diff --git a/automated-issue-ref.ipynb b/automated-issue-ref.ipynb index 256da279..83bf47f0 100755 --- a/automated-issue-ref.ipynb +++ b/automated-issue-ref.ipynb @@ -113,7 +113,16 @@ "processed 990 milestones\n", "processed 1000 milestones\n", "processed 1010 milestones\n", - "processed 1020 milestones\n" + "processed 1020 milestones\n", + "processed 1030 milestones\n", + "processed 1040 milestones\n", + "processed 1050 milestones\n", + "processed 1060 milestones\n", + "processed 1070 milestones\n", + "processed 1080 milestones\n", + "processed 1090 milestones\n", + "processed 1100 milestones\n", + "processed 1110 milestones\n" ] } ], @@ -210,7 +219,7 @@ }, { "cell_type": "code", - "execution_count": 6, + "execution_count": 3, "id": "88a367db", "metadata": {}, "outputs": [], @@ -247,7 +256,7 @@ }, { "cell_type": "code", - "execution_count": 7, + "execution_count": 4, "id": "f5b15585", "metadata": {}, "outputs": [], @@ -270,7 +279,7 @@ }, { "cell_type": "code", - "execution_count": 8, + "execution_count": 5, "id": "a56544a8", "metadata": {}, "outputs": [ @@ -278,29 +287,86 @@ "name": "stdout", "output_type": "stream", "text": [ - "['DV.7.1.1', 'sars-cov-2-variants/lineage-proposals#732']\n", - "['DV.7.1.2', '#2258']\n", - "['JP.1', 'sars-cov-2-variants/lineage-proposals#655']\n", - "['CH.1.1.32', '#2150']\n", - "['GK.2.1.1', 'sars-cov-2-variants/lineage-proposals#716']\n", - "['GK.2.3', 'sars-cov-2-variants/lineage-proposals#813']\n", - "['GK.4', '#2276']\n", - "['JD.1.1.1', 'sars-cov-2-variants/lineage-proposals#864']\n", - "['JD.1.1.2', 'sars-cov-2-variants/lineage-proposals#754']\n", - "['FL.1.6', 'sars-cov-2-variants/lineage-proposals#59']\n", - "['FL.15.1.1', 'sars-cov-2-variants/lineage-proposals#646']\n", - "['FL.15.2', 'sars-cov-2-variants/lineage-proposals#578']\n", - "['FL.20.2', 'sars-cov-2-variants/lineage-proposals#571']\n", - "['FL.32', 'sars-cov-2-variants/lineage-proposals#719']\n", - "['FL.32.1', 'sars-cov-2-variants/lineage-proposals#719']\n", - "['FL.33.1', 'sars-cov-2-variants/lineage-proposals#828']\n", - "['HK.3.3', 'sars-cov-2-variants/lineage-proposals#744']\n", - "['JG.3', '#2231']\n", - "['EG.5.1.8', 'sars-cov-2-variants/lineage-proposals#537']\n", - "['EG.6.1.1', 'sars-cov-2-variants/lineage-proposals#546']\n", - "['JM.1', 'sars-cov-2-variants/lineage-proposals#569']\n", - "['GW.5', '#2142']\n", - "['GS.5', 'sars-cov-2-variants/lineage-proposals#768']\n" + "['JV.1', 'sars-cov-2-variants/lineage-proposals#760']\n", + "['DV.7.1.3', 'sars-cov-2-variants/lineage-proposals#851']\n", + "['DV.7.1.5', 'sars-cov-2-variants/lineage-proposals#729']\n", + "['JN.3', 'sars-cov-2-variants/lineage-proposals#892']\n", + "['JQ.1', 'sars-cov-2-variants/lineage-proposals#906']\n", + "['JH.2', '#2068']\n", + "['FD.5.1', 'sars-cov-2-variants/lineage-proposals#385']\n", + "['GK.1.2.1', '#2314']\n", + "['GK.1.6', 'sars-cov-2-variants/lineage-proposals#643']\n", + "['GK.1.6.1', 'sars-cov-2-variants/lineage-proposals#643']\n", + "['GK.2.4', 'sars-cov-2-variants/lineage-proposals#823']\n", + "['GK.5', 'sars-cov-2-variants/lineage-proposals#736']\n", + "['GK.5.1', 'sars-cov-2-variants/lineage-proposals#736']\n", + "['GK.6', 'sars-cov-2-variants/lineage-proposals#715']\n", + "['GK.7', 'sars-cov-2-variants/lineage-proposals#907']\n", + "['GK.8', 'sars-cov-2-variants/lineage-proposals#909']\n", + "['GK.8.1', 'sars-cov-2-variants/lineage-proposals#909']\n", + "['GK.10', 'sars-cov-2-variants/lineage-proposals#761']\n", + "['GN.1.3', 'sars-cov-2-variants/lineage-proposals#816']\n", + "['JD.1.1.3', 'sars-cov-2-variants/lineage-proposals#896']\n", + "['KA.1', 'sars-cov-2-variants/lineage-proposals#822']\n", + "['JZ.1', 'sars-cov-2-variants/lineage-proposals#224']\n", + "['HN.2', 'sars-cov-2-variants/lineage-proposals#676']\n", + "['HN.2.1', 'sars-cov-2-variants/lineage-proposals#676']\n", + "['HN.3.1', 'sars-cov-2-variants/lineage-proposals#383']\n", + "['HN.5', 'sars-cov-2-variants/lineage-proposals#936']\n", + "['FL.13.4', 'sars-cov-2-variants/lineage-proposals#638']\n", + "['FL.13.4.1', 'sars-cov-2-variants/lineage-proposals#638']\n", + "['FL.13.5', 'sars-cov-2-variants/lineage-proposals#692']\n", + "['FL.23.2', 'sars-cov-2-variants/lineage-proposals#381']\n", + "['HK.1.2', 'sars-cov-2-variants/lineage-proposals#631']\n", + "['HK.2.1', 'sars-cov-2-variants/lineage-proposals#537']\n", + "['HK.3.4', 'sars-cov-2-variants/lineage-proposals#764']\n", + "['HK.3.5', 'sars-cov-2-variants/lineage-proposals#865']\n", + "['HK.3.6', 'sars-cov-2-variants/lineage-proposals#809']\n", + "['HK.3.7', 'sars-cov-2-variants/lineage-proposals#793']\n", + "['HK.11.1', 'sars-cov-2-variants/lineage-proposals#537']\n", + "['HK.13', 'sars-cov-2-variants/lineage-proposals#537']\n", + "['HK.13.2', 'sars-cov-2-variants/lineage-proposals#943']\n", + "['HK.14', 'sars-cov-2-variants/lineage-proposals#537']\n", + "['HK.15', 'sars-cov-2-variants/lineage-proposals#588']\n", + "['HK.16', 'sars-cov-2-variants/lineage-proposals#841']\n", + "['HK.18', 'sars-cov-2-variants/lineage-proposals#800']\n", + "['JG.3.1', 'sars-cov-2-variants/lineage-proposals#829']\n", + "['HV.1.1', 'sars-cov-2-variants/lineage-proposals#866']\n", + "['HV.1.3', 'sars-cov-2-variants/lineage-proposals#924']\n", + "['JR.1.1', 'sars-cov-2-variants/lineage-proposals#537']\n", + "['EG.6.1.2', 'sars-cov-2-variants/lineage-proposals#826']\n", + "['GA.4.1.3', 'sars-cov-2-variants/lineage-proposals#968']\n", + "['GA.4.3', 'sars-cov-2-variants/lineage-proposals#908']\n", + "['GA.7.1', 'sars-cov-2-variants/lineage-proposals#755']\n", + "['FE.1.1.5', 'sars-cov-2-variants/lineage-proposals#556']\n", + "['GW.5.3', 'sars-cov-2-variants/lineage-proposals#815']\n", + "['GW.5.3.1', 'sars-cov-2-variants/lineage-proposals#815']\n", + "['FY.1.4', 'sars-cov-2-variants/lineage-proposals#165']\n", + "['FY.5.1', 'sars-cov-2-variants/lineage-proposals#929']\n", + "['FY.5.1.1', 'sars-cov-2-variants/lineage-proposals#790']\n", + "['FY.6.2', 'sars-cov-2-variants/lineage-proposals#637']\n", + "['FY.8', 'sars-cov-2-variants/lineage-proposals#635']\n", + "['JC.2', 'sars-cov-2-variants/lineage-proposals#961']\n", + "['JC.5', 'sars-cov-2-variants/lineage-proposals#629']\n", + "['HH.2.1', 'sars-cov-2-variants/lineage-proposals#236']\n", + "['HH.5', 'sars-cov-2-variants/lineage-proposals#438']\n", + "['HH.6', 'sars-cov-2-variants/lineage-proposals#236']\n", + "['HH.8.1', 'sars-cov-2-variants/lineage-proposals#236']\n", + "['JE.1.1', 'sars-cov-2-variants/lineage-proposals#827']\n", + "['GJ.1.2.6', 'sars-cov-2-variants/lineage-proposals#726']\n", + "['GJ.1.2.7', 'sars-cov-2-variants/lineage-proposals#726']\n", + "['GJ.5', 'sars-cov-2-variants/lineage-proposals#429']\n", + "['GJ.5.1', 'sars-cov-2-variants/lineage-proposals#429']\n", + "['GJ.6', 'sars-cov-2-variants/lineage-proposals#675']\n", + "['GJ.7', 'sars-cov-2-variants/lineage-proposals#439']\n", + "['XBB.2.3.15', 'sars-cov-2-variants/lineage-proposals#722']\n", + "['JS.2', 'sars-cov-2-variants/lineage-proposals#722']\n", + "['XBB.2.3.18', 'sars-cov-2-variants/lineage-proposals#738']\n", + "['JY.1', 'sars-cov-2-variants/lineage-proposals#731']\n", + "['XBC.1.6.5', 'sars-cov-2-variants/lineage-proposals#479']\n", + "['JT.1', 'sars-cov-2-variants/lineage-proposals#203']\n", + "['XCZ', 'sars-cov-2-variants/lineage-proposals#839']\n", + "['XDB', 'sars-cov-2-variants/lineage-proposals#969']\n" ] } ], @@ -391,10 +457,10 @@ " linsp=data[i].split()\n", " \n", " if (len(linsp)>0) and (linsp[0] in missing_refs):\n", - " if \"From\" in data[i]:\n", - " data[i]=data[i].split(\" From\")[0]\n", + " if \"，from\" in data[i]:\n", + " data[i]=data[i].split(\", from\")[0]\n", " upgrade_count+=1\n", - " data[i]=data[i].replace('\\n','')+\" From \"+missing_refs[linsp[0]]+'\\n'\n", + " data[i]=data[i].replace('\\n','')+\", from \"+missing_refs[linsp[0]]+'\\n'\n", " if 'sars' in missing_refs[linsp[0]]:\n", " sub_count+=1\n", " else:\n", diff --git a/autoref/milestone.txt b/autoref/milestone.txt index 5566527c..413206e8 100755 --- a/autoref/milestone.txt +++ b/autoref/milestone.txt @@ -889,6 +889,10 @@ 819 GK.4 GK.4 820 JG.3 JG.3 821 CH.1.1.32 CH.1.1.32 +822 XCQ XCQ +823 XCR XCR +824 GK.1.2.1 GK.1.2.1 +825 XCS XCS sars#1 XCE XCE sars#2 XCF XCF sars#4 CM.7.1 CM.7.1+CM.7.1.1 @@ -1001,8 +1005,9 @@ sars#114 HK.3.3 HK.3.3 sars#115 FL.4.11 FL.4.11 sars#116 GJ.1.2.5 GJ.1.2.5 sars#117 HK.3.2 HK.3.2 -sars#118 EG.5.1.8 EG.5.1.8 -sars#119 GW.5.1.1 GW.5.1.1 +sars#119 GW.5.1.1 GW.5.1.1+GK.1.6+GK.1.6.1 +sars#119 GK.1.6 GW.5.1.1+GK.1.6+GK.1.6.1 +sars#119 GK.1.6.1 GW.5.1.1+GK.1.6+GK.1.6.1 sars#120 DV.7.1.1 DV.7.1.1 sars#121 GK.2.3 GK.2.3 sars#122 JG.3 JG.3 @@ -1024,3 +1029,91 @@ sars#137 FL.36 FL.36 sars#138 FL.15.2 FL.15.2 sars#139 FL.15.1 FL.15.1+FL.15.1.1 sars#139 FL.15.1.1 FL.15.1+FL.15.1.1 +sars#140 GJ.5 GJ.5+GJ.5.1 +sars#140 GJ.5.1 GJ.5+GJ.5.1 +sars#141 JE.1.1 JE.1.1 +sars#142 GJ.1.2.6 GJ.1.2.6+GJ.1.2.7 +sars#142 GJ.1.2.7 GJ.1.2.6+GJ.1.2.7 +sars#143 JD.1.1.3 JD.1.1.3 +sars#144 JQ.1 JQ.1 +sars#146 BA.2.86.2 BA.2.86.2 +sars#147 JN.2 JN.2 +sars#148 JN.3 JN.3 +sars#149 GK.2.4 GK.2.4 +sars#150 EG.6.1.2 EG.6.1.2 +sars#151 HV.1.1 HV.1.1 +sars#152 HV.1.3 HV.1.3 +sars#154 HK.13.2 HK.13.2 +sars#156 HK.1.2 HK.1.2 +sars#157 EG.5.1.8 EG.5.1.8+HK.13+HK.1.1+HK.14+JR.1.1+HK.2.1+HK.11.1 +sars#157 HK.13 EG.5.1.8+HK.13+HK.1.1+HK.14+JR.1.1+HK.2.1+HK.11.1 +sars#157 HK.1.1 EG.5.1.8+HK.13+HK.1.1+HK.14+JR.1.1+HK.2.1+HK.11.1 +sars#157 HK.14 EG.5.1.8+HK.13+HK.1.1+HK.14+JR.1.1+HK.2.1+HK.11.1 +sars#157 JR.1.1 EG.5.1.8+HK.13+HK.1.1+HK.14+JR.1.1+HK.2.1+HK.11.1 +sars#157 HK.2.1 EG.5.1.8+HK.13+HK.1.1+HK.14+JR.1.1+HK.2.1+HK.11.1 +sars#157 HK.11.1 EG.5.1.8+HK.13+HK.1.1+HK.14+JR.1.1+HK.2.1+HK.11.1 +sars#158 HK.15 HK.15 +sars#159 GA.4.3 GA.4.3 +sars#160 HK.16 HK.16 +sars#161 HK.18 HK.18 +sars#162 XBB.2.3.15 XBB.2.3.15+JS.2 +sars#162 JS.2 XBB.2.3.15+JS.2 +sars#163 GW.5.3 GW.5.3+GW.5.3.1 +sars#163 GW.5.3.1 GW.5.3+GW.5.3.1 +sars#164 JT.1 JT.1 +sars#165 XBC.1.6.5 XBC.1.6.5 +sars#167 GK.6 GK.6 +sars#168 GK.7 GK.7 +sars#170 GK.8 GK.8+GK.8.1 +sars#170 GK.8.1 GK.8+GK.8.1 +sars#171 GK.5 GK.5+GK.5.1 +sars#171 GK.5.1 GK.5+GK.5.1 +sars#172 GK.10 GK.10 +sars#173 XBB.2.3.18 XBB.2.3.18 +sars#174 GJ.6 GJ.6 +sars#175 GJ.7 GJ.7 +sars#176 JV.1 JV.1 +sars#177 JC.2 JC.2 +sars#178 JC.5 JC.5 +sars#179 FL..30.1 FL..30.1 +sars#180 FL.13.4 FL.13.4+FL.13.4.1 +sars#180 FL.13.4.1 FL.13.4+FL.13.4.1 +sars#181 FL.13.5 FL.13.5 +sars#182 DV.7.1.3 DV.7.1.3 +sars#183 DV.7.1.5 DV.7.1.5 +sars#184 XCT XCT +sars#185 FL.23.2 FL.23.2 +sars#186 XCU XCU +sars#187 HH.2.1 HH.2.1+HH.6+HH.8.1 +sars#187 HH.6 HH.2.1+HH.6+HH.8.1 +sars#187 HH.8.1 HH.2.1+HH.6+HH.8.1 +sars#188 JY.1 JY.1 +sars#189 JG.3.1 JG.3.1 +sars#190 HK.3.4 HK.3.4 +sars#191 HK.3.5 HK.3.5 +sars#192 HK.3.6 HK.3.6 +sars#193 HK.3.7 HK.3.7 +sars#194 GA.7.1 GA.7.1 +sars#195 XCV XCV +sars#196 XBB.2.3.20 XBB.2.3.20 +sars#197 JZ.1 JZ.1 +sars#198 FD.5.1 FD.5.1 +sars#199 KA.1 KA.1 +sars#200 GN.1.3 GN.1.3 +sars#201 XCY XCY +sars#202 XCZ XCZ +sars#203 FE.1.1.5 FE.1.1.5 +sars#204 HN.5 HN.5 +sars#206 HN.3.1 HN.3.1 +sars#207 FY.8 FY.8 +sars#208 FY.6.2 FY.6.2 +sars#209 FY.1.4 FY.1.4 +sars#211 FY.5.1 FY.5.1 +sars#212 FY.5.1.1 FY.5.1.1 +sars#213 HN.2 HN.2+HN.2.1 +sars#213 HN.2.1 HN.2+HN.2.1 +sars#214 GA.4.1.3 GA.4.1.3 +sars#215 XDA XDA +sars#216 XDB XDB +sars#217 XDC XDC +sars#218 HH.5 HH.5 diff --git a/autoref/missing_refs.txt b/autoref/missing_refs.txt index 84a99104..b9eefea7 100755 --- a/autoref/missing_refs.txt +++ b/autoref/missing_refs.txt @@ -1,23 +1,80 @@ -DV.7.1.1 sars-cov-2-variants/lineage-proposals#732 -DV.7.1.2 #2258 -JP.1 sars-cov-2-variants/lineage-proposals#655 -CH.1.1.32 #2150 -GK.2.1.1 sars-cov-2-variants/lineage-proposals#716 -GK.2.3 sars-cov-2-variants/lineage-proposals#813 -GK.4 #2276 -JD.1.1.1 sars-cov-2-variants/lineage-proposals#864 -JD.1.1.2 sars-cov-2-variants/lineage-proposals#754 -FL.1.6 sars-cov-2-variants/lineage-proposals#59 -FL.15.1.1 sars-cov-2-variants/lineage-proposals#646 -FL.15.2 sars-cov-2-variants/lineage-proposals#578 -FL.20.2 sars-cov-2-variants/lineage-proposals#571 -FL.32 sars-cov-2-variants/lineage-proposals#719 -FL.32.1 sars-cov-2-variants/lineage-proposals#719 -FL.33.1 sars-cov-2-variants/lineage-proposals#828 -HK.3.3 sars-cov-2-variants/lineage-proposals#744 -JG.3 #2231 -EG.5.1.8 sars-cov-2-variants/lineage-proposals#537 -EG.6.1.1 sars-cov-2-variants/lineage-proposals#546 -JM.1 sars-cov-2-variants/lineage-proposals#569 -GW.5 #2142 -GS.5 sars-cov-2-variants/lineage-proposals#768 +JV.1 sars-cov-2-variants/lineage-proposals#760 +DV.7.1.3 sars-cov-2-variants/lineage-proposals#851 +DV.7.1.5 sars-cov-2-variants/lineage-proposals#729 +JN.3 sars-cov-2-variants/lineage-proposals#892 +JQ.1 sars-cov-2-variants/lineage-proposals#906 +JH.2 #2068 +FD.5.1 sars-cov-2-variants/lineage-proposals#385 +GK.1.2.1 #2314 +GK.1.6 sars-cov-2-variants/lineage-proposals#643 +GK.1.6.1 sars-cov-2-variants/lineage-proposals#643 +GK.2.4 sars-cov-2-variants/lineage-proposals#823 +GK.5 sars-cov-2-variants/lineage-proposals#736 +GK.5.1 sars-cov-2-variants/lineage-proposals#736 +GK.6 sars-cov-2-variants/lineage-proposals#715 +GK.7 sars-cov-2-variants/lineage-proposals#907 +GK.8 sars-cov-2-variants/lineage-proposals#909 +GK.8.1 sars-cov-2-variants/lineage-proposals#909 +GK.10 sars-cov-2-variants/lineage-proposals#761 +GN.1.3 sars-cov-2-variants/lineage-proposals#816 +JD.1.1.3 sars-cov-2-variants/lineage-proposals#896 +KA.1 sars-cov-2-variants/lineage-proposals#822 +JZ.1 sars-cov-2-variants/lineage-proposals#224 +HN.2 sars-cov-2-variants/lineage-proposals#676 +HN.2.1 sars-cov-2-variants/lineage-proposals#676 +HN.3.1 sars-cov-2-variants/lineage-proposals#383 +HN.5 sars-cov-2-variants/lineage-proposals#936 +FL.13.4 sars-cov-2-variants/lineage-proposals#638 +FL.13.4.1 sars-cov-2-variants/lineage-proposals#638 +FL.13.5 sars-cov-2-variants/lineage-proposals#692 +FL.23.2 sars-cov-2-variants/lineage-proposals#381 +HK.1.2 sars-cov-2-variants/lineage-proposals#631 +HK.2.1 sars-cov-2-variants/lineage-proposals#537 +HK.3.4 sars-cov-2-variants/lineage-proposals#764 +HK.3.5 sars-cov-2-variants/lineage-proposals#865 +HK.3.6 sars-cov-2-variants/lineage-proposals#809 +HK.3.7 sars-cov-2-variants/lineage-proposals#793 +HK.11.1 sars-cov-2-variants/lineage-proposals#537 +HK.13 sars-cov-2-variants/lineage-proposals#537 +HK.13.2 sars-cov-2-variants/lineage-proposals#943 +HK.14 sars-cov-2-variants/lineage-proposals#537 +HK.15 sars-cov-2-variants/lineage-proposals#588 +HK.16 sars-cov-2-variants/lineage-proposals#841 +HK.18 sars-cov-2-variants/lineage-proposals#800 +JG.3.1 sars-cov-2-variants/lineage-proposals#829 +HV.1.1 sars-cov-2-variants/lineage-proposals#866 +HV.1.3 sars-cov-2-variants/lineage-proposals#924 +JR.1.1 sars-cov-2-variants/lineage-proposals#537 +EG.6.1.2 sars-cov-2-variants/lineage-proposals#826 +GA.4.1.3 sars-cov-2-variants/lineage-proposals#968 +GA.4.3 sars-cov-2-variants/lineage-proposals#908 +GA.7.1 sars-cov-2-variants/lineage-proposals#755 +FE.1.1.5 sars-cov-2-variants/lineage-proposals#556 +GW.5.3 sars-cov-2-variants/lineage-proposals#815 +GW.5.3.1 sars-cov-2-variants/lineage-proposals#815 +FY.1.4 sars-cov-2-variants/lineage-proposals#165 +FY.5.1 sars-cov-2-variants/lineage-proposals#929 +FY.5.1.1 sars-cov-2-variants/lineage-proposals#790 +FY.6.2 sars-cov-2-variants/lineage-proposals#637 +FY.8 sars-cov-2-variants/lineage-proposals#635 +JC.2 sars-cov-2-variants/lineage-proposals#961 +JC.5 sars-cov-2-variants/lineage-proposals#629 +HH.2.1 sars-cov-2-variants/lineage-proposals#236 +HH.5 sars-cov-2-variants/lineage-proposals#438 +HH.6 sars-cov-2-variants/lineage-proposals#236 +HH.8.1 sars-cov-2-variants/lineage-proposals#236 +JE.1.1 sars-cov-2-variants/lineage-proposals#827 +GJ.1.2.6 sars-cov-2-variants/lineage-proposals#726 +GJ.1.2.7 sars-cov-2-variants/lineage-proposals#726 +GJ.5 sars-cov-2-variants/lineage-proposals#429 +GJ.5.1 sars-cov-2-variants/lineage-proposals#429 +GJ.6 sars-cov-2-variants/lineage-proposals#675 +GJ.7 sars-cov-2-variants/lineage-proposals#439 +XBB.2.3.15 sars-cov-2-variants/lineage-proposals#722 +JS.2 sars-cov-2-variants/lineage-proposals#722 +XBB.2.3.18 sars-cov-2-variants/lineage-proposals#738 +JY.1 sars-cov-2-variants/lineage-proposals#731 +XBC.1.6.5 sars-cov-2-variants/lineage-proposals#479 +JT.1 sars-cov-2-variants/lineage-proposals#203 +XCZ sars-cov-2-variants/lineage-proposals#839 +XDB sars-cov-2-variants/lineage-proposals#969 diff --git a/lineage_notes.txt b/lineage_notes.txt index 18cb6e40..85f06314 100644 --- a/lineage_notes.txt +++ b/lineage_notes.txt @@ -880,11 +880,11 @@ DV.7 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7, S:L858I, ORF1a:A3548V, England, fr DV.7.1 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7.1, S:L455F, S:F456L(T22928C), Spain/Austria, from sars-cov-2-variants/lineage-proposals#135 DV.7.1.1 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7.1.1, S:K679R, on branch ORF1a:K3353R Spain, from sars-cov-2-variants/lineage-proposals#732 DV.7.1.2 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7.1.2, ORF1a:A4162V, Spain/England, from #2258 -JV.1 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7.1.2.1, S:G485R, France +JV.1 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7.1.2.1, S:G485R, France, from sars-cov-2-variants/lineage-proposals#760 JV.2 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7.1.2.2, S:V772I, France/Spain -DV.7.1.3 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7.1.3, S:A262S, on branch ORF1a:K3353R +DV.7.1.3 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7.1.3, S:A262S, on branch ORF1a:K3353R, from sars-cov-2-variants/lineage-proposals#851 DV.7.1.4 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7.1.4, G28001T, on branch ORF1a:K3353R -DV.7.1.5 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7.1.5, N:T135A, Spain +DV.7.1.5 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7.1.5, N:T135A, Spain, from sars-cov-2-variants/lineage-proposals#729 DV.7.2 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7.2, C703T, England DV.8 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.8, S:Q613H, C8299T, C19602T, Sweden CH.1.1.2 Alias of B.1.1.529.2.75.3.4.1.1.1.1.2, defined by S:T883I, ORF1a:Y1846C, ORF1a:G2294S on T27576C branch @@ -1043,10 +1043,10 @@ BA.2.86 Alias of B.1.1.529.2.86, from #2183 BA.2.86.1 Alias of B.1.1.529.2.86.1, ORF1a:K1973R, C12815T, mainly Europe, from #2236 JN.1 Alias of B.1.1.529.2.86.1.1, S:L455S, ORF1a:R3821K, ORF7b:F19L, Europe JN.2 Alias of B.1.1.529.2.86.1.2, ORF1a:Y621C, Europe/North America，from #2284 -JN.3 Alias of B.1.1.529.2.86.1.3, ORF1a:T2087I, Europe +JN.3 Alias of B.1.1.529.2.86.1.3, ORF1a:T2087I, Europe, from sars-cov-2-variants/lineage-proposals#892 BA.2.86.2 Alias of B.1.1.529.2.86.2, ORF7a:E22D, South Africa/Botswana，from sars-cov-2-variants/lineage-proposals/issues/756 BA.2.86.3 Alias of B.1.1.529.2.86.3, C222T, C1960T, T12775C, South Africa -JQ.1 Alias of B.1.1.529.2.86.3.1, S:T95I, Denmark/France/South Africa +JQ.1 Alias of B.1.1.529.2.86.3.1, S:T95I, Denmark/France/South Africa, from sars-cov-2-variants/lineage-proposals#906 BA.3 Alias of B.1.1.529.3, from #367 BA.3.1 Alias of B.1.1.529.3.1, mainly found in Poland, from #540 BA.4 Alias of B.1.1.529.4, from #517 @@ -1506,7 +1506,7 @@ FB.1 Alias of B.1.1.529.5.3.1.1.1.1.1.2.1.1 S:D253G, Singapore/Taiwan/Japan, fro FB.2 Alias of B.1.1.529.5.3.1.1.1.1.1.2.1.2 S:478R, USA/South Korea/Mongolia BQ.1.2.2 Alias of B.1.1.529.5.3.1.1.1.1.1.2.2, S:K147E, S:R346T, S:V445A, West Africa, from #1861 JH.1 Alias of B.1.1.529.5.3.1.1.1.1.1.2.2.1, S:K182E, S:486A, S:S494P, S:E554K, from #2068 -JH.2 Alias of B.1.1.529.5.3.1.1.1.1.1.2.2.2, S:A484K, S:V486A, USA/Canada/Finland, from sars-cov-2-variants/lineage-proposals#650 +JH.2 Alias of B.1.1.529.5.3.1.1.1.1.1.2.2.2, S:A484K, S:V486A, USA/Canada/Finland, from sars-cov-2-variants/lineage-proposals#650, from #2068 BQ.1.2.3 Alias of B.1.1.529.5.3.1.1.1.1.1.2.3, E:V24L, Canada BQ.1.3 Alias of B.1.1.529.5.3.1.1.1.1.1.3, found globally, defined by S:E619Q, from #1082 BQ.1.3.1 Alias of B.1.1.529.5.3.1.1.1.1.1.3.1, C2509T, Spain @@ -2725,7 +2725,7 @@ FD.3 Alias of XBB.1.5.15.3, S:A348S, T8503C, USA/Finland/Japan FD.4 Alias of XBB.1.5.15.4, ORF1a:L4191F, USA FD.4.1 Alias of XBB.1.5.15.4.1, ORF1a:T4355I, ORF1b:I2634F FD.5 Alias of XBB.1.5.15.5, ORF10:A8V, Peru -FD.5.1 Alias of XBB.1.5.15.5.1, S:F456L (T22928C), S:N185D, Peru +FD.5.1 Alias of XBB.1.5.15.5.1, S:F456L (T22928C), S:N185D, Peru, from sars-cov-2-variants/lineage-proposals#385 XBB.1.5.16 T14766C, USA FG.1 Alias of XBB.1.5.16.1, S:T284I, S:R403K, S:L513F, USA, from #1751 FG.2 Alias of XBB.1.5.16.2, S:D178N, USA/Europe @@ -2827,12 +2827,12 @@ GK.1 Alias of XBB.1.5.70.1, S:S704L, Brazil, from #2025 GK.1.1 Alias of XBB.1.5.70.1.1, S:T573I, Brazil GK.1.1.1 Alias of XBB.1.5.70.1.1.1, C28432T GK.1.2 Alias of XBB.1.5.70.1.2, S:N185D, Brazil, from #2093 -GK.1.2.1 Alias of XBB.1.5.70.1.2.1, S:A475V, ORF1a:D147G, ORF1a:D2592Y, ORF1a:T4175I, ORF1b:N1426K, Brazil/Colombia +GK.1.2.1 Alias of XBB.1.5.70.1.2.1, S:A475V, ORF1a:D147G, ORF1a:D2592Y, ORF1a:T4175I, ORF1b:N1426K, Brazil/Colombia, from #2314 GK.1.3 Alias of XBB.1.5.70.1.3, ORF1a:E633A, ORF1b:D1130G, USA/Canada, from sars-cov-2-variants/lineage-proposals#179 GK.1.4 Alias of XBB.1.5.70.1.4, S:478R, S:98F, Brazil, from sars-cov-2-variants/lineage-proposals#504 GK.1.5 Alias of XBB.1.5.70.1.5, S:F186L, ORF1a:T1597I, Brazil -GK.1.6 Alias of XBB.1.5.70.1.6, ORF3a:V50I, Colombia -GK.1.6.1 Alias of XBB.1.5.70.1.6.1, S:A475V, ORF1a:I114V, Colombia +GK.1.6 Alias of XBB.1.5.70.1.6, ORF3a:V50I, Colombia, from sars-cov-2-variants/lineage-proposals#643 +GK.1.6.1 Alias of XBB.1.5.70.1.6.1, S:A475V, ORF1a:I114V, Colombia, from sars-cov-2-variants/lineage-proposals#643 GK.1.7 Alias of XBB.1.5.70.1.7, S:F186L, T11695C, Europe GK.1.8 Alias of XBB.1.5.70.1.8, S:E554K, S:A475V, Brazil GK.1.9 Alias of XBB.1.5.70.1.9, C17010T, USA @@ -2841,19 +2841,19 @@ GK.2.1 Alias of XBB.1.5.70.2.1, ORF1a:L624I, ORF1a:L3641S, ORF1b:S763C GK.2.1.1 Alias of XBB.1.5.70.2.1.1, S:P1162S, from sars-cov-2-variants/lineage-proposals#716 GK.2.2 Alias of XBB.1.5.70.2.2, S:E554D, from sars-cov-2-variants/lineage-proposals#470 GK.2.3 Alias of XBB.1.5.70.2.3, S:K356T, England, from sars-cov-2-variants/lineage-proposals#813 -GK.2.4 Alias of XBB.1.5.70.2.4, S:K356T, USA-NY +GK.2.4 Alias of XBB.1.5.70.2.4, S:K356T, USA-NY, from sars-cov-2-variants/lineage-proposals#823 GK.3 Alias of XBB.1.5.70.3, ORF1a:A876S, Brazil/USA/Canada GK.3.1 Alias of XBB.1.5.70.3.1, S:A475V, USA GK.3.2 Alias of XBB.1.5.70.3.2, S:T572I, USA, from #2272 GK.4 Alias of XBB.1.5.70.4, S:A475V, ORF1a:T2859I, ORF1ab:T4711I, from #2276 -GK.5 Alias of XBB.1.5.70.5, S:G181V, Brazil -GK.5.1 Alias of XBB.1.5.70.5.1, S:E180K -GK.6 Alias of XBB.1.5.70.6, S:N556K, S:E583A -GK.7 Alias of XBB.1.5.70.7, N:D3G -GK.8 Alias of XBB.1.5.70.8, ORF6:E55Q, Brazil -GK.8.1 Alias of XBB.1.5.70.8.1, S:N185I, S:A475V +GK.5 Alias of XBB.1.5.70.5, S:G181V, Brazil, from sars-cov-2-variants/lineage-proposals#736 +GK.5.1 Alias of XBB.1.5.70.5.1, S:E180K, from sars-cov-2-variants/lineage-proposals#736 +GK.6 Alias of XBB.1.5.70.6, S:N556K, S:E583A, from sars-cov-2-variants/lineage-proposals#715 +GK.7 Alias of XBB.1.5.70.7, N:D3G, from sars-cov-2-variants/lineage-proposals#907 +GK.8 Alias of XBB.1.5.70.8, ORF6:E55Q, Brazil, from sars-cov-2-variants/lineage-proposals#909 +GK.8.1 Alias of XBB.1.5.70.8.1, S:N185I, S:A475V, from sars-cov-2-variants/lineage-proposals#909 GK.9 Alias of XBB.1.5.70.9, S:T307S, Brazil -GK.10 Alias of XBB.1.5.70.10, S:E554G, Brazil +GK.10 Alias of XBB.1.5.70.10, S:E554G, Brazil, from sars-cov-2-variants/lineage-proposals#761 GK.11 Alias of XBB.1.5.70.11, S:T883I, Brazil GK.12 Alias of XBB.1.5.70.12, S:T76I, S:N450D, Brazil XBB.1.5.71 S:V511I, Spain @@ -2862,7 +2862,7 @@ XBB.1.5.73 T28271C, USA/Peru GN.1 Alias of XBB.1.5.73.1, S:F456L (22928C), Peru/Costa Rica GN.1.1 Alias of XBB.1.5.73.1.1, ORF1b:A1643V, Peru GN.1.2 Alias of XBB.1.5.73.1.2, S:Q321L -GN.1.3 Alias of XBB.1.5.73.1.3, S:L455F (G22927T) +GN.1.3 Alias of XBB.1.5.73.1.3, S:L455F (G22927T), from sars-cov-2-variants/lineage-proposals#816 GN.2 Alias of XBB.1.5.73.2, ORF3a:A99G, Peru GN.3 Alias of XBB.1.5.73.3, C27143T, Peru GN.4 Alias of XBB.1.5.73.4, ORF1a:Q3966L, Peru @@ -2909,17 +2909,17 @@ JD.1 Alias of XBB.1.5.102.1, S:L455F, S:F456L (T22928C), A14634G, T28282C, Brazi JD.1.1 Alias of XBB.1.5.102.1.1, S:A475V, Brazil/USA/Spain, from #2174 JD.1.1.1 Alias of XBB.1.5.102.1.1.1, S:Y248H, from sars-cov-2-variants/lineage-proposals#864 JD.1.1.2 Alias of XBB.1.5.102.1.1.2, S:E583D, Ireland/UK, from sars-cov-2-variants/lineage-proposals#754 -JD.1.1.3 Alias of XBB.1.5.102.1.1.3, S:T470N, ORF1a:V1584M, France/Denmark +JD.1.1.3 Alias of XBB.1.5.102.1.1.3, S:T470N, ORF1a:V1584M, France/Denmark, from sars-cov-2-variants/lineage-proposals#896 JD.1.2 Alias of XBB.1.5.102.1.2, S:P1162S, Brazil, from sars-cov-2-variants/lineage-proposals#136 JD.2 Alias of XBB.1.5.102.2, ORF1b:H2388Y, G4255A, Brazil JD.2.1 Alias of XBB.1.5.102.2.1, S:E554K, Brazil XBB.1.5.103 S:F456L (T22928C), S:180/184del, S:N185D, ORF1a:T1437I, ORF7b:C41W, T21357C, Argentina, from #2192 -KA.1 Alias of XBB.1.5.103.1, S:E554K, Argentina/France/Spain +KA.1 Alias of XBB.1.5.103.1, S:E554K, Argentina/France/Spain, from sars-cov-2-variants/lineage-proposals#822 XBB.1.5.104 S:K304Q, USA, from #1798 XBB.1.5.105 S:K304N, USA/Europe XBB.1.5.106 S:A623V, ORF1a:V28I, ORF1a:R3542H, Guatemala, from #2270 XBB.1.5.107 C24130T, Argentina/Uruguay/Bolivia -JZ.1 Alias of XBB.1.5.107.1, S:F456L (T22928C), Argentina/Brazil +JZ.1 Alias of XBB.1.5.107.1, S:F456L (T22928C), Argentina/Brazil, from sars-cov-2-variants/lineage-proposals#224 XBB.1.6 USA, S:L216F, S:H146K, from #1428 XBB.1.7 USA-NY, S:V608I XBB.1.8 Denmark, S:186insSGG, C3241T, from #1455 @@ -2934,12 +2934,12 @@ FL.1.4 Alias of XBB.1.9.1.1.4, S:478R, S:Q1208H, Vietnam, from #1985 FL.1.5 Alias of XBB.1.9.1.1.5, S:456L (T22928C), ORF1b:K2557R, from #2036 FL.1.5.1 Alias of XBB.1.9.1.1.5.1, S:478R, from #2036 HN.1 Alias of XBB.1.9.1.1.5.1.1, S:A67S, Dominican Republic, from sars-cov-2-variants/lineage-proposals#408 -HN.2 Alias of XBB.1.9.1.1.5.1.2, ORF1b:P223S -HN.2.1 Alias of XBB.1.9.1.1.5.1.2.1, S:Q836R +HN.2 Alias of XBB.1.9.1.1.5.1.2, ORF1b:P223S, from sars-cov-2-variants/lineage-proposals#676 +HN.2.1 Alias of XBB.1.9.1.1.5.1.2.1, S:Q836R, from sars-cov-2-variants/lineage-proposals#676 HN.3 Alias of XBB.1.9.1.1.5.1.3, S:S494P -HN.3.1 Alias of XBB.1.9.1.1.5.1.3.1, S:D253G +HN.3.1 Alias of XBB.1.9.1.1.5.1.3.1, S:D253G, from sars-cov-2-variants/lineage-proposals#383 HN.4 Alias of XBB.1.9.1.1.5.1.4, ORF1a:T403I -HN.5 Alias of XBB.1.9.1.1.5.1.5, S:E554K +HN.5 Alias of XBB.1.9.1.1.5.1.5, S:E554K, from sars-cov-2-variants/lineage-proposals#936 HN.6 Alias of XBB.1.9.1.1.5.1.6, ORF1a:D1933A FL.1.5.2 Alias of XBB.1.9.1.1.5.2, S:N481K, S:H681R, England/France/Denmark, from sars-cov-2-variants/lineage-proposals#614 FL.1.6 Alias of XBB.1.9.1.1.6, S:N481K, S:Q1208H, from sars-cov-2-variants/lineage-proposals#59 @@ -2989,9 +2989,9 @@ FL.13.2 Alias of XBB.1.9.1.13.2, S:K356T, China, from #2073 FL.13.2.1 Alias of XBB.1.9.1.13.2.1, S:D178H, South Korea FL.13.3 Alias of XBB.1.9.1.13.3, T19110C FL.13.3.1 Alias of XBB.1.9.1.13.3.1, S:E154Q, England -FL.13.4 Alias of XBB.1.9.1.13.4, S:K182E, S:F456L (T22928C), Pakistan -FL.13.4.1 Alias of XBB.1.9.1.13.4.1, S:Q14H, S:A484K -FL.13.5 Alias of XBB.1.9.1.13.5, S:F456L (T22928C), ORF1a:T1000I, ORF1a:L2527M, Chile/Argentina +FL.13.4 Alias of XBB.1.9.1.13.4, S:K182E, S:F456L (T22928C), Pakistan, from sars-cov-2-variants/lineage-proposals#638 +FL.13.4.1 Alias of XBB.1.9.1.13.4.1, S:Q14H, S:A484K, from sars-cov-2-variants/lineage-proposals#638 +FL.13.5 Alias of XBB.1.9.1.13.5, S:F456L (T22928C), ORF1a:T1000I, ORF1a:L2527M, Chile/Argentina, from sars-cov-2-variants/lineage-proposals#692 FL.14 Alias of XBB.1.9.1.14, S:V1122M, C29311T, C22978T, Russia/Finland FL.15 Alias of XBB.1.9.1.15, S:F456L (T22928C), ORF1a:E637K, Vietnam/China/South Korea, from #1994 FL.15.1 Alias of XBB.1.9.1.15.1, S:L455F, ORF1a:T2007I, on ORF1a:S2185N branch, from #2293 @@ -3016,7 +3016,7 @@ FL.21.2 Alias of XBB.1.9.1.21.2, ORF1a:V1019F, ORF1a:I2873M, China, from sars-co FL.22 Alias of XBB.1.9.1.22, ORF1b:I1416V, T24184C FL.23 Alias of XBB.1.9.1.23, ORF1b:V1132I, Philippines FL.23.1 Alias of XBB.1.9.1.23.1, ORF1a:A2584V, C23185T, C8311T -FL.23.2 Alias of XBB.1.9.1.23.2, S:S494P, ORF1a:P2256S, Philippines +FL.23.2 Alias of XBB.1.9.1.23.2, S:S494P, ORF1a:P2256S, Philippines, from sars-cov-2-variants/lineage-proposals#381 FL.23.2.1 Alias of XBB.1.9.1.23.2.1, S:P521T, Philippines FL.24 Alias of XBB.1.9.1.24, S:Q613H, S:A688V, from sars-cov-2-variants/lineage-proposals#284 FL.25 Alias of XBB.1.9.1.25, S:E554K, USA/England, from #2040 @@ -3065,17 +3065,17 @@ EG.5 Alias of XBB.1.9.2.5, S:F456L (T22930A), ORF1a:A690V, ORF1a:A3143V, Indones EG.5.1 Alias of XBB.1.9.2.5.1, S:Q52H EG.5.1.1 Alias of XBB.1.9.2.5.1.1, China, from #2020 HK.1 Alias of XBB.1.9.2.5.1.1.1, S:G257V, China, from sars-cov-2-variants/lineage-proposals#359 -HK.1.2 Alias of XBB.1.9.2.5.1.1.1.2, S:455F (G22927C), S:T307I, China/New Zealand +HK.1.2 Alias of XBB.1.9.2.5.1.1.1.2, S:455F (G22927C), S:T307I, China/New Zealand , from sars-cov-2-variants/lineage-proposals#631 HK.2 Alias of XBB.1.9.2.5.1.1.2, S:Q14H, China, from sars-cov-2-variants/lineage-proposals#432 -HK.2.1 Alias of XBB.1.9.2.5.1.1.2.1, S:L455F, Singapore +HK.2.1 Alias of XBB.1.9.2.5.1.1.2.1, S:L455F, Singapore, from sars-cov-2-variants/lineage-proposals#537 HK.3 Alias of XBB.1.9.2.5.1.1.3, S:L455F, China, from sars-cov-2-variants/lineage-proposals#414 HK.3.1 Alias of XBB.1.9.2.5.1.1.3.1, S:F157L, China, from #2193 HK.3.2 Alias of XBB.1.9.2.5.1.1.3.2, S:Q14K, China，from sars-cov-2-variants/lineage-proposals#730 HK.3.3 Alias of XBB.1.9.2.5.1.1.3.3, S:S256L, N:P364L, China/Singapore, from sars-cov-2-variants/lineage-proposals#744 -HK.3.4 Alias of XBB.1.9.2.5.1.1.3.4, S:P809S -HK.3.5 Alias of XBB.1.9.2.5.1.1.3.5, S:P174S, Singapore -HK.3.6 Alias of XBB.1.9.2.5.1.1.3.6, S:G181R, China -HK.3.7 Alias of XBB.1.9.2.5.1.1.3.7, S:V171I, Singapore/China +HK.3.4 Alias of XBB.1.9.2.5.1.1.3.4, S:P809S, from sars-cov-2-variants/lineage-proposals#764 +HK.3.5 Alias of XBB.1.9.2.5.1.1.3.5, S:P174S, Singapore, from sars-cov-2-variants/lineage-proposals#865 +HK.3.6 Alias of XBB.1.9.2.5.1.1.3.6, S:G181R, China, from sars-cov-2-variants/lineage-proposals#809 +HK.3.7 Alias of XBB.1.9.2.5.1.1.3.7, S:V171I, Singapore/China, from sars-cov-2-variants/lineage-proposals#793 HK.4 Alias of XBB.1.9.2.5.1.1.4, S:T883I, China HK.5 Alias of XBB.1.9.2.5.1.1.5, S:Q677H, China HK.6 Alias of XBB.1.9.2.5.1.1.6, S:D253G, ORF1a:A1923T, UK/USA, from #2184 @@ -3083,32 +3083,32 @@ HK.7 Alias of XBB.1.9.2.5.1.1.7, S:N148T, China HK.8 Alias of XBB.1.9.2.5.1.1.8, S:L455F, on C11779T branch, China, from #2230 HK.9 Alias of XBB.1.9.2.5.1.1.9, S:R190K, on C11779T branch, England, from sars-cov-2-variants/lineage-proposals#564 HK.11 Alias of XBB.1.9.2.5.1.1.11, S:G184S, China/England/SouthKorea, from #2255 -HK.11.1 Alias of XBB.1.9.2.5.1.1.11.1, S:L455F (G22927T) +HK.11.1 Alias of XBB.1.9.2.5.1.1.11.1, S:L455F (G22927T), from sars-cov-2-variants/lineage-proposals#537 HK.12 Alias of XBB.1.9.2.5.1.1.12, S:K356T, China/Singapore -HK.13 Alias of XBB.1.9.2.5.1.1.13, S:L455F (G22927C), China +HK.13 Alias of XBB.1.9.2.5.1.1.13, S:L455F (G22927C), China, from sars-cov-2-variants/lineage-proposals#537 HK.13.1 Alias of XBB.1.9.2.5.1.1.13.1, C13378T, A24604G -HK.13.2 Alias of XBB.1.9.2.5.1.1.13.2, S:F797L, S:D1153H -HK.14 Alias of XBB.1.9.2.5.1.1.14, S:L455F (G22927C), on C11779T branch, China -HK.15 Alias of XBB.1.9.2.5.1.1.15, S:A262T, on C11779T branch -HK.16 Alias of XBB.1.9.2.5.1.1.16, N:P67S, S:A684V, S:V1264L +HK.13.2 Alias of XBB.1.9.2.5.1.1.13.2, S:F797L, S:D1153H, from sars-cov-2-variants/lineage-proposals#943 +HK.14 Alias of XBB.1.9.2.5.1.1.14, S:L455F (G22927C), on C11779T branch, China, from sars-cov-2-variants/lineage-proposals#537 +HK.15 Alias of XBB.1.9.2.5.1.1.15, S:A262T, on C11779T branch, from sars-cov-2-variants/lineage-proposals#588 +HK.16 Alias of XBB.1.9.2.5.1.1.16, N:P67S, S:A684V, S:V1264L, from sars-cov-2-variants/lineage-proposals#841 HK.17 Alias of XBB.1.9.2.5.1.1.17, S:S494P, China -HK.18 Alias of XBB.1.9.2.5.1.1.18, S:L452R +HK.18 Alias of XBB.1.9.2.5.1.1.18, S:L452R, from sars-cov-2-variants/lineage-proposals#800 HK.19 Alias of XBB.1.9.2.5.1.1.19, S:F157L EG.5.1.2 Alias of XBB.1.9.2.5.1.2, Japan, ORF1b:V1644I, from sars-cov-2-variants/lineage-proposals#301 EG.5.1.3 Alias of XBB.1.9.2.5.1.3, ORF1a:R542C, C22570T, from sars-cov-2-variants/lineage-proposals#222 JG.1 Alias of XBB.1.9.2.5.1.3.1, S:T732I, France, from #2218 JG.2 Alias of XBB.1.9.2.5.1.3.2, S:G75V, Europe, from #2249 JG.3 Alias of XBB.1.9.2.5.1.3.3, S:L455F, S:S704L, Europe, from #2231 -JG.3.1 Alias of XBB.1.9.2.5.1.3.3.1, S:T307I +JG.3.1 Alias of XBB.1.9.2.5.1.3.3.1, S:T307I, from sars-cov-2-variants/lineage-proposals#829 JG.4 Alias of XBB.1.9.2.5.1.3.4, C1684T, Europe EG.5.1.4 Alias of XBB.1.9.2.5.1.4, ORF1b:K2557R, from #2117 JJ.1 Alias of XBB.1.9.2.5.1.4.1, S:L455F, ORF3a:I47V, China/Japan, from #2208 EG.5.1.5 Alias of XBB.1.9.2.5.1.5, ORF1a:L3293I, ORF1b:T1274I, ORF1b:L2349V, Portugal EG.5.1.6 Alias of XBB.1.9.2.5.1.6, S:F157L, ORF1a:S1857L, USA, from sars-cov-2-variants/lineage-proposals#394 HV.1 Alias of XBB.1.9.2.5.1.6.1, S:L452R, USA -HV.1.1 Alias of XBB.1.9.2.5.1.6.1.1, S:K444T, on ORF1a:T4083M branch, USA +HV.1.1 Alias of XBB.1.9.2.5.1.6.1.1, S:K444T, on ORF1a:T4083M branch, USA, from sars-cov-2-variants/lineage-proposals#866 HV.1.2 Alias of XBB.1.9.2.5.1.6.1.2, S:S514F, on ORF1a:T4083M branch, USA -HV.1.3 Alias of XBB.1.9.2.5.1.6.1.3, S:493L, USA +HV.1.3 Alias of XBB.1.9.2.5.1.6.1.3, S:493L, USA, from sars-cov-2-variants/lineage-proposals#924 HV.1.4 Alias of XBB.1.9.2.5.1.6.1.4, S:A1078S, USA EG.5.1.7 Alias of XBB.1.9.2.5.1.7, S:K278N EG.5.1.8 Alias of XBB.1.9.2.5.1.8, S:L455F, China (most of it with C12100G), from sars-cov-2-variants/lineage-proposals#537 @@ -3116,7 +3116,7 @@ EG.5.1.9 Alias of XBB.1.9.2.5.1.9, S:L176F (on ORF1a:D982G branch) EG.5.1.10 Alias of XBB.1.9.2.5.1.10, ORF1a:I3758V, Portugal/Spain EG.5.1.11 Alias of XBB.1.9.2.5.1.11, S:K182Q, Indonesia JR.1 Alias of XBB.1.9.2.5.1.11.1, S:478R, ORF3a:Y91C, Indonesia -JR.1.1 Alias of XBB.1.9.2.5.1.11.1.1, S:L455F (G22927C) +JR.1.1 Alias of XBB.1.9.2.5.1.11.1.1, S:L455F (G22927C), from sars-cov-2-variants/lineage-proposals#537 EG.5.2 Alias of XBB.1.9.2.5.2, N:L161F EG.5.2.1 Alias of XBB.1.9.2.5.2.1, S:S704L, USA, from sars-cov-2-variants/lineage-proposals#189 EG.5.2.2 Alias of XBB.1.9.2.5.2.2, ORF1b:T239I, China @@ -3124,7 +3124,7 @@ EG.5.2.3 Alias of XBB.1.9.2.5.2.3, S:S704L, S:N1178D, Austria/USA, from sars-cov EG.6 Alias of XBB.1.9.2.6, C1684T, Israel EG.6.1 Alias of XBB.1.9.2.6.1, S:456L (T22928C), Israel/Japan/Canada, from #1950 EG.6.1.1 Alias of XBB.1.9.2.6.1.1, S:484K, S:L242I, from sars-cov-2-variants/lineage-proposals#546 -EG.6.1.2 Alias of XBB.1.9.2.6.1.2, S:V705I, Israel +EG.6.1.2 Alias of XBB.1.9.2.6.1.2, S:V705I, Israel, from sars-cov-2-variants/lineage-proposals#826 EG.7 Alias of XBB.1.9.2.7, S:R403K, S:L513F, ORF1a:N2531S, Germany/England EG.8 Alias of XBB.1.9.2.8, ORF1a:S2303F, Europe EG.9 Alias of XBB.1.9.2.9, S:403K, ORF1a:T1474I, ORF1b:N969S, from sars-cov-2-variants/lineage-proposals#280 @@ -3223,14 +3223,14 @@ GA.4 Alias of XBB.1.17.1.4, S:K356T, ORF1a:N1080D, ORF1a:S2553F, Nigeria, from s GA.4.1 Alias of XBB.1.17.1.4.1, S:K478R, S:S704L, S:E554K, USA/Qatar, from sars-cov-2-variants/lineage-proposals#661 GA.4.1.1 Alias of XBB.1.17.1.4.1.1, S:Q675H GA.4.1.2 Alias of XBB.1.17.1.4.1.2, S:T572I, England -GA.4.1.3 Alias of XBB.1.17.1.4.1.3, S:185insLAG, S:F186D, N:K370N, ORF1a:V1339I +GA.4.1.3 Alias of XBB.1.17.1.4.1.3, S:185insLAG, S:F186D, N:K370N, ORF1a:V1339I, from sars-cov-2-variants/lineage-proposals#968 GA.4.2 Alias of XBB.1.17.1.4.2, S:K558N, S:G1124S, England/Italy -GA.4.3 Alias of XBB.1.17.1.4.3, S:F186L, S:L585F, Greece/Romania +GA.4.3 Alias of XBB.1.17.1.4.3, S:F186L, S:L585F, Greece/Romania, from sars-cov-2-variants/lineage-proposals#908 GA.5 Alias of XBB.1.17.1.5, T23797C GA.6 Alias of XBB.1.17.1.6, ORF1a:I2138V, G8785A, Ghana GA.6.1 Alias of XBB.1.17.1.6.1, S:478R, A19767G, C29642T GA.7 Alias of XBB.1.17.1.7, ORF1a:T1429I, Cote d'Ivoire -GA.7.1 Alias of XBB.1.17.1.7.1, S:P521S, S:N148T, S:S494P, S:Q218R +GA.7.1 Alias of XBB.1.17.1.7.1, S:P521S, S:N148T, S:S494P, S:Q218R, from sars-cov-2-variants/lineage-proposals#755 GA.7.2 Alias of XBB.1.17.1.7.2, S:H245Y GA.8 Alias of XBB.1.17.1.8, C3619T, C27389T, Congo GA.8.1 Alias of XBB.1.17.1.8.1, S:K182E, S:S494P, S:E554K, France/Belgium @@ -3247,7 +3247,7 @@ HE.2 Alias of XBB.1.18.1.1.1.1.2, S:H1058Y, USA FE.1.1.2 Alias of XBB.1.18.1.1.1.2, S:K1086R, Brazil/USA FE.1.1.3 Alias of XBB.1.18.1.1.1.3, A24775G, China FE.1.1.4 Alias of XBB.1.18.1.1.1.4, A4336G, T24073C, Brazil -FE.1.1.5 Alias of XBB.1.18.1.1.1.5, S:E554K, Brazil +FE.1.1.5 Alias of XBB.1.18.1.1.1.5, S:E554K, Brazil, from sars-cov-2-variants/lineage-proposals#556 FE.1.2 Alias of XBB.1.18.1.1.2, A5488G XBB.1.19 Defined by S:486P, A10042G, T21363C, on C541T, pre ORF8:8* branch, Pakistan, from #1680 XBB.1.19.1 Defined by S:E554K, Pakistan, from #1765 @@ -3260,8 +3260,8 @@ GW.5 Alias of XBB.1.19.1.5, S:K478I, S:L455F, S:F456L(T22928C), Pakistan, from # GW.5.1 Alias of XBB.1.19.1.5.1, ORF3a:W149C, Pakistan GW.5.1.1 Alias of XBB.1.19.1.5.1.1, S:A475V, S:F79S, Pakistan, from #2277 GW.5.2 Alias of XBB.1.19.1.5.2, N:T379I -GW.5.3 Alias of XBB.1.19.1.5.3, T20310C, C28519T -GW.5.3.1 Alias of XBB.1.19.1.5.3.1, S:A475V, S:G184A +GW.5.3 Alias of XBB.1.19.1.5.3, T20310C, C28519T, from sars-cov-2-variants/lineage-proposals#815 +GW.5.3.1 Alias of XBB.1.19.1.5.3.1, S:A475V, S:G184A, from sars-cov-2-variants/lineage-proposals#815 XBB.1.19.2 Defined by S:P521S, Pakistan, from sars-cov-2-variants/lineage-proposals#233 XBB.1.20 Defined by ORF3a:A72V, ORF1a:P4312T on C541T, pre ORF8:8* branch, Malaysia XBB.1.21 Defined by S:486A, ORF1a:K1247R, Turkey, from #1646 @@ -3271,7 +3271,7 @@ FY.1 Alias of XBB.1.22.1.1, Defined by ORF1b:D1782N FY.1.1 Alias of XBB.1.22.1.1.1, S:A83S, Malaysia/Japan FY.1.2 Alias of XBB.1.22.1.1.2, S:T572I, ORF1b:P218L, Europe FY.1.3 Alias of XBB.1.22.1.1.3, S:E583D, South Korea -FY.1.4 Alias of XBB.1.22.1.1.4, S:478R, S:D1084G, USA +FY.1.4 Alias of XBB.1.22.1.1.4, S:478R, S:D1084G, USA, from sars-cov-2-variants/lineage-proposals#165 FY.1.4.1 Alias of XBB.1.22.1.1.4.1, S:I569T, S:N185S, USA FY.2 Alias of XBB.1.22.1.2, S:I197T, ORF1b:S997P, Indonesia, from #1859 FY.2.1 Alias of XBB.1.22.1.2.1, S:A684V, from #2080 @@ -3285,13 +3285,13 @@ FY.4.1.1 Alias of XBB.1.22.1.4.1.1, S:S704L, from sars-cov-2-variants/lineage-pr FY.4.1.2 Alias of XBB.1.22.1.4.1.2, ORF1a:S2926F, Kenya FY.4.2 Alias of XBB.1.22.1.4.2, ORF1a:Y2171F, ORF1b:V2287I, Kenya/USA/Japan, from sars-cov-2-variants/lineage-proposals#487 FY.5 Alias of XBB.1.22.1.5, S:478R, Indonesia, from #1965 -FY.5.1 Alias of XBB.1.22.1.5.1, S:T572I -FY.5.1.1 Alias of XBB.1.22.1.5.1.1, S:M153I, S:F186S, S:S247N +FY.5.1 Alias of XBB.1.22.1.5.1, S:T572I, from sars-cov-2-variants/lineage-proposals#929 +FY.5.1.1 Alias of XBB.1.22.1.5.1.1, S:M153I, S:F186S, S:S247N, from sars-cov-2-variants/lineage-proposals#790 FY.6 Alias of XBB.1.22.1.6, ORF1a:A591V FY.6.1 Alias of XBB.1.22.1.6.1, S:S939F, Japan -FY.6.2 Alias of XBB.1.22.1.6.2, ORF1a:A3143V, ins_S:216:SLQGN, Japan +FY.6.2 Alias of XBB.1.22.1.6.2, ORF1a:A3143V, ins_S:216:SLQGN, Japan, from sars-cov-2-variants/lineage-proposals#637 FY.7 Alias of XBB.1.22.1.7, S:G769A, S:D1168E, from sars-cov-2-variants/lineage-proposals#257 -FY.8 Alias of XBB.1.22.1.8, S:T572I +FY.8 Alias of XBB.1.22.1.8, S:T572I, from sars-cov-2-variants/lineage-proposals#635 FY.9 Alias of XBB.1.22.1.9, S:Q675K, ORF1a:D220E, ORF1a:C667Y, Indonesia from #2053 XBB.1.22.2 Defined by ORF1a:L3829F, C15237T HU.1 Alias of XBB.1.22.2.1, S:K529N, France, from #2136 @@ -3335,10 +3335,10 @@ XBB.1.40 S:Y453F, ORF1a:G519S, ORF1a:L2609F, ORF3a:P104S, Malaysia XBB.1.41 S:L335S, S:R403K, S:486P, possibly common in Central/West Africa, from #1997 XBB.1.41.1 S:478R, Africa, from sars-cov-2-variants/lineage-proposals#150 JC.1 Alias of XBB.1.41.1.1, S:K77R, Japan/Hawaii -JC.2 Alias of XBB.1.41.1.2, S:D339R, ORF1a:V1056L, Greece +JC.2 Alias of XBB.1.41.1.2, S:D339R, ORF1a:V1056L, Greece, from sars-cov-2-variants/lineage-proposals#961 JC.3 Alias of XBB.1.41.1.3, S:N703I, South Africa JC.4 Alias of XBB.1.41.1.4, S:N148S -JC.5 Alias of XBB.1.41.1.5, ORF1a:P1220L, N:H300Y +JC.5 Alias of XBB.1.41.1.5, ORF1a:P1220L, N:H300Y, from sars-cov-2-variants/lineage-proposals#629 JC.6 Alias of XBB.1.41.1.6, S:I1227V, South Africa XBB.1.41.2 S:S494P, USA, from sars-cov-2-variants/lineage-proposals#389 XBB.1.41.3 C17850T, C25276T, C29416G, Africa @@ -3368,35 +3368,35 @@ XBB.2.3.2 S:G184V, ORF1a:R2159W, India, from #1776 HH.1 Alias of XBB.2.3.2.1, ORF1a:T2977I, T20697C HH.1.1 Alias of XBB.2.3.2.1.1, S:G181A, from sars-cov-2-variants/lineage-proposals#183 HH.2 Alias of XBB.2.3.2.2, ORF1a:D48Y -HH.2.1 Alias of XBB.2.3.2.2.1, S:K478R, England/France +HH.2.1 Alias of XBB.2.3.2.2.1, S:K478R, England/France, from sars-cov-2-variants/lineage-proposals#236 HH.3 Alias of XBB.2.3.2.3, S:D1260Y, Japan HH.4 Alias of XBB.2.3.2.4, S:A845S, India -HH.5 Alias of XBB.2.3.2.5, S:K147N, India -HH.6 Alias of XBB.2.3.2.6, S:K478R, ORF1a:D935E, India +HH.5 Alias of XBB.2.3.2.5, S:K147N, India, from sars-cov-2-variants/lineage-proposals#438 +HH.6 Alias of XBB.2.3.2.6, S:K478R, ORF1a:D935E, India, from sars-cov-2-variants/lineage-proposals#236 HH.7 Alias of XBB.2.3.2.7, ORF1a:T1788M, India from #1962 HH.8 Alias of XBB.2.3.2.8, S:Q607R -HH.8.1 Alias of XBB.2.3.2.8.1, S:K478R +HH.8.1 Alias of XBB.2.3.2.8.1, S:K478R, from sars-cov-2-variants/lineage-proposals#236 XBB.2.3.3 S:182N, India/USA, from #1810 GJ.1 Alias of XBB.2.3.3.1, found mainly in China and USA, from #2005 GJ.1.1 Alias of XBB.2.3.3.1.1, S:A222V, N:R319H, ORF1a:V1915I, from sars-cov-2-variants/lineage-proposals#109 GJ.1.2 Alias of XBB.2.3.3.1.2, ORF1b:V1110I, from #2059 GJ.1.2.1 Alias of XBB.2.3.3.1.2.1, S:N450D, Singapore/Thailand/South Korea/USA/Spain, from sars-cov-2-variants/lineage-proposals#446 JE.1 Alias of XBB.2.3.3.1.2.1.1, S:478R, Singapore/SouthKorea/USA, from sars-cov-2-variants/lineage-proposals#597 -JE.1.1 Alias of XBB.2.3.3.1.2.1.1.1, S:Q52R +JE.1.1 Alias of XBB.2.3.3.1.2.1.1.1, S:Q52R, from sars-cov-2-variants/lineage-proposals#827 GJ.1.2.2 Alias of XBB.2.3.3.1.2.2, S:478R, Europe/USA/Australia GJ.1.2.3 Alias of XBB.2.3.3.1.2.3, S:T76I, Japan, on ORF1b:S997P branch GJ.1.2.4 Alias of XBB.2.3.3.1.2.4, S:S255F, on ORF1a:H919Y branch, Japan/USA/South Korea GJ.1.2.5 Alias of XBB.2.3.3.1.2.5, S:I834V, Singapore/South Korea/USA，on ORF1b:S997P branch, from sars-cov-2-variants/lineage-proposals#628 -GJ.1.2.6 Alias of XBB.2.3.3.1.2.6, S:478R, on ORF1b:S997P branch -GJ.1.2.7 Alias of XBB.2.3.3.1.2.7, S:478R, T6511C, on ORF1a:H919Y branch +GJ.1.2.6 Alias of XBB.2.3.3.1.2.6, S:478R, on ORF1b:S997P branch, from sars-cov-2-variants/lineage-proposals#726 +GJ.1.2.7 Alias of XBB.2.3.3.1.2.7, S:478R, T6511C, on ORF1a:H919Y branch, from sars-cov-2-variants/lineage-proposals#726 GJ.1.2.8 Alias of XBB.2.3.3.1.2.8, S:T747I, USA GJ.2 Alias of XBB.2.3.3.2, S:I1114S, Europe GJ.3 Alias of XBB.2.3.3.3, ORF1a:P971S, ORF1b:V2371L GJ.4 Alias of XBB.2.3.3.4, S:M153I, from #1902 -GJ.5 Alias of XBB.2.3.3.5, S:478R, A11794G, C13138T -GJ.5.1 Alias of XBB.2.3.3.5.1, S:S255F, ORF1a:A540V, ORF1a:A3963V -GJ.6 Alias of XBB.2.3.3.6, S:F456L (T22930A), M:G6S, India -GJ.7 Alias of XBB.2.3.3.7, S:E183K, Australia/NewZealand +GJ.5 Alias of XBB.2.3.3.5, S:478R, A11794G, C13138T, from sars-cov-2-variants/lineage-proposals#429 +GJ.5.1 Alias of XBB.2.3.3.5.1, S:S255F, ORF1a:A540V, ORF1a:A3963V, from sars-cov-2-variants/lineage-proposals#429 +GJ.6 Alias of XBB.2.3.3.6, S:F456L (T22930A), M:G6S, India, from sars-cov-2-variants/lineage-proposals#675 +GJ.7 Alias of XBB.2.3.3.7, S:E183K, Australia/NewZealand, from sars-cov-2-variants/lineage-proposals#439 XBB.2.3.4 S:478Q, India, from #1822 GZ.1 Alias of XBB.2.3.4.1, S:F186L, India-GJ XBB.2.3.5 S:K478N, found mainly in USA and India, from #1846 @@ -3437,14 +3437,14 @@ JU.1 Alias of XBB.2.3.12.1, S:N148T, S:Q218R, S:N450D, Georgia/Russia XBB.2.3.13 ORF1a:T1822I, Spain JA.1 Alias of XBB.2.3.13.1, S:F456L (T22928C), Spain/England/France, from sars-cov-2-variants/lineage-proposals#240 XBB.2.3.14 ORF1a:Q998H -XBB.2.3.15 ORF1a:I4308V +XBB.2.3.15 ORF1a:I4308V, from sars-cov-2-variants/lineage-proposals#722 JS.1 Alias of XBB.2.3.15.1, S:S256T -JS.2 Alias of XBB.2.3.15.2, S:T323I +JS.2 Alias of XBB.2.3.15.2, S:T323I, from sars-cov-2-variants/lineage-proposals#722 XBB.2.3.16 S:K478N, USA XBB.2.3.17 S:N450D, USA -XBB.2.3.18 S:F456L (T22930A), S:N450D, S:1231A, India +XBB.2.3.18 S:F456L (T22930A), S:N450D, S:1231A, India, from sars-cov-2-variants/lineage-proposals#738 XBB.2.3.19 S:G184V, ORF1a:P1786L, India -JY.1 Alias of XBB.2.3.19.1, S:E654K, S:K478T (rev), India +JY.1 Alias of XBB.2.3.19.1, S:E654K, S:K478T (rev), India, from sars-cov-2-variants/lineage-proposals#731 JY.1.1 Alias of XBB.2.3.19.1.1, S:T1117K XBB.2.3.20 N:A267S, S:210del, Bangladesh, from sars-cov-2-variants/lineage-proposals#328 XBB.2.4 Defined by S:S486P, Spain/Denmark/Germany, from #1603 and #1518 @@ -3498,9 +3498,9 @@ HW.1.1 Alias of XBC.1.6.3.1.1, S:N460H, T16242A, C22120T, USA/Ireland, from sars HW.1.2 Alias of XBC.1.6.3.1.2, G15957A, Australia HW.1.3 Alias of XBC.1.6.3.1.3, N:T391I, Australia XBC.1.6.4 ORF1a:V1117I, T20286C, Australia -XBC.1.6.5 ORF7a:Q90*, C1594T, C15601T, Australia +XBC.1.6.5 ORF7a:Q90*, C1594T, C15601T, Australia, from sars-cov-2-variants/lineage-proposals#479 XBC.1.6.6 T8707C, C26735T, Australia -JT.1 Alias of XBC.1.6.6.1, S:V445A +JT.1 Alias of XBC.1.6.6.1, S:V445A, from sars-cov-2-variants/lineage-proposals#203 XBC.1.7 S:478R, S:444T, Philippines/Australia/Hong Kong XBC.1.7.1 S:N185S, Philiippines XBC.1.7.2 S:T299I, Australia @@ -3574,9 +3574,9 @@ XCU Recombinant lineage of XBC.1.7.1 and FL.23.2.1 (breakpoint 22329-22577), Phi XCV Recombinant lineage of XBB.1.16.19, EG.5.1.3, XBB.1.16.19 (breakpoints 9694-11749 and 22996-27064), USA/Canada, from #2210 XCW Recombinant lineage of XBB.2.3.20, XBB.1.16.15 (breakpoint 22996-27430), India/USA from #2260 XCY Recombinant lineage of EG.5.1.3, GK.4 (or GK.3.1) (breakpoint 21719-22569), France, from sars-cov-2-variants/lineage-proposals#887 -XCZ Recombinant lineage of EG.5.1.1, GK.1.1 (breakpoint 18492-21718), France/Italy/England +XCZ Recombinant lineage of EG.5.1.1, GK.1.1 (breakpoint 18492-21718), France/Italy/England, from sars-cov-2-variants/lineage-proposals#839 XDA Recombinant lineage of XBB.1.16, HN.5 (breakpoint 22102-22927), from sars-cov-2-variants/lineage-proposals#862 -XDB Recombinant lineage of XBB.1.16.19, non-XBB.1.16/EG.5/XBB.2.3 XBB (breakpoint ~28000, depending on donor), Indonesia +XDB Recombinant lineage of XBB.1.16.19, non-XBB.1.16/EG.5/XBB.2.3 XBB (breakpoint ~28000, depending on donor), Indonesia, from sars-cov-2-variants/lineage-proposals#969 XDC Recombinant lineage of HK.3, XBB.1.16 (breakpoint 22996-27506), China/Singapore, from sars-cov-2-variants/lineage-proposals#902 *A.2.1 Withdrawn: Lineage with sequences predominantly from Panama *A.8 Withdrawn: Indian lineage merged with A.9