From b7fcec1f0df05dd9d381aa9efc56be0b632a6395 Mon Sep 17 00:00:00 2001 From: drnimbusrain Date: Wed, 5 Oct 2022 13:03:14 +0000 Subject: [PATCH 1/4] Added Fengsha path to conus sample and other small mods. --- ush/create_aqm_rc_file.py | 2 +- ...config.yaml_canopy_nco_aqmna13km_1day_hera | 2 +- ...config.yaml_canopy_rrfsconus13km_1day_hera | 77 ------------------- 3 files changed, 2 insertions(+), 79 deletions(-) delete mode 100644 ush/sample_config/EMC_run/config.yaml_canopy_rrfsconus13km_1day_hera diff --git a/ush/create_aqm_rc_file.py b/ush/create_aqm_rc_file.py index b8d2031041..4272d67a00 100644 --- a/ush/create_aqm_rc_file.py +++ b/ush/create_aqm_rc_file.py @@ -66,7 +66,7 @@ def create_aqm_rc_file(cdate, run_dir, init_concentrations): aqm_fengsha_file_fn=AQM_FENGSHA_FILE_PREFIX+"_"+PREDEF_GRID_NAME+AQM_FENGSHA_FILE_SUFFIX aqm_rc_fengsha_file_fp=os.path.join(AQM_FENGSHA_DIR, aqm_fengsha_file_fn) aqm_canopy_file_fn=AQM_CANOPY_FILE+"."+mm+AQM_CANOPY_FILE_SUFFIX - aqm_rc_canopy_file_fp=os.path.join(AQM_CANOPY_DIR, aqm_canopy_file_fn) + aqm_rc_canopy_file_fp=os.path.join(AQM_CANOPY_DIR, "/", PREDEF_GRID_NAME,"/", aqm_canopy_file_fn) aqm_fire_file_fn=AQM_FIRE_FILE+"_"+yyyymmdd+"_t"+hh+"z"+AQM_FIRE_FILE_SUFFIX aqm_rc_fire_file_fp=os.path.join(AQM_FIRE_DIR, yyyymmdd, aqm_fire_file_fn) # diff --git a/ush/sample_config/EMC_run/config.yaml_canopy_nco_aqmna13km_1day_hera b/ush/sample_config/EMC_run/config.yaml_canopy_nco_aqmna13km_1day_hera index 5c620a3580..2eb89c8037 100644 --- a/ush/sample_config/EMC_run/config.yaml_canopy_nco_aqmna13km_1day_hera +++ b/ush/sample_config/EMC_run/config.yaml_canopy_nco_aqmna13km_1day_hera @@ -74,7 +74,7 @@ cpl_aqm_parm: AQM_FENGSHA_DIR: /scratch2/NCEPDEV/naqfc/RRFS_CMAQ/FENGSHA AQM_FENGSHA_FILE_PREFIX: FENGSHA_p8_10km_inputs AQM_FENGSHA_FILE_SUFFIX: .nc - AQM_CANOPY_DIR: /scratch2/NCEPDEV/naqfc/RRFS_CMAQ/canopy/793 + AQM_CANOPY_DIR: /scratch2/NCEPDEV/naqfc/RRFS_CMAQ/canopy AQM_CANOPY_FILE: gfs.t12z.geo AQM_CANOPY_FILE_SUFFIX: .canopy_regrid.nc AQM_FIRE_DIR: /scratch2/NCEPDEV/naqfc/Jianping.Huang/Data/emissions/GSCE/RAVE.in.793/RAVE_RT diff --git a/ush/sample_config/EMC_run/config.yaml_canopy_rrfsconus13km_1day_hera b/ush/sample_config/EMC_run/config.yaml_canopy_rrfsconus13km_1day_hera deleted file mode 100644 index b144b601a5..0000000000 --- a/ush/sample_config/EMC_run/config.yaml_canopy_rrfsconus13km_1day_hera +++ /dev/null @@ -1,77 +0,0 @@ -metadata: - description: config for Online-CMAQ, RRFS_CONUScompact_13km, canopy, 1cycle a day -user: - RUN_ENVIR: community - MACHINE: hera - ACCOUNT: naqfc -workflow: - USE_CRON_TO_RELAUNCH: true - CRON_RELAUNCH_INTVL_MNTS: 3 -# EXPT_BASEDIR: /scratch2/NCEPDEV/stmp3/Chan-hoo.Jeon/expt_dirs - EXPT_SUBDIR: aqm_canopy_conus13_1day - CCPP_PHYS_SUITE: FV3_GFS_v15p2 - DATE_FIRST_CYCL: '20190801' - DATE_LAST_CYCL: '20190801' - CYCL_HRS: - - 12 - FCST_LEN_HRS: 24 - PREEXISTING_DIR_METHOD: rename - VERBOSE: true - COMPILER: intel - DIAG_TABLE_TMPL_FN: diag_table_aqm - FIELD_TABLE_TMPL_FN: field_table_aqm -nco: - NET: aqm -workflow_switches: - RUN_TASK_MAKE_GRID: true - RUN_TASK_MAKE_OROG: true - RUN_TASK_MAKE_SFC_CLIMO: true - RUN_TASK_RUN_POST: true -task_get_extrn_ics: - EXTRN_MDL_NAME_ICS: FV3GFS -# FV3GFS_FILE_FMT_ICS: grib2 -task_get_extrn_lbcs: - EXTRN_MDL_NAME_LBCS: FV3GFS - LBC_SPEC_INTVL_HRS: 6 -# FV3GFS_FILE_FMT_LBCS: grib2 -task_run_fcst: - DT_ATMOS: 180 - LAYOUT_X: 16 - LAYOUT_Y: 10 - BLOCKSIZE: 32 - RESTART_INTERVAL: 24 - WTIME_RUN_FCST: 01:30:00 - QUILTING: true - PRINT_ESMF: false - PREDEF_GRID_NAME: RRFS_CONUScompact_13km -global: - DO_ENSEMBLE: false - NUM_ENS_MEMBERS: 2 - HALO_BLEND: 0 -cpl_aqm_parm: - CPL_AQM: true - RUN_TASK_ADD_AQM_ICS: true - RUN_TASK_ADD_AQM_LBCS: true - RUN_TASK_RUN_NEXUS: true - RUN_ADD_AQM_CHEM_LBCS: true - RUN_ADD_AQM_GEFS_LBCS: true - AQM_GEFS_CYC: 0 - AQM_RC_TMPL_FN: aqm.rc_canopy - AQM_CONFIG_DIR: /scratch2/NCEPDEV/naqfc/RRFS_CMAQ/aqm/epa/data - AQM_BIO_DIR: /scratch2/NCEPDEV/naqfc/RRFS_CMAQ/aqm/bio - AQM_BIO_FILE: BEIS_RRFScmaq_C775.ncf - AQM_CANOPY_DIR: /scratch2/NCEPDEV/naqfc/RRFS_CMAQ/canopy/CONUS13km - AQM_CANOPY_FILE: gfs.t12z.geo - AQM_CANOPY_FILE_SUFFIX: .canopy_regrid.nc - AQM_FIRE_DIR: /scratch2/NCEPDEV/naqfc/Jianping.Huang/Data/emissions/GSCE/GBBEPx.in.C775/Reprocessed - AQM_FIRE_FILE: Hourly_Emissions_regrid_rrfs_13km - AQM_FIRE_FILE_SUFFIX: _h72.nc - AQM_RC_FIRE_FREQUENCY: hourly - AQM_LBCS_DIR: /scratch2/NCEPDEV/naqfc/RRFS_CMAQ/LBCS/RRFS_CONUS_13km_no_blending - AQM_LBCS_FILES: gfs_bndy_chem_.tile7.000.nc - AQM_GEFS_DIR: /scratch2/NCEPDEV/naqfc/RRFS_CMAQ/GEFS_aerosol - NEXUS_INPUT_DIR: /scratch2/NCEPDEV/naqfc/RRFS_CMAQ/emissions/nexus - NEXUS_FIX_DIR: /scratch2/NCEPDEV/naqfc/RRFS_CMAQ/nexus/fix - NEXUS_GRID_FN: grid_spec_RRFS_CONUScompact_13km.nc - COLDSTART: false - WARMSTART_CYCLE_DIR: /scratch2/NCEPDEV/stmp3/Jianping.Huang/expt_dirs/uwm_aqm_cs_canopy_a/2019073112 From 44bf3e263fa91e20b9373a5744ffdbf03ea78338 Mon Sep 17 00:00:00 2001 From: drnimbusrain Date: Wed, 5 Oct 2022 13:10:54 +0000 Subject: [PATCH 2/4] Sorry also added back conus13 km without canopy grid subdir --- ...config.yaml_canopy_nco_conus13km_1day_hera | 80 +++++++++++++++++++ 1 file changed, 80 insertions(+) create mode 100644 ush/sample_config/EMC_run/config.yaml_canopy_nco_conus13km_1day_hera diff --git a/ush/sample_config/EMC_run/config.yaml_canopy_nco_conus13km_1day_hera b/ush/sample_config/EMC_run/config.yaml_canopy_nco_conus13km_1day_hera new file mode 100644 index 0000000000..e49dd71108 --- /dev/null +++ b/ush/sample_config/EMC_run/config.yaml_canopy_nco_conus13km_1day_hera @@ -0,0 +1,80 @@ +metadata: + description: config for Online-CMAQ, RRFS_CONUScompact_13km, canopy, 1cycle a day +user: + RUN_ENVIR: community + MACHINE: hera + ACCOUNT: naqfc +workflow: + USE_CRON_TO_RELAUNCH: true + CRON_RELAUNCH_INTVL_MNTS: 3 +# EXPT_BASEDIR: /scratch2/NCEPDEV/stmp3/Chan-hoo.Jeon/expt_dirs + EXPT_SUBDIR: aqm_canopy_conus13_1day + CCPP_PHYS_SUITE: FV3_GFS_v15p2 + DATE_FIRST_CYCL: '20190801' + DATE_LAST_CYCL: '20190801' + CYCL_HRS: + - 12 + FCST_LEN_HRS: 24 + PREEXISTING_DIR_METHOD: rename + VERBOSE: true + COMPILER: intel + DIAG_TABLE_TMPL_FN: diag_table_aqm + FIELD_TABLE_TMPL_FN: field_table_aqm +nco: + NET: aqm +workflow_switches: + RUN_TASK_MAKE_GRID: true + RUN_TASK_MAKE_OROG: true + RUN_TASK_MAKE_SFC_CLIMO: true + RUN_TASK_RUN_POST: true +task_get_extrn_ics: + EXTRN_MDL_NAME_ICS: FV3GFS +# FV3GFS_FILE_FMT_ICS: grib2 +task_get_extrn_lbcs: + EXTRN_MDL_NAME_LBCS: FV3GFS + LBC_SPEC_INTVL_HRS: 6 +# FV3GFS_FILE_FMT_LBCS: grib2 +task_run_fcst: + DT_ATMOS: 180 + LAYOUT_X: 16 + LAYOUT_Y: 10 + BLOCKSIZE: 32 + RESTART_INTERVAL: 24 + WTIME_RUN_FCST: 01:30:00 + QUILTING: true + PRINT_ESMF: false + PREDEF_GRID_NAME: RRFS_CONUScompact_13km +global: + DO_ENSEMBLE: false + NUM_ENS_MEMBERS: 2 + HALO_BLEND: 0 +cpl_aqm_parm: + CPL_AQM: true + RUN_TASK_ADD_AQM_ICS: true + RUN_TASK_ADD_AQM_LBCS: true + RUN_TASK_RUN_NEXUS: true + RUN_ADD_AQM_CHEM_LBCS: true + RUN_ADD_AQM_GEFS_LBCS: true + AQM_GEFS_CYC: 0 + AQM_RC_TMPL_FN: aqm.rc_canopy + AQM_CONFIG_DIR: /scratch2/NCEPDEV/naqfc/RRFS_CMAQ/aqm/epa/data + AQM_BIO_DIR: /scratch2/NCEPDEV/naqfc/RRFS_CMAQ/aqm/bio + AQM_BIO_FILE: BEIS_RRFScmaq_C775.ncf + AQM_FENGSHA_DIR: /scratch2/NCEPDEV/naqfc/RRFS_CMAQ/FENGSHA + AQM_FENGSHA_FILE_PREFIX: FENGSHA_p8_10km_inputs + AQM_FENGSHA_FILE_SUFFIX: .nc + AQM_CANOPY_DIR: /scratch2/NCEPDEV/naqfc/RRFS_CMAQ/canopy + AQM_CANOPY_FILE: gfs.t12z.geo + AQM_CANOPY_FILE_SUFFIX: .canopy_regrid.nc + AQM_FIRE_DIR: /scratch2/NCEPDEV/naqfc/Jianping.Huang/Data/emissions/GSCE/GBBEPx.in.C775/Reprocessed + AQM_FIRE_FILE: Hourly_Emissions_regrid_rrfs_13km + AQM_FIRE_FILE_SUFFIX: _h72.nc + AQM_RC_FIRE_FREQUENCY: hourly + AQM_LBCS_DIR: /scratch2/NCEPDEV/naqfc/RRFS_CMAQ/LBCS/RRFS_CONUS_13km_no_blending + AQM_LBCS_FILES: gfs_bndy_chem_.tile7.000.nc + AQM_GEFS_DIR: /scratch2/NCEPDEV/naqfc/RRFS_CMAQ/GEFS_aerosol + NEXUS_INPUT_DIR: /scratch2/NCEPDEV/naqfc/RRFS_CMAQ/emissions/nexus + NEXUS_FIX_DIR: /scratch2/NCEPDEV/naqfc/RRFS_CMAQ/nexus/fix + NEXUS_GRID_FN: grid_spec_RRFS_CONUScompact_13km.nc + COLDSTART: false + WARMSTART_CYCLE_DIR: /scratch2/NCEPDEV/stmp3/Jianping.Huang/expt_dirs/uwm_aqm_cs_canopy_a/2019073112 From fd7f49d774a34043177f5db3370fab0972effa80 Mon Sep 17 00:00:00 2001 From: drnimbusrain Date: Wed, 5 Oct 2022 13:18:56 +0000 Subject: [PATCH 3/4] Removed "/"s --- ush/create_aqm_rc_file.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/ush/create_aqm_rc_file.py b/ush/create_aqm_rc_file.py index 4272d67a00..3dc87b4d11 100644 --- a/ush/create_aqm_rc_file.py +++ b/ush/create_aqm_rc_file.py @@ -66,7 +66,7 @@ def create_aqm_rc_file(cdate, run_dir, init_concentrations): aqm_fengsha_file_fn=AQM_FENGSHA_FILE_PREFIX+"_"+PREDEF_GRID_NAME+AQM_FENGSHA_FILE_SUFFIX aqm_rc_fengsha_file_fp=os.path.join(AQM_FENGSHA_DIR, aqm_fengsha_file_fn) aqm_canopy_file_fn=AQM_CANOPY_FILE+"."+mm+AQM_CANOPY_FILE_SUFFIX - aqm_rc_canopy_file_fp=os.path.join(AQM_CANOPY_DIR, "/", PREDEF_GRID_NAME,"/", aqm_canopy_file_fn) + aqm_rc_canopy_file_fp=os.path.join(AQM_CANOPY_DIR, PREDEF_GRID_NAME, aqm_canopy_file_fn) aqm_fire_file_fn=AQM_FIRE_FILE+"_"+yyyymmdd+"_t"+hh+"z"+AQM_FIRE_FILE_SUFFIX aqm_rc_fire_file_fp=os.path.join(AQM_FIRE_DIR, yyyymmdd, aqm_fire_file_fn) # From d438323270240954e43f595f909b7f56c4b0c730 Mon Sep 17 00:00:00 2001 From: drnimbusrain Date: Wed, 5 Oct 2022 14:05:45 +0000 Subject: [PATCH 4/4] Other small changes to sample configs. --- .../EMC_run/config.yaml_canopy_nco_aqmna13km_1day_hera | 6 +++--- .../EMC_run/config.yaml_canopy_nco_conus13km_1day_hera | 4 ++-- 2 files changed, 5 insertions(+), 5 deletions(-) diff --git a/ush/sample_config/EMC_run/config.yaml_canopy_nco_aqmna13km_1day_hera b/ush/sample_config/EMC_run/config.yaml_canopy_nco_aqmna13km_1day_hera index 2eb89c8037..9b57b6db2f 100644 --- a/ush/sample_config/EMC_run/config.yaml_canopy_nco_aqmna13km_1day_hera +++ b/ush/sample_config/EMC_run/config.yaml_canopy_nco_aqmna13km_1day_hera @@ -7,9 +7,9 @@ user: workflow: USE_CRON_TO_RELAUNCH: true CRON_RELAUNCH_INTVL_MNTS: 3 -# EXPT_BASEDIR: /scratch2/NCEPDEV/stmp3/Chan-hoo.Jeon/expt_dirs - EXPT_SUBDIR: aqm.v7.0.c7 - CCPP_PHYS_SUITE: FV3_GFS_v16 +# EXPT_BASEDIR: /scratch1/NCEPDEV/stmp4/Patrick.C.Campbell/expt_dirs + EXPT_SUBDIR: aqm_canopy_na13_1day + CCPP_PHYS_SUITE: FV3_GFS_v15p2 DATE_FIRST_CYCL: '20200915' DATE_LAST_CYCL: '20200915' CYCL_HRS: diff --git a/ush/sample_config/EMC_run/config.yaml_canopy_nco_conus13km_1day_hera b/ush/sample_config/EMC_run/config.yaml_canopy_nco_conus13km_1day_hera index e49dd71108..f0589a17ee 100644 --- a/ush/sample_config/EMC_run/config.yaml_canopy_nco_conus13km_1day_hera +++ b/ush/sample_config/EMC_run/config.yaml_canopy_nco_conus13km_1day_hera @@ -1,5 +1,5 @@ metadata: - description: config for Online-CMAQ, RRFS_CONUScompact_13km, canopy, 1cycle a day + description: config for Online-CMAQ, RRFS_CONUScompact_13km, 1cycle a day user: RUN_ENVIR: community MACHINE: hera @@ -7,7 +7,7 @@ user: workflow: USE_CRON_TO_RELAUNCH: true CRON_RELAUNCH_INTVL_MNTS: 3 -# EXPT_BASEDIR: /scratch2/NCEPDEV/stmp3/Chan-hoo.Jeon/expt_dirs +# EXPT_BASEDIR: /scratch1/NCEPDEV/stmp4/Patrick.C.Campbell/expt_dirs EXPT_SUBDIR: aqm_canopy_conus13_1day CCPP_PHYS_SUITE: FV3_GFS_v15p2 DATE_FIRST_CYCL: '20190801'