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str_editor.php
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str_editor.php
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<script>
const STR_ID = '<?= $str_id ?>'
</script>
<style>
table#STR-input td input {
max-width: 26rem;
}
</style>
<div class="content">
<h1>STR Profile Editor</h1>
<p class="text-danger">
This page is only for internal use!
</p>
</div>
<div class="card" id="meta-form">
<h2 class="card-title">Metadata</h2>
<form method="post" action="<?= ROOTPATH ?>/str/edit-meta/<?= $str_id ?>" class="">
<table class="table table-sm" id="META-input">
<thead>
<tr>
<th>Datafield</th>
<th>Current value</th>
<th>Edit</th>
</tr>
</thead>
<tbody>
<?php foreach ($meta as $row) { ?>
<?php foreach ($row as $key => $value) { ?>
<tr>
<td class="w-200">
<?= $key ?>
</td>
<td class="w-200">
<?php
switch ($key) {
case 'reference':
case 'highlight':
echo ($value == 0) ? 'no': 'yes';
break;
case 'created':
case 'date':
case 'date_2':
case 'date_animal_pcr':
$date = new DateTime($value);
echo $date->format('d.m.Y');
break;
default:
echo $value;
break;
}
?>
</td>
<td>
<?php
switch ($key) {
case 'reference':
case 'highlight':
echo "<div class='custom-switch'>
<input autocomplete='off' type='checkbox' id='switch-$key' value='1' name='$key' " . ($value == 1 ? 'checked' : '') . ">
<label for='switch-$key' class='blank'></label>
</div>";
break;
case 'str_id':
case 'created':
echo "cannot be changed";
break;
case 'cell_id':
echo "is assigned automatically based on ACC (only if reference!)";
break;
case 'notes':
echo "<textarea name='$key' id='$key' cols='30' rows='10' class='form-control form-control-sm'>$value</textarea>";
break;
case 'gender':
case 'M':
case 'R':
case 'CH':
case 'SH':
case 'EBV':
case 'largeT':
case 'MMR':
$enum = [];
echo "<select name='$key' id='$key' class='form-control form-control-sm'>";
if ($key == 'gender') {
$enum = ['', 'male', 'female', 'unknown'];
} elseif ($key == "MMR") {
$enum = ['', 'MSS', 'MSI', 'MSI-L', 'MSI-H'];
} else {
$enum = ['', '-', '+', '(+)'];
}
foreach ($enum as $option) {
echo "<option value='$option' " . ($value == $option ? 'selected' : '') . ">$option</option>";
}
echo "</select>";
break;
case 'date':
case 'date_2':
case 'date_animal_pcr':
echo " <input autocomplete='off' type='date' name='$key' id='$key' value='$value' class='form-control form-control-sm'>";
break;
case 'ACC':
case 'cellline':
echo " <input autocomplete='off' type='text' name='$key' id='$key' value='$value' class='form-control form-control-sm' required>";
break;
default:
echo " <input autocomplete='off' type='text' name='$key' id='$key' value='$value' class='form-control form-control-sm'>";
break;
}
?>
</td>
</tr>
<?php } ?>
<?php } ?>
</tbody>
</table>
<div class="mt-20">
<button class="btn btn-primary" type="submit"><i class="fas fa-check"></i> Submit changes</button>
</div>
</form>
</div>
<div class="card" id="profile-form">
<h2 class="card-title">Profile</h2>
<form method="post" action="<?= ROOTPATH ?>/str/edit-profile/<?= $str_id ?>" class="">
<table class="table table-sm w-auto" id="STR-input">
<thead>
<tr>
<th>Locus</th>
<th>Allele 1</th>
<th>Allele 2</th>
<th id="addAllele"><button type="button" class="btn btn-sm" onclick="addAllele()" data-toggle="tooltip" data-title="Add more alleles to the search">+</button></th>
</tr>
</thead>
<tbody>
<tr id="D5S818">
<td><label class="d-inline" for="D5S818">D5S818</label></td>
<td class="ref"><input class="form-control form-control-sm " type="number" step="0.1" name="D5S818_1" value=""></td>
<td><input class="form-control form-control-sm " type="number" step="0.1" name="D5S818_2" value=""></td>
</tr>
<tr id="D13S317">
<td><label class="d-inline" for="D13S317">D13S317</label></td>
<td class="ref"><input class="form-control form-control-sm " type="number" step="0.1" name="D13S317_1" value=""></td>
<td><input class="form-control form-control-sm " type="number" step="0.1" name="D13S317_2" value=""></td>
</tr>
<tr id="D7S820">
<td><label class="d-inline" for="D7S820">D7S820</label></td>
<td class="ref"><input class="form-control form-control-sm " type="number" step="0.1" name="D7S820_1" value=""></td>
<td><input class="form-control form-control-sm " type="number" step="0.1" name="D7S820_2" value=""></td>
</tr>
<tr id="D16S539">
<td><label class="d-inline" for="D16S539">D16S539</label></td>
<td class="ref"><input class="form-control form-control-sm " type="number" step="0.1" name="D16S539_1" value=""></td>
<td><input class="form-control form-control-sm " type="number" step="0.1" name="D16S539_2" value=""></td>
</tr>
<tr id="vWA">
<td><label class="d-inline" for="vWA">vWA</label></td>
<td class="ref"><input class="form-control form-control-sm " type="number" step="0.1" name="vWA_1" value=""></td>
<td><input class="form-control form-control-sm " type="number" step="0.1" name="vWA_2" value=""></td>
</tr>
<tr id="TH01">
<td><label class="d-inline" for="TH01">TH01</label></td>
<td class="ref"><input class="form-control form-control-sm " type="number" step="0.1" name="TH01_1" value=""></td>
<td><input class="form-control form-control-sm " type="number" step="0.1" name="TH01_2" value=""></td>
</tr>
<tr id="TPOX">
<td><label class="d-inline" for="TPOX">TPOX</label></td>
<td class="ref"><input class="form-control form-control-sm " type="number" step="0.1" name="TPOX_1" value=""></td>
<td><input class="form-control form-control-sm " type="number" step="0.1" name="TPOX_2" value=""></td>
</tr>
<tr id="CSF1PO">
<td><label class="d-inline" for="CSF1PO">CSF1PO</label></td>
<td class="ref"><input class="form-control form-control-sm " type="number" step="0.1" name="CSF1PO_1" value=""></td>
<td><input class="form-control form-control-sm " type="number" step="0.1" name="CSF1PO_2" value=""></td>
</tr>
<tr id="Amelogenin">
<td><label class="d-inline" for="Amelogenin">Amelogenin</label></td>
<td class="ref">
<select class="form-control form-control-sm " name="Amelogenin_1">
<option value=""></option>
<option value="1">X</option>
<option value="2">Y</option>
</select>
</td>
<td>
<select class="form-control form-control-sm " name="Amelogenin_2">
<option value=""></option>
<option value="1">X</option>
<option value="2">Y</option>
</select>
</td>
</tr>
<tr id="D3S1358">
<td><label class="d-inline" for="D3S1358">D3S1358</label></td>
<td class="ref"><input class="form-control form-control-sm " type="number" step="0.1" name="D3S1358_1" value=""></td>
<td><input class="form-control form-control-sm " type="number" step="0.1" name="D3S1358_2" value=""></td>
</tr>
<tr id="D21S11">
<td><label class="d-inline" for="D21S11">D21S11</label></td>
<td class="ref"><input class="form-control form-control-sm " type="number" step="0.1" name="D21S11_1" value=""></td>
<td><input class="form-control form-control-sm " type="number" step="0.1" name="D21S11_2" value=""></td>
</tr>
<tr id="D18S51">
<td><label class="d-inline" for="D18S51">D18S51</label></td>
<td class="ref"><input class="form-control form-control-sm " type="number" step="0.1" name="D18S51_1" value=""></td>
<td><input class="form-control form-control-sm " type="number" step="0.1" name="D18S51_2" value=""></td>
</tr>
<tr id="PentaE">
<td><label class="d-inline" for="PentaE">PentaE</label></td>
<td class="ref"><input class="form-control form-control-sm " type="number" step="0.1" name="PentaE_1" value=""></td>
<td><input class="form-control form-control-sm " type="number" step="0.1" name="PentaE_2" value=""></td>
</tr>
<tr id="PentaD">
<td><label class="d-inline" for="PentaD">PentaD</label></td>
<td class="ref"><input class="form-control form-control-sm " type="number" step="0.1" name="PentaD_1" value=""></td>
<td><input class="form-control form-control-sm " type="number" step="0.1" name="PentaD_2" value=""></td>
</tr>
<tr id="D8S1179">
<td><label class="d-inline" for="D8S1179">D8S1179</label></td>
<td class="ref"><input class="form-control form-control-sm " type="number" step="0.1" name="D8S1179_1" value=""></td>
<td><input class="form-control form-control-sm " type="number" step="0.1" name="D8S1179_2" value=""></td>
</tr>
<tr id="FGA">
<td><label class="d-inline" for="FGA">FGA</label></td>
<td class="ref"><input class="form-control form-control-sm " type="number" step="0.1" name="FGA_1" value=""></td>
<td><input class="form-control form-control-sm " type="number" step="0.1" name="FGA_2" value=""></td>
</tr>
<tr id="D19S433">
<td><label class="d-inline" for="D19S433">D19S433</label></td>
<td class="ref"><input class="form-control form-control-sm " type="number" step="0.1" name="D19S433_1" value=""></td>
<td><input class="form-control form-control-sm " type="number" step="0.1" name="D19S433_2" value=""></td>
</tr>
<tr id="D2S1338">
<td><label class="d-inline" for="D2S1338">D2S1338</label></td>
<td class="ref"><input class="form-control form-control-sm " type="number" step="0.1" name="D2S1338_1" value=""></td>
<td><input class="form-control form-control-sm " type="number" step="0.1" name="D2S1338_2" value=""></td>
</tr>
</tbody>
</table>
<div class="mt-20">
<button class="btn btn-primary" type="submit"><i class="fas fa-check"></i> Submit changes</button>
</div>
</form>
</div>
<div class="card alert alert-danger">
<h4 class="alert-header">Delete this dataset</h4>
<form action="<?= ROOTPATH ?>/str/delete/<?= $str_id ?>" method="post">
<button class="btn btn-danger" type="submit"><i class="fas fa-trash-alt"></i> Delete</button>
</form>
</div>