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1.5.0-DEV-e0740fe5a6.log
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1.5.0-DEV-e0740fe5a6.log
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Julia Version 1.5.0-DEV.147
Commit e0740fe5a6 (2020-01-24 14:13 UTC)
Platform Info:
OS: Linux (x86_64-pc-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-8.0.1 (ORCJIT, skylake)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
Installed Formatting ─────────── v0.4.1
Installed ProgressMeter ──────── v1.2.0
Installed Combinatorics ──────── v1.0.0
Installed Requires ───────────── v1.0.0
Installed ArgParse ───────────── v0.6.2
Installed PairwiseListMatrices ─ v0.7.0
Installed StatsBase ──────────── v0.32.0
Installed Compat ─────────────── v2.2.0
Installed NearestNeighbors ───── v0.4.4
Installed CodecZlib ──────────── v0.6.0
Installed Missings ───────────── v0.4.3
Installed RecipesBase ────────── v0.7.0
Installed OrderedCollections ─── v1.1.0
Installed HTTP ───────────────── v0.8.8
Installed LightXML ───────────── v0.8.1
Installed InvertedIndices ────── v1.0.0
Installed TextWrap ───────────── v0.3.0
Installed Distances ──────────── v0.8.2
Installed DataAPI ────────────── v1.1.0
Installed DataStructures ─────── v0.17.9
Installed IniFile ────────────── v0.5.0
Installed AutoHashEquals ─────── v0.2.0
Installed GZip ───────────────── v0.5.1
Installed MbedTLS ────────────── v0.7.0
Installed FastaIO ────────────── v0.5.0
Installed StaticArrays ───────── v0.12.1
Installed BinaryProvider ─────── v0.5.8
Installed MIToS ──────────────── v2.4.0
Installed Polynomials ────────── v0.6.0
Installed SortingAlgorithms ──── v0.3.1
Installed TranscodingStreams ─── v0.9.5
Installed NamedArrays ────────── v0.9.3
Installed Clustering ─────────── v0.13.3
Updating `~/.julia/environments/v1.5/Project.toml`
[51bafb47] + MIToS v2.4.0
Updating `~/.julia/environments/v1.5/Manifest.toml`
[c7e460c6] + ArgParse v0.6.2
[15f4f7f2] + AutoHashEquals v0.2.0
[b99e7846] + BinaryProvider v0.5.8
[aaaa29a8] + Clustering v0.13.3
[944b1d66] + CodecZlib v0.6.0
[861a8166] + Combinatorics v1.0.0
[34da2185] + Compat v2.2.0
[9a962f9c] + DataAPI v1.1.0
[864edb3b] + DataStructures v0.17.9
[b4f34e82] + Distances v0.8.2
[a0c94c4b] + FastaIO v0.5.0
[59287772] + Formatting v0.4.1
[92fee26a] + GZip v0.5.1
[cd3eb016] + HTTP v0.8.8
[83e8ac13] + IniFile v0.5.0
[41ab1584] + InvertedIndices v1.0.0
[9c8b4983] + LightXML v0.8.1
[51bafb47] + MIToS v2.4.0
[739be429] + MbedTLS v0.7.0
[e1d29d7a] + Missings v0.4.3
[86f7a689] + NamedArrays v0.9.3
[b8a86587] + NearestNeighbors v0.4.4
[bac558e1] + OrderedCollections v1.1.0
[f9da4da7] + PairwiseListMatrices v0.7.0
[f27b6e38] + Polynomials v0.6.0
[92933f4c] + ProgressMeter v1.2.0
[3cdcf5f2] + RecipesBase v0.7.0
[ae029012] + Requires v1.0.0
[a2af1166] + SortingAlgorithms v0.3.1
[90137ffa] + StaticArrays v0.12.1
[2913bbd2] + StatsBase v0.32.0
[b718987f] + TextWrap v0.3.0
[3bb67fe8] + TranscodingStreams v0.9.5
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building CodecZlib → `~/.julia/packages/CodecZlib/5t9zO/deps/build.log`
Updating `/tmp/jl_OarJ3J/Project.toml`
[no changes]
Updating `/tmp/jl_OarJ3J/Manifest.toml`
[no changes]
Building LightXML ─→ `~/.julia/packages/LightXML/W8FVT/deps/build.log`
Updating `/tmp/jl_gg6l18/Project.toml`
[no changes]
Updating `/tmp/jl_gg6l18/Manifest.toml`
[no changes]
Building MbedTLS ──→ `~/.julia/packages/MbedTLS/a1JFn/deps/build.log`
Updating `/tmp/jl_8AdGGP/Project.toml`
[no changes]
Updating `/tmp/jl_8AdGGP/Manifest.toml`
[no changes]
Testing MIToS
┌ Error: Pkg.Resolve.ResolverError("Unsatisfiable requirements detected for package ROCAnalysis [f535d66d]:\n ROCAnalysis [f535d66d] log:\n ├─possible versions are: 0.3.0 or uninstalled\n ├─restricted to versions * by an explicit requirement, leaving only versions 0.3.0\n └─restricted by compatibility requirements with Requires [ae029012] to versions: uninstalled — no versions left\n └─Requires [ae029012] log:\n ├─possible versions are: [0.5.0-0.5.2, 1.0.0] or uninstalled\n └─restricted to versions 1.0.0 by an explicit requirement, leaving only versions 1.0.0", nothing)
└ @ Pkg.Operations /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/Operations.jl:1362
Installed TableTraits ───────────────── v1.0.0
Installed PooledArrays ──────────────── v0.5.3
Installed IteratorInterfaceExtensions ─ v1.0.0
Installed OpenSpecFun_jll ───────────── v0.5.3+1
Installed Tables ────────────────────── v0.2.11
Installed ROCAnalysis ───────────────── v0.3.0
Installed JSON ──────────────────────── v0.21.0
Installed Requires ──────────────────── v0.5.2
Installed Reexport ──────────────────── v0.2.0
Installed DataValueInterfaces ───────── v1.0.0
Installed SpecialFunctions ──────────── v0.10.0
Installed CategoricalArrays ─────────── v0.7.7
Installed Parsers ───────────────────── v0.3.10
Installed DataFrames ────────────────── v0.20.0
Updating `/tmp/jl_WZcfPW/Project.toml`
[51bafb47] + MIToS v2.4.0
[f535d66d] + ROCAnalysis v0.3.0
[ae029012] ↓ Requires v1.0.0 ⇒ v0.5.2
Updating `/tmp/jl_WZcfPW/Manifest.toml`
[324d7699] + CategoricalArrays v0.7.7
[a93c6f00] + DataFrames v0.20.0
[e2d170a0] + DataValueInterfaces v1.0.0
[82899510] + IteratorInterfaceExtensions v1.0.0
[682c06a0] + JSON v0.21.0
[efe28fd5] + OpenSpecFun_jll v0.5.3+1
[69de0a69] + Parsers v0.3.10
[2dfb63ee] + PooledArrays v0.5.3
[f535d66d] + ROCAnalysis v0.3.0
[189a3867] + Reexport v0.2.0
[ae029012] ↓ Requires v1.0.0 ⇒ v0.5.2
[276daf66] + SpecialFunctions v0.10.0
[3783bdb8] + TableTraits v1.0.0
[bd369af6] + Tables v0.2.11
[9fa8497b] + Future
Running sandbox
Status `/tmp/jl_WZcfPW/Project.toml`
[c7e460c6] ArgParse v0.6.2
[15f4f7f2] AutoHashEquals v0.2.0
[aaaa29a8] Clustering v0.13.3
[944b1d66] CodecZlib v0.6.0
[864edb3b] DataStructures v0.17.9
[a0c94c4b] FastaIO v0.5.0
[59287772] Formatting v0.4.1
[cd3eb016] HTTP v0.8.8
[9c8b4983] LightXML v0.8.1
[51bafb47] MIToS v2.4.0
[86f7a689] NamedArrays v0.9.3
[f9da4da7] PairwiseListMatrices v0.7.0
[92933f4c] ProgressMeter v1.2.0
[f535d66d] ROCAnalysis v0.3.0
[3cdcf5f2] RecipesBase v0.7.0
[ae029012] Requires v0.5.2
[90137ffa] StaticArrays v0.12.1
[2913bbd2] StatsBase v0.32.0
[3bb67fe8] TranscodingStreams v0.9.5
[ade2ca70] Dates
[8bb1440f] DelimitedFiles
[8ba89e20] Distributed
[37e2e46d] LinearAlgebra
[44cfe95a] Pkg
[9a3f8284] Random
[9e88b42a] Serialization
[10745b16] Statistics
[8dfed614] Test
Test Summary: | Pass Total
Utils | 31 31
Test Summary: | Pass Total
MSA | 25945 25945
Information: Error During Test at /home/pkgeval/.julia/packages/MIToS/Hha81/test/runtests.jl:46
Got exception outside of a @test
LoadError: UndefVarError: installed not defined
Stacktrace:
[1] getproperty(::Module, ::Symbol) at ./Base.jl:26
[2] top-level scope at /home/pkgeval/.julia/packages/MIToS/Hha81/test/Information/Externals.jl:3
[3] include(::String) at ./client.jl:439
[4] top-level scope at /home/pkgeval/.julia/packages/MIToS/Hha81/test/runtests.jl:53
[5] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1113
[6] top-level scope at /home/pkgeval/.julia/packages/MIToS/Hha81/test/runtests.jl:47
[7] include(::String) at ./client.jl:439
[8] top-level scope at none:6
[9] eval(::Module, ::Any) at ./boot.jl:331
[10] exec_options(::Base.JLOptions) at ./client.jl:264
[11] _start() at ./client.jl:484
in expression starting at /home/pkgeval/.julia/packages/MIToS/Hha81/test/Information/Externals.jl:3
Test Summary: | Pass Error Total
Information | 741 1 742
ContingencyTables | 430 430
Counters | 191 191
Information Measures | 49 49
Iterations | 6 6
CorrectedMutualInformation | 55 55
Pairwise Gap Percentage | 10 10
ERROR: LoadError: Some tests did not pass: 741 passed, 0 failed, 1 errored, 0 broken.
in expression starting at /home/pkgeval/.julia/packages/MIToS/Hha81/test/runtests.jl:46
err = ProcessFailedException(Base.Process[Process(`/opt/julia/bin/julia -Cnative -J/opt/julia/lib/julia/sys.so -g1 --code-coverage=none --color=no --compiled-modules=yes --check-bounds=yes --inline=yes --startup-file=no --track-allocation=none --eval 'append!(empty!(Base.DEPOT_PATH), ["/home/pkgeval/.julia", "/opt/julia/local/share/julia", "/opt/julia/share/julia", "/usr/local/share/julia"])
append!(empty!(Base.DL_LOAD_PATH), String[])
cd("/home/pkgeval/.julia/packages/MIToS/Hha81/test")
append!(empty!(ARGS), String[])
include("/home/pkgeval/.julia/packages/MIToS/Hha81/test/runtests.jl")
'`, ProcessExited(1))])
ERROR: Package MIToS errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String,N} where N) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/Types.jl:54
[2] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/Operations.jl:1471
[3] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:313
[4] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:300
[5] #test#66 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:294 [inlined]
[6] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:294 [inlined]
[7] #test#65 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:293 [inlined]
[8] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:293 [inlined]
[9] test(::String; kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:292
[10] test(::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:292
[11] top-level scope at none:13