFunctions v0.9.0
[90137ffa] + StaticArrays v0.12.1
[2913bbd2] + StatsBase v0.31.0
[4c63d2b9] + StatsFuns v0.9.3
[3783bdb8] + TableTraits v1.0.0
[bd369af6] + Tables v0.2.11
[e88e6eb3] + Zygote v0.3.4
[700de1a5] + ZygoteRules v0.1.0
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8ba89e20] + Distributed
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[4607b0f0] + SuiteSparse
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building NNlib → `~/.julia/packages/NNlib/3krvM/deps/build.log`
Updating `/tmp/jl_3Kxwly/Project.toml`
[no changes]
Updating `/tmp/jl_3Kxwly/Manifest.toml`
[no changes]
Building FFTW ─→ `~/.julia/packages/FFTW/qqcBj/deps/build.log`
Updating `/tmp/jl_QXbe0b/Project.toml`
[no changes]
Updating `/tmp/jl_QXbe0b/Manifest.toml`
[no changes]
Building Rmath → `~/.julia/packages/Rmath/BoBag/deps/build.log`
Updating `/tmp/jl_HUatwR/Project.toml`
[no changes]
Updating `/tmp/jl_HUatwR/Manifest.toml`
[no changes]
Testing NLreg
Installed PooledArrays ────── v0.5.3
Installed FilePathsBase ───── v0.7.0
Installed Compat ──────────── v3.2.0
Installed InvertedIndices ─── v1.0.0
Installed CategoricalArrays ─ v0.7.7
Installed JSON ────────────── v0.21.0
Installed DataFrames ──────── v0.20.0
Installed Parsers ─────────── v0.3.10
Installed WeakRefStrings ──── v0.6.2
Installed CSV ─────────────── v0.5.22
Updating `/tmp/jl_gv4a7O/Project.toml`
[336ed68f] + CSV v0.5.22
[a93c6f00] + DataFrames v0.20.0
Updating `/tmp/jl_gv4a7O/Manifest.toml`
[336ed68f] + CSV v0.5.22
[324d7699] + CategoricalArrays v0.7.7
[34da2185] + Compat v3.2.0
[a93c6f00] + DataFrames v0.20.0
[48062228] + FilePathsBase v0.7.0
[41ab1584] + InvertedIndices v1.0.0
[682c06a0] + JSON v0.21.0
[69de0a69] + Parsers v0.3.10
[2dfb63ee] + PooledArrays v0.5.3
[ea10d353] + WeakRefStrings v0.6.2
[8bb1440f] + DelimitedFiles
[9fa8497b] + Future
[a63ad114] + Mmap
[1a1011a3] + SharedArrays
Running sandbox
Status `/tmp/jl_gv4a7O/Project.toml`
[336ed68f] CSV v0.5.22
[a93c6f00] DataFrames v0.20.0
[6aa54777] NLreg v0.2.0
[2913bbd2] StatsBase v0.31.0
[10745b16] Statistics
[8dfed614] Test
WARNING: could not import Compiler.just_construct_ssa into Wrap
┌ Warning: Deprecated syntax `(;)` at /home/pkgeval/.julia/packages/Zygote/bdE6T/src/lib/grad.jl:3.
│ Use `begin end` instead.
└ @ ~/.julia/packages/Zygote/bdE6T/src/lib/grad.jl:3
Test Summary: | Pass Total
orange | 1 1
Theophylline: Error During Test at /home/pkgeval/.julia/packages/NLreg/9aS23/test/runtests.jl:13
Got exception outside of a @test
Non-differentiable function Core._apply_iterate
Stacktrace:
[1] error(::String) at ./error.jl:33
[2] macro expansion at /home/pkgeval/.julia/packages/Zygote/bdE6T/src/compiler/interface2.jl:0 [inlined]
[3] (::typeof(∂(_apply_iterate)))(::Float64) at /home/pkgeval/.julia/packages/Zygote/bdE6T/src/compiler/interface2.jl:19
[4] * at ./operators.jl:529 [inlined]
[5] (::typeof(∂(*)))(::Float64) at /home/pkgeval/.julia/packages/Zygote/bdE6T/src/compiler/interface2.jl:0
[6] sdOral1Clog at /home/pkgeval/.julia/packages/NLreg/9aS23/test/runtests.jl:20 [inlined]
[7] (::typeof(∂(sdOral1Clog)))(::Float64) at /home/pkgeval/.julia/packages/Zygote/bdE6T/src/compiler/interface2.jl:0
[8] #1 at /home/pkgeval/.julia/packages/NLreg/9aS23/src/nlreg.jl:48 [inlined]
[9] (::typeof(∂(λ)))(::Float64) at /home/pkgeval/.julia/packages/Zygote/bdE6T/src/compiler/interface2.jl:0
[10] (::Zygote.var"#30#31"{typeof(∂(λ))})(::Float64) at /home/pkgeval/.julia/packages/Zygote/bdE6T/src/compiler/interface.jl:38
[11] gradient(::Function, ::NamedTuple{(:lk, :lka, :lV),Tuple{Float64,Float64,Float64}}) at /home/pkgeval/.julia/packages/Zygote/bdE6T/src/compiler/interface.jl:47
[12] updatech!(::NLregModel{Float64}) at /home/pkgeval/.julia/packages/NLreg/9aS23/src/nlreg.jl:48
[13] fit!(::NLregModel{Float64}; maxiter::Int64, tol::Float64, minfac::Float64, verbose::Bool) at /home/pkgeval/.julia/packages/NLreg/9aS23/src/nlreg.jl:66
[14] fit(::Type{NLregModel}, ::SubDataFrame{DataFrame,DataFrames.Index,Array{Int64,1}}, ::Symbol, ::Function, ::NamedTuple{(:lk, :lka, :lV),Tuple{Float64,Float64,Float64}}; kw::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /home/pkgeval/.julia/packages/NLreg/9aS23/src/nlreg.jl:108
[15] fit(::Type{NLregModel}, ::SubDataFrame{DataFrame,DataFrames.Index,Array{Int64,1}}, ::Symbol, ::Function, ::NamedTuple{(:lk, :lka, :lV),Tuple{Float64,Float64,Float64}}) at /home/pkgeval/.julia/packages/NLreg/9aS23/src/nlreg.jl:108
[16] top-level scope at /home/pkgeval/.julia/packages/NLreg/9aS23/test/runtests.jl:22
[17] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1113
[18] top-level scope at /home/pkgeval/.julia/packages/NLreg/9aS23/test/runtests.jl:14
[19] include(::String) at ./client.jl:439
[20] top-level scope at none:6
[21] eval(::Module, ::Any) at ./boot.jl:331
[22] exec_options(::Base.JLOptions) at ./client.jl:264
[23] _start() at ./client.jl:484
Test Summary: | Error Total
Theophylline | 1 1
ERROR: LoadError: Some tests did not pass: 0 passed, 0 failed, 1 errored, 0 broken.
in expression starting at /home/pkgeval/.julia/packages/NLreg/9aS23/test/runtests.jl:13
err = ProcessFailedException(Base.Process[Process(`/opt/julia/bin/julia -Cnative -J/opt/julia/lib/julia/sys.so -g1 --code-coverage=none --color=no --compiled-modules=yes --check-bounds=yes --inline=yes --startup-file=no --track-allocation=none --eval 'append!(empty!(Base.DEPOT_PATH), ["/home/pkgeval/.julia", "/opt/julia/local/share/julia", "/opt/julia/share/julia", "/usr/local/share/julia"])
append!(empty!(Base.DL_LOAD_PATH), String[])
cd("/home/pkgeval/.julia/packages/NLreg/9aS23/test")
append!(empty!(ARGS), String[])
include("/home/pkgeval/.julia/packages/NLreg/9aS23/test/runtests.jl")
'`, ProcessExited(1))])
ERROR: Package NLreg errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String,N} where N) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/Types.jl:54
[2] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/Operations.jl:1471
[3] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:313
[4] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:300
[5] #test#66 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:294 [inlined]
[6] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:294 [inlined]
[7] #test#65 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:293 [inlined]
[8] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:293 [inlined]
[9] test(::String; kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:292
[10] test(::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:292
[11] top-level scope at none:13