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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,3 @@ | ||
| ImageIOIndex.ts.in | ||
| dist | ||
| emscripten-build |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,25 @@ | ||
| include(FetchContent) | ||
| option(ZSTD_BUILD_CONTRIB "BUILD_CONTRIB" OFF) | ||
| option(ZSTD_BUILD_PROGRAMS "BUILD_PROGRAMS" OFF) | ||
| option(ZSTD_BUILD_SHARED "BUILD_SHARED" OFF) | ||
| option(ZSTD_BUILD_STATIC "BUILD_STATIC" ON) | ||
| option(ZSTD_BUILD_TESTS "BUILD_TESTS" OFF) | ||
| option(ZSTD_BUILD_LEGACY_SUPPORT "BUILD_LEGACY_SUPPORT" OFF) | ||
| option(ZSTD_MULTITHREAD_SUPPORT "BUILD_MULTITHREAD_SUPPORT" OFF) | ||
| option(ZSTD_BUILD_PROGRAMS_LINK_SHARED "BUILD_PROGRAMS_LINK_SHARED" OFF) | ||
| option(ZSTD_BUILD_LZ4 "BUILD_LZ4" OFF) | ||
| option(ZSTD_BUILD_LZMA "BUILD_LZMA" OFF) | ||
| option(ZSTD_BUILD_ZLIB "BUILD_ZLIB" OFF) | ||
| set(zstd_GIT_REPOSITORY "https://github.com/facebook/zstd.git") | ||
| # v1.5.2 | ||
| set(zstd_GIT_TAG c9c7be85f49f45a581ec00c309afda5c62ba9ef2) | ||
| FetchContent_Declare( | ||
| zstd_lib | ||
| GIT_REPOSITORY ${zstd_GIT_REPOSITORY} | ||
| GIT_TAG ${zstd_GIT_TAG} | ||
| ) | ||
|
|
||
| FetchContent_MakeAvailable(zstd_lib) | ||
| set(zstd_lib_INCLUDE_DIR "${zstd_lib_SOURCE_DIR}/lib") | ||
| include_directories(${zstd_lib_INCLUDE_DIR}) | ||
| add_subdirectory("${zstd_lib_SOURCE_DIR}/build/cmake" "${zstd_lib_BINARY_DIR}") |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,193 @@ | ||
| cmake_minimum_required(VERSION 3.16) | ||
| project(convert-image) | ||
|
|
||
| set(CMAKE_CXX_STANDARD 17) | ||
|
|
||
| if (NOT TARGET libzstd_static) | ||
| include(${CMAKE_CURRENT_SOURCE_DIR}/BuildZstd.cmake) | ||
| endif() | ||
|
|
||
| if(WASI) | ||
| set(WebAssemblyInterface_ImageIOModules | ||
| "ITKIOPNG" | ||
| "ITKIOMeta" | ||
| "ITKIOTIFF" | ||
| "ITKIONIFTI" | ||
| "ITKIOJPEG" | ||
| "ITKIONRRD" | ||
| "ITKIOVTK" | ||
| "ITKIOBMP" | ||
| "ITKIOMRC" | ||
| "ITKIOLSM" | ||
| "MGHIO" | ||
| "ITKIOBioRad" | ||
| "ITKIOGIPL" | ||
| "ITKIOGE" | ||
| "ITKIOGDCM" | ||
| "IOScanco" | ||
| "IOFDF" | ||
| CACHE STRING | ||
| "String delimited list of ITK image IO modules to support.") | ||
| else() | ||
| # This list should be ordered from approximately most commonly to least | ||
| # commonly used modules. | ||
| set(WebAssemblyInterface_ImageIOModules | ||
| "ITKIOPNG" | ||
| "ITKIOMeta" | ||
| "ITKIOTIFF" | ||
| "ITKIONIFTI" | ||
| "ITKIOJPEG" | ||
| "ITKIONRRD" | ||
| "ITKIOVTK" | ||
| "ITKIOBMP" | ||
| "ITKIOHDF5" | ||
| "ITKIOMINC" | ||
| "ITKIOMRC" | ||
| "ITKIOLSM" | ||
| "MGHIO" | ||
| "ITKIOBioRad" | ||
| "ITKIOGIPL" | ||
| "ITKIOGE" | ||
| "ITKIOGDCM" | ||
| "IOScanco" | ||
| "IOFDF" | ||
| CACHE STRING | ||
| "String delimited list of ITK image IO modules to support.") | ||
| endif() | ||
| set(imageios_ITKIOPNG itkPNGImageIO) | ||
| set(imageio_id_itkPNGImageIO 0) | ||
|
|
||
| set(imageios_ITKIOMeta itkMetaImageIO) | ||
| set(imageio_id_itkMetaImageIO 1) | ||
|
|
||
| set(imageios_ITKIOTIFF itkTIFFImageIO) | ||
| set(imageio_id_itkTIFFImageIO 2) | ||
|
|
||
| set(imageios_ITKIONIFTI itkNiftiImageIO) | ||
| set(imageio_id_itkNiftiImageIO 3) | ||
|
|
||
| set(imageios_ITKIOJPEG itkJPEGImageIO) | ||
| set(imageio_id_itkJPEGImageIO 4) | ||
|
|
||
| set(imageios_ITKIONRRD itkNrrdImageIO) | ||
| set(imageio_id_itkNrrdImageIO 5) | ||
|
|
||
| set(imageios_ITKIOVTK itkVTKImageIO) | ||
| set(imageio_id_itkVTKImageIO 6) | ||
|
|
||
| set(imageios_ITKIOBMP itkBMPImageIO) | ||
| set(imageio_id_itkBMPImageIO 7) | ||
|
|
||
| set(imageios_ITKIOHDF5 itkHDF5ImageIO) | ||
| set(imageio_id_itkHDF5ImageIO 8) | ||
|
|
||
| set(imageios_ITKIOMINC itkMINCImageIO) | ||
| set(imageio_id_itkMINCImageIO 9) | ||
|
|
||
| set(imageios_ITKIOMRC itkMRCImageIO) | ||
| set(imageio_id_itkMRCImageIO 10) | ||
|
|
||
| set(imageios_ITKIOLSM itkLSMImageIO) | ||
| set(imageio_id_itkLSMImageIO 11) | ||
|
|
||
| set(imageios_MGHIO itkMGHImageIO) | ||
| set(imageio_id_itkMGHImageIO 12) | ||
|
|
||
| set(imageios_ITKIOBioRad itkBioRadImageIO) | ||
| set(imageio_id_itkBioRadImageIO 13) | ||
|
|
||
| set(imageios_ITKIOGIPL itkGiplImageIO) | ||
| set(imageio_id_itkGiplImageIO 14) | ||
|
|
||
| set(imageios_ITKIOGE itkGEAdwImageIO itkGE4ImageIO itkGE5ImageIO) | ||
| set(imageio_id_itkGE4ImageIO 15) | ||
| set(imageio_id_itkGE5ImageIO 16) | ||
| set(imageio_id_itkGEAdwImageIO 17) | ||
|
|
||
| set(imageios_ITKIOGDCM itkGDCMImageIO) | ||
| set(imageio_id_itkGDCMImageIO 18) | ||
|
|
||
| set(imageios_IOScanco itkScancoImageIO) | ||
| set(imageio_id_itkScancoImageIO 19) | ||
|
|
||
| set(imageios_IOFDF itkFDFImageIO) | ||
| set(imageio_id_itkFDFImageIO 20) | ||
|
|
||
| set(imageios_WebAssemblyInterface itkWasmImageIO itkWasmZstdImageIO) | ||
| set(imageio_id_itkWasmImageIO 21) | ||
| set(imageio_id_itkWasmZstdImageIO 22) | ||
|
|
||
| set(ITK_NO_IMAGEIO_FACTORY_REGISTER_MANAGER 1) | ||
| set(ImageIOIndex_ARRAY "") | ||
| foreach(io_module ${WebAssemblyInterface_ImageIOModules} WebAssemblyInterface) | ||
| if (DEFINED WebAssemblyInterface_INCLUDE_DIRS) | ||
| if(${io_module} STREQUAL "WebAssemblyInterface") | ||
| find_package(ITK REQUIRED COMPONENTS ITKIOImageBase) | ||
| include(${ITK_USE_FILE}) | ||
| include_directories(${WebAssemblyInterface_INCLUDE_DIRS}) | ||
| include_directories(${CMAKE_CURRENT_SOURCE_DIR}) | ||
| list(APPEND ITK_LIBRARIES ${WebAssemblyInterface_LIBRARIES}) | ||
| else() | ||
| find_package(ITK REQUIRED COMPONENTS ${io_module} WebAssemblyInterface) | ||
| include(${ITK_USE_FILE}) | ||
| endif() | ||
| else() | ||
| find_package(ITK REQUIRED COMPONENTS ${io_module} WebAssemblyInterface) | ||
| include(${ITK_USE_FILE}) | ||
| endif() | ||
|
|
||
| if(NOT DEFINED imageios_${io_module}) | ||
| message(FATAL_ERROR "Unknown ImageIOBase classes for module ${io_module}") | ||
| endif() | ||
| foreach(imageio ${imageios_${io_module}}) | ||
| string(SUBSTRING "${imageio}" 3 -1 ioname) | ||
| set(read_binary "${ioname}-read-image") | ||
| set(write_binary "${ioname}-write-image") | ||
| set(ImageIOIndex_ARRAY "${ImageIOIndex_ARRAY}'${ioname}', ") | ||
| set(extra_srcs) | ||
| if(${imageio} STREQUAL "itkWasmZstdImageIO") | ||
| list(APPEND ITK_LIBRARIES libzstd_static) | ||
| list(APPEND extra_srcs itkWasmZstdImageIO.cxx) | ||
| endif() | ||
|
|
||
| add_executable(${read_binary} read-image.cxx ${extra_srcs}) | ||
| target_link_libraries(${read_binary} PUBLIC ${ITK_LIBRARIES}) | ||
| target_compile_definitions(${read_binary} PUBLIC -DIMAGE_IO_CLASS=${imageio_id_${imageio}}) | ||
| add_executable(${write_binary} write-image.cxx ${extra_srcs}) | ||
| target_link_libraries(${write_binary} PUBLIC ${ITK_LIBRARIES}) | ||
| target_compile_definitions(${write_binary} PUBLIC -DIMAGE_IO_CLASS=${imageio_id_${imageio}}) | ||
| if (EMSCRIPTEN) | ||
| set(target_esm_read "${read_binary}") | ||
| set(target_umd_read "${read_binary}.umd") | ||
| set(target_esm_write "${write_binary}") | ||
| set(target_umd_write "${write_binary}.umd") | ||
| target_compile_definitions(${target_umd_read} PUBLIC -DIMAGE_IO_CLASS=${imageio_id_${imageio}}) | ||
| target_compile_definitions(${target_umd_write} PUBLIC -DIMAGE_IO_CLASS=${imageio_id_${imageio}}) | ||
| foreach(target ${target_esm_read} ${target_umd_read} ${target_esm_write} ${target_umd_write}) | ||
| set(exception_catching ) | ||
| if(${io_module} STREQUAL "ITKIOGE") | ||
| set(exception_catching " -s DISABLE_EXCEPTION_CATCHING=0") | ||
| endif() | ||
| set(imageio_common_link_flags " -s ERROR_ON_UNDEFINED_SYMBOLS=0 -s SUPPORT_LONGJMP=1") | ||
| get_property(link_flags TARGET ${target} PROPERTY LINK_FLAGS) | ||
| set_property(TARGET ${target} APPEND_STRING PROPERTY LINK_FLAGS " ${imageio_common_link_flags} ${link_flags}") | ||
| set_property(TARGET ${target} | ||
| PROPERTY RUNTIME_OUTPUT_DIRECTORY | ||
| ${CMAKE_CURRENT_SOURCE_DIR}/typescript/dist/pipelines | ||
| ) | ||
| endforeach() | ||
| elseif (WASI) | ||
| foreach(target ${read_binary} ${write_binary}) | ||
| set(exception_catching ) | ||
| set_property(TARGET ${target} | ||
| PROPERTY RUNTIME_OUTPUT_DIRECTORY | ||
| ${CMAKE_CURRENT_SOURCE_DIR}/typescript/wasi/pipelines | ||
| ) | ||
| endforeach() | ||
| endif() | ||
| endforeach() | ||
| endforeach() | ||
| if(EMSCRIPTEN) | ||
| configure_file(${CMAKE_CURRENT_SOURCE_DIR}/ImageIOIndex.ts.in | ||
| ${CMAKE_CURRENT_SOURCE_DIR}/typescript/src/ImageIOIndex.ts @ONLY) | ||
| endif() |
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