DESCRIPTION

Package: FRmatch
Title: Cell type matching in single-cell RNA-sequencing data using FR-Match
Version: 2.0.0
Authors@R: c(
    person(given = "Yun",
           family = "Zhang",
           role = c("aut", "cre"),
           email = "zhangy@jcvi.org"),
    person(given = "Richard",
           family = "Scheuermann",
           role = c("ctb"),
           email = "RScheuermann@jcvi.org")
    )
Description: FR-Match is a cell type cluster mapping algorithm for single cell RNA-sequencing (scRNA-seq) data. The core method is based on a statistical test called Friedman-Rafsky (FR) test, which is a multivariate non-parametric test. This package implements the core algorithms and companion visualization tools for the method.
Depends: R (>= 4.0.0), shiny (>= 1.2.0), SingleCellExperiment, pbmcapply
Imports: methods, S4Vectors, SummarizedExperiment, lsa, igraph, ade4, tibble, dplyr, tidyr, forcats, magrittr, pheatmap, RColorBrewer, ggplot2, gridExtra, viridis
Suggests: 
    knitr,
    rmarkdown
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.3.1
VignetteBuilder: knitr