Expand W3C PROV implementation

[JasperVanDenBosch]

Some fields and how to represent them

location nfo:fileUrl
size nfo:fileSize
hash nfo:filehash
created either fileLastModified on entity and prov:time on wasGeneratedBy
transformation prov:activity, prov:wasGeneratedBy
id dct:identifier
acquired prov:time on wasGeneratedBy with prov:type niprov:acquisition. Only on raw data
subject prov:entity + foaf:name
parent prov:used
project
path
hostname
added
transient
dimensions
protocol
code
logtext
script prov:plan or on the prov:activity
args
kwargs
seriesuid
filesInSeries
technique
repetition-time
field-of-view
epi-factor
diffusion

How to deal with parent files

Use location - > local id cache dict.
After provided items have been made into entities, create entities for remaining entries

Useful links

• Relations between ontologies http://lov.okfn.org/dataset/lov
• Nepomuk File ontology http://www.semanticdesktop.org/ontologies/2007/03/22/nfo/
• OBI Biomedical investigation http://obofoundry.org/ontology/obi.html
• BSPO Bio spatial http://obofoundry.org/ontology/bspo.html
• FBBI Bio imaging http://obofoundry.org/ontology/fbbi.html
• ICO informed consent http://obofoundry.org/ontology/ico.html
• Neuro Behavior http://obofoundry.org/ontology/nbo.html
• QB Cube multidim stats https://publishing-statistical-data.googlecode.com/svn/trunk/specs/src/main/html/cube.html
• Void Linked datasets http://www.w3.org/TR/void/
• NeuroLex https://github.com/SciCrunch/NIF-Ontology/issues

[JasperVanDenBosch]

Example as of Jan 13:

<?xml version="1.0" encoding="UTF-8"?>
<prov:document xmlns:dct="http://purl.org/dc/terms/" xmlns:nfo="http://www.semanticdesktop.org/ontologies/2007/03/22/nfo#" xmlns:prov="http://www.w3.org/ns/prov#">
    <nfo:FileHash id="niprov:file0.hash">
        <nfo:hashAlgorithm>MD5</nfo:hashAlgorithm>
        <nfo:hashValue>d41d8cd98f00b204e9800998ecf8427e</nfo:hashValue>
    </nfo:FileHash>
    <prov:activity id="niprov:file0.xform">
        <dct:title>kaboom</dct:title>
    </prov:activity>
    <prov:wasGeneratedBy>
        <prov:entity prov:ref="niprov:file0"/>
        <prov:activity prov:ref="niprov:file0.xform"/>
        <prov:time>2016-01-13T16:19:19.763135</prov:time>
    </prov:wasGeneratedBy>
    <prov:entity id="niprov:file0">
        <nfo:fileUrl>file://JVDB/home/jasperb/Projects/niprov/newfile.txt</nfo:fileUrl>
        <nfo:fileSize>0</nfo:fileSize>
        <nfo:fileLastModified>2016-01-13T16:19:19.763135</nfo:fileLastModified>
        <nfo:hasHash>niprov:file0.hash</nfo:hasHash>
    </prov:entity>
</prov:document>