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1.5.0-DEV-e0740fe5a6.log
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Julia Version 1.5.0-DEV.147
Commit e0740fe5a6 (2020-01-24 14:13 UTC)
Platform Info:
OS: Linux (x86_64-pc-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-8.0.1 (ORCJIT, skylake)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
Installed FFTW_jll ────────────────── v3.3.9+3
Installed ProgressMeter ───────────── v1.2.0
Installed PaddedViews ─────────────── v0.5.1
Installed AbstractFFTs ────────────── v0.5.0
Installed ComputationalResources ──── v0.3.0
Installed Colors ──────────────────── v0.9.6
Installed ImageFiltering ──────────── v0.6.9
Installed CMakeWrapper ────────────── v0.2.3
Installed FixedPointNumbers ───────── v0.6.1
Installed IterTools ───────────────── v1.3.0
Installed Requires ────────────────── v1.0.0
Installed FFTViews ────────────────── v0.3.1
Installed ImageTransformations ────── v0.8.3
Installed Wavelets ────────────────── v0.9.0
Installed Missings ────────────────── v0.4.3
Installed Unitful ─────────────────── v0.17.0
Installed Compat ──────────────────── v2.2.0
Installed URIParser ───────────────── v0.4.0
Installed StatsBase ───────────────── v0.32.0
Installed OrderedCollections ──────── v1.1.0
Installed MRIReco ─────────────────── v0.2.1
Installed IterativeSolvers ────────── v0.8.1
Installed RecipesBase ─────────────── v0.7.0
Installed SimpleTraits ────────────── v0.9.1
Installed CMake ───────────────────── v1.1.2
Installed LinearOperators ─────────── v1.0.1
Installed Distributions ───────────── v0.21.12
Installed CoordinateTransformations ─ v0.5.0
Installed NFFT ────────────────────── v0.5.0
Installed Arpack ──────────────────── v0.4.0
Installed LightXML ────────────────── v0.8.1
Installed FastClosures ────────────── v0.3.2
Installed RangeArrays ─────────────── v0.3.2
Installed Reexport ────────────────── v0.2.0
Installed ImageMagick ─────────────── v0.7.5
Installed IntervalSets ────────────── v0.3.2
Installed Images ──────────────────── v0.18.0
Installed RegularizedLeastSquares ─── v0.5.1
Installed IntelOpenMP_jll ─────────── v2018.0.3+0
Installed ImageAxes ───────────────── v0.6.2
Installed Ratios ──────────────────── v0.3.1
Installed Graphics ────────────────── v0.4.0
Installed ImageDistances ──────────── v0.2.7
Installed FFTW ────────────────────── v1.2.0
Installed IdentityRanges ──────────── v0.3.1
Installed HDF5 ────────────────────── v0.12.5
Installed Distances ───────────────── v0.8.2
Installed ImageMetadata ───────────── v0.7.2
Installed FillArrays ──────────────── v0.8.4
Installed OffsetArrays ────────────── v0.11.4
Installed NaNMath ─────────────────── v0.3.3
Installed MacroTools ──────────────── v0.5.3
Installed TiledIteration ──────────── v0.2.4
Installed PDMats ──────────────────── v0.9.11
Installed DataStructures ──────────── v0.17.9
Installed ColorVectorSpace ────────── v0.7.1
Installed DataAPI ─────────────────── v1.1.0
Installed StaticArrays ────────────── v0.12.1
Installed StatsFuns ───────────────── v0.9.3
Installed GZip ────────────────────── v0.5.1
Installed QuadGK ──────────────────── v2.3.1
Installed MappedArrays ────────────── v0.2.2
Installed WoodburyMatrices ────────── v0.5.0
Installed Arpack_jll ──────────────── v3.5.0+2
Installed SpecialFunctions ────────── v0.8.0
Installed BinaryProvider ──────────── v0.5.8
Installed Rmath ───────────────────── v0.6.0
Installed BinDeps ─────────────────── v1.0.0
Installed ImageUtils ──────────────── v0.2.0
Installed AxisArrays ──────────────── v0.3.3
Installed AxisAlgorithms ──────────── v1.0.0
Installed OpenBLAS_jll ────────────── v0.3.7+4
Installed SortingAlgorithms ───────── v0.3.1
Installed FileIO ──────────────────── v1.2.1
Installed Polynomials ─────────────── v0.6.0
Installed ColorTypes ──────────────── v0.8.1
Installed Interpolations ──────────── v0.12.7
Installed ImageMorphology ─────────── v0.2.5
Installed Rotations ───────────────── v0.13.0
Installed CatIndices ──────────────── v0.2.1
Installed CustomUnitRanges ────────── v1.0.0
Installed SparsityOperators ───────── v0.1.5
Installed Parameters ──────────────── v0.12.0
Installed ImageCore ───────────────── v0.8.11
Installed DSP ─────────────────────── v0.6.3
Installed TimerOutputs ────────────── v0.5.3
Installed IndirectArrays ──────────── v0.5.1
Installed Blosc ───────────────────── v0.5.1
Installed MKL_jll ─────────────────── v2019.0.117+2
Installed ImageShow ───────────────── v0.2.3
Installed NIfTI ───────────────────── v0.4.0
Updating `~/.julia/environments/v1.5/Project.toml`
[bdf86e05] + MRIReco v0.2.1
Updating `~/.julia/environments/v1.5/Manifest.toml`
[621f4979] + AbstractFFTs v0.5.0
[7d9fca2a] + Arpack v0.4.0
[68821587] + Arpack_jll v3.5.0+2
[13072b0f] + AxisAlgorithms v1.0.0
[39de3d68] + AxisArrays v0.3.3
[9e28174c] + BinDeps v1.0.0
[b99e7846] + BinaryProvider v0.5.8
[a74b3585] + Blosc v0.5.1
[631607c0] + CMake v1.1.2
[d5fb7624] + CMakeWrapper v0.2.3
[aafaddc9] + CatIndices v0.2.1
[3da002f7] + ColorTypes v0.8.1
[c3611d14] + ColorVectorSpace v0.7.1
[5ae59095] + Colors v0.9.6
[34da2185] + Compat v2.2.0
[ed09eef8] + ComputationalResources v0.3.0
[150eb455] + CoordinateTransformations v0.5.0
[dc8bdbbb] + CustomUnitRanges v1.0.0
[717857b8] + DSP v0.6.3
[9a962f9c] + DataAPI v1.1.0
[864edb3b] + DataStructures v0.17.9
[b4f34e82] + Distances v0.8.2
[31c24e10] + Distributions v0.21.12
[4f61f5a4] + FFTViews v0.3.1
[7a1cc6ca] + FFTW v1.2.0
[f5851436] + FFTW_jll v3.3.9+3
[9aa1b823] + FastClosures v0.3.2
[5789e2e9] + FileIO v1.2.1
[1a297f60] + FillArrays v0.8.4
[53c48c17] + FixedPointNumbers v0.6.1
[92fee26a] + GZip v0.5.1
[a2bd30eb] + Graphics v0.4.0
[f67ccb44] + HDF5 v0.12.5
[bbac6d45] + IdentityRanges v0.3.1
[2803e5a7] + ImageAxes v0.6.2
[a09fc81d] + ImageCore v0.8.11
[51556ac3] + ImageDistances v0.2.7
[6a3955dd] + ImageFiltering v0.6.9
[6218d12a] + ImageMagick v0.7.5
[bc367c6b] + ImageMetadata v0.7.2
[787d08f9] + ImageMorphology v0.2.5
[4e3cecfd] + ImageShow v0.2.3
[02fcd773] + ImageTransformations v0.8.3
[8ad4436d] + ImageUtils v0.2.0
[916415d5] + Images v0.18.0
[9b13fd28] + IndirectArrays v0.5.1
[1d5cc7b8] + IntelOpenMP_jll v2018.0.3+0
[a98d9a8b] + Interpolations v0.12.7
[8197267c] + IntervalSets v0.3.2
[c8e1da08] + IterTools v1.3.0
[42fd0dbc] + IterativeSolvers v0.8.1
[9c8b4983] + LightXML v0.8.1
[5c8ed15e] + LinearOperators v1.0.1
[856f044c] + MKL_jll v2019.0.117+2
[bdf86e05] + MRIReco v0.2.1
[1914dd2f] + MacroTools v0.5.3
[dbb5928d] + MappedArrays v0.2.2
[e1d29d7a] + Missings v0.4.3
[efe261a4] + NFFT v0.5.0
[a3a9e032] + NIfTI v0.4.0
[77ba4419] + NaNMath v0.3.3
[6fe1bfb0] + OffsetArrays v0.11.4
[4536629a] + OpenBLAS_jll v0.3.7+4
[bac558e1] + OrderedCollections v1.1.0
[90014a1f] + PDMats v0.9.11
[5432bcbf] + PaddedViews v0.5.1
[d96e819e] + Parameters v0.12.0
[f27b6e38] + Polynomials v0.6.0
[92933f4c] + ProgressMeter v1.2.0
[1fd47b50] + QuadGK v2.3.1
[b3c3ace0] + RangeArrays v0.3.2
[c84ed2f1] + Ratios v0.3.1
[3cdcf5f2] + RecipesBase v0.7.0
[189a3867] + Reexport v0.2.0
[1e9c538a] + RegularizedLeastSquares v0.5.1
[ae029012] + Requires v1.0.0
[79098fc4] + Rmath v0.6.0
[6038ab10] + Rotations v0.13.0
[699a6c99] + SimpleTraits v0.9.1
[a2af1166] + SortingAlgorithms v0.3.1
[a5ff1dd3] + SparsityOperators v0.1.5
[276daf66] + SpecialFunctions v0.8.0
[90137ffa] + StaticArrays v0.12.1
[2913bbd2] + StatsBase v0.32.0
[4c63d2b9] + StatsFuns v0.9.3
[06e1c1a7] + TiledIteration v0.2.4
[a759f4b9] + TimerOutputs v0.5.3
[30578b45] + URIParser v0.4.0
[1986cc42] + Unitful v0.17.0
[29a6e085] + Wavelets v0.9.0
[efce3f68] + WoodburyMatrices v0.5.0
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[4607b0f0] + SuiteSparse
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building CMake ───────────→ `~/.julia/packages/CMake/nSK2r/deps/build.log`
Updating `/tmp/jl_VW6Pq6/Project.toml`
[no changes]
Updating `/tmp/jl_VW6Pq6/Manifest.toml`
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Building LightXML ────────→ `~/.julia/packages/LightXML/W8FVT/deps/build.log`
Updating `/tmp/jl_RRhT5F/Project.toml`
[no changes]
Updating `/tmp/jl_RRhT5F/Manifest.toml`
[no changes]
Building ImageMagick ─────→ `~/.julia/packages/ImageMagick/vMfoS/deps/build.log`
Updating `/tmp/jl_3JyV4O/Project.toml`
[no changes]
Updating `/tmp/jl_3JyV4O/Manifest.toml`
[no changes]
Building Blosc ───────────→ `~/.julia/packages/Blosc/lzFr0/deps/build.log`
Updating `/tmp/jl_jSMbps/Project.toml`
[no changes]
Updating `/tmp/jl_jSMbps/Manifest.toml`
[no changes]
Building HDF5 ────────────→ `~/.julia/packages/HDF5/Zh9on/deps/build.log`
Updating `/tmp/jl_Xp5mnO/Project.toml`
[no changes]
Updating `/tmp/jl_Xp5mnO/Manifest.toml`
[no changes]
Building FFTW ────────────→ `~/.julia/packages/FFTW/qqcBj/deps/build.log`
Updating `/tmp/jl_dsIRKw/Project.toml`
[no changes]
Updating `/tmp/jl_dsIRKw/Manifest.toml`
[no changes]
Building SpecialFunctions → `~/.julia/packages/SpecialFunctions/ne2iw/deps/build.log`
Updating `/tmp/jl_RerhQg/Project.toml`
[no changes]
Updating `/tmp/jl_RerhQg/Manifest.toml`
[no changes]
Building Rmath ───────────→ `~/.julia/packages/Rmath/BoBag/deps/build.log`
Updating `/tmp/jl_TNE7Me/Project.toml`
[no changes]
Updating `/tmp/jl_TNE7Me/Manifest.toml`
[no changes]
Testing MRIReco
Installed IniFile ─ v0.5.0
Installed HTTP ──── v0.8.8
Installed MbedTLS ─ v0.7.0
Updating `/tmp/jl_v9j1Ly/Project.toml`
[cd3eb016] + HTTP v0.8.8
Updating `/tmp/jl_v9j1Ly/Manifest.toml`
[cd3eb016] + HTTP v0.8.8
[83e8ac13] + IniFile v0.5.0
[739be429] + MbedTLS v0.7.0
Building MbedTLS → `~/.julia/packages/MbedTLS/a1JFn/deps/build.log`
Updating `/tmp/jl_5XUq1W/Project.toml`
[no changes]
Updating `/tmp/jl_5XUq1W/Manifest.toml`
[no changes]
Running sandbox
Status `/tmp/jl_v9j1Ly/Project.toml`
[31c24e10] Distributions v0.21.12
[7a1cc6ca] FFTW v1.2.0
[5789e2e9] FileIO v1.2.1
[a2bd30eb] Graphics v0.4.0
[f67ccb44] HDF5 v0.12.5
[cd3eb016] HTTP v0.8.8
[8ad4436d] ImageUtils v0.2.0
[9c8b4983] LightXML v0.8.1
[5c8ed15e] LinearOperators v1.0.1
[bdf86e05] MRIReco v0.2.1
[efe261a4] NFFT v0.5.0
[a3a9e032] NIfTI v0.4.0
[92933f4c] ProgressMeter v1.2.0
[189a3867] Reexport v0.2.0
[1e9c538a] RegularizedLeastSquares v0.5.1
[a5ff1dd3] SparsityOperators v0.1.5
[2913bbd2] StatsBase v0.32.0
[1986cc42] Unitful v0.17.0
[29a6e085] Wavelets v0.9.0
[8ba89e20] Distributed
[37e2e46d] LinearAlgebra
[9a3f8284] Random
[8dfed614] Test
Test Summary: | Pass Total
Trajectories | 9 9
IO: Error During Test at /home/pkgeval/.julia/packages/MRIReco/v5PGv/test/testIO.jl:2
Got exception outside of a @test
MethodError: no method matching uconvert(::Unitful.FreeUnits{(m,),𝐋,nothing}, ::Base.TwicePrecision{Quantity{Float64,𝐋,Unitful.FreeUnits{(mm,),𝐋,nothing}}})
Closest candidates are:
uconvert(::Unitful.Units, !Matched::Quantity{#s56,D,U} where U where D where #s56<:Level) at /home/pkgeval/.julia/packages/Unitful/ytsW0/src/logarithm.jl:130
uconvert(::Unitful.Units, !Matched::Quantity{#s56,D,U} where U where D where #s56<:Gain) at /home/pkgeval/.julia/packages/Unitful/ytsW0/src/logarithm.jl:131
uconvert(::Unitful.Units, !Matched::Quantity{T,D,U}) where {T, D, U} at /home/pkgeval/.julia/packages/Unitful/ytsW0/src/conversion.jl:69
...
Stacktrace:
[1] _broadcast_getindex_evalf at ./broadcast.jl:631 [inlined]
[2] _broadcast_getindex at ./broadcast.jl:604 [inlined]
[3] _getindex at ./broadcast.jl:628 [inlined]
[4] _broadcast_getindex at ./broadcast.jl:603 [inlined]
[5] (::Base.Broadcast.var"#19#20"{Base.Broadcast.Broadcasted{Base.Broadcast.Style{Tuple},Nothing,typeof(ustrip),Tuple{Base.Broadcast.Broadcasted{Base.Broadcast.Style{Tuple},Nothing,typeof(uconvert),Tuple{Base.RefValue{Unitful.FreeUnits{(m,),𝐋,nothing}},Tuple{Base.TwicePrecision{Quantity{Float64,𝐋,Unitful.FreeUnits{(mm,),𝐋,nothing}}},Base.TwicePrecision{Quantity{Float64,𝐋,Unitful.FreeUnits{(mm,),𝐋,nothing}}},Base.TwicePrecision{Quantity{Float64,𝐋,Unitful.FreeUnits{(mm,),𝐋,nothing}}}}}}}}})(::Int64) at ./broadcast.jl:1024
[6] ntuple at ./ntuple.jl:43 [inlined]
[7] copy(::Base.Broadcast.Broadcasted{Base.Broadcast.Style{Tuple},Nothing,typeof(ustrip),Tuple{Base.Broadcast.Broadcasted{Base.Broadcast.Style{Tuple},Nothing,typeof(uconvert),Tuple{Base.RefValue{Unitful.FreeUnits{(m,),𝐋,nothing}},Tuple{Base.TwicePrecision{Quantity{Float64,𝐋,Unitful.FreeUnits{(mm,),𝐋,nothing}}},Base.TwicePrecision{Quantity{Float64,𝐋,Unitful.FreeUnits{(mm,),𝐋,nothing}}},Base.TwicePrecision{Quantity{Float64,𝐋,Unitful.FreeUnits{(mm,),𝐋,nothing}}}}}}}}) at ./broadcast.jl:1024
[8] materialize at ./broadcast.jl:820 [inlined]
[9] saveImage(::String, ::AxisArray{Complex{Float64},5,Array{Complex{Float64},5},Tuple{Axis{:x,StepRangeLen{Quantity{Float64,𝐋,Unitful.FreeUnits{(mm,),𝐋,nothing}},Base.TwicePrecision{Quantity{Float64,𝐋,Unitful.FreeUnits{(mm,),𝐋,nothing}}},Base.TwicePrecision{Quantity{Float64,𝐋,Unitful.FreeUnits{(mm,),𝐋,nothing}}}}},Axis{:y,StepRangeLen{Quantity{Float64,𝐋,Unitful.FreeUnits{(mm,),𝐋,nothing}},Base.TwicePrecision{Quantity{Float64,𝐋,Unitful.FreeUnits{(mm,),𝐋,nothing}}},Base.TwicePrecision{Quantity{Float64,𝐋,Unitful.FreeUnits{(mm,),𝐋,nothing}}}}},Axis{:z,StepRangeLen{Quantity{Float64,𝐋,Unitful.FreeUnits{(mm,),𝐋,nothing}},Base.TwicePrecision{Quantity{Float64,𝐋,Unitful.FreeUnits{(mm,),𝐋,nothing}}},Base.TwicePrecision{Quantity{Float64,𝐋,Unitful.FreeUnits{(mm,),𝐋,nothing}}}}},Axis{:echos,UnitRange{Int64}},Axis{:coils,UnitRange{Int64}}}}, ::Bool) at /home/pkgeval/.julia/packages/MRIReco/v5PGv/src/IO/Nifti.jl:10
[10] top-level scope at /home/pkgeval/.julia/packages/MRIReco/v5PGv/test/testIO.jl:26
[11] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1113
[12] top-level scope at /home/pkgeval/.julia/packages/MRIReco/v5PGv/test/testIO.jl:4
[13] include(::String) at ./client.jl:439
[14] top-level scope at /home/pkgeval/.julia/packages/MRIReco/v5PGv/test/runtests.jl:10
[15] include(::String) at ./client.jl:439
[16] top-level scope at none:6
[17] eval(::Module, ::Any) at ./boot.jl:331
[18] exec_options(::Base.JLOptions) at ./client.jl:264
[19] _start() at ./client.jl:484
Test Summary: | Error Total
IO | 1 1
ERROR: LoadError: LoadError: Some tests did not pass: 0 passed, 0 failed, 1 errored, 0 broken.
in expression starting at /home/pkgeval/.julia/packages/MRIReco/v5PGv/test/testIO.jl:2
in expression starting at /home/pkgeval/.julia/packages/MRIReco/v5PGv/test/runtests.jl:10
err = ProcessFailedException(Base.Process[Process(`/opt/julia/bin/julia -Cnative -J/opt/julia/lib/julia/sys.so -g1 --code-coverage=none --color=no --compiled-modules=yes --check-bounds=yes --inline=yes --startup-file=no --track-allocation=none --eval 'append!(empty!(Base.DEPOT_PATH), ["/home/pkgeval/.julia", "/opt/julia/local/share/julia", "/opt/julia/share/julia", "/usr/local/share/julia"])
append!(empty!(Base.DL_LOAD_PATH), String[])
cd("/home/pkgeval/.julia/packages/MRIReco/v5PGv/test")
append!(empty!(ARGS), String[])
include("/home/pkgeval/.julia/packages/MRIReco/v5PGv/test/runtests.jl")
'`, ProcessExited(1))])
ERROR: Package MRIReco errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String,N} where N) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/Types.jl:54
[2] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/Operations.jl:1471
[3] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:313
[4] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:300
[5] #test#66 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:294 [inlined]
[6] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:294 [inlined]
[7] #test#65 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:293 [inlined]
[8] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:293 [inlined]
[9] test(::String; kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:292
[10] test(::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:292
[11] top-level scope at none:13