You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Trying to build and export a SVDB database with data called from GRCh38 with chr prefixes. Seems these are stripped when building and exporting a database which hinders using the resulting vcf for annotation.
Hi,
Trying to build and export a SVDB database with data called from GRCh38 with
chr
prefixes. Seems these are stripped when building and exporting a database which hinders using the resulting vcf for annotation.Is this the line removing the
chr
prefix? Do we need to have it or can we keep the original chromosome names?https://github.com/J35P312/SVDB/blame/3e95936b13dda6507d4f9648824727068b4174ea/svdb/readVCF.py#L11
The text was updated successfully, but these errors were encountered: