update cl/fmt

Illumina · Nov 10, 2015 · d69528d · d69528d
1 parent 621e4bf
commit d69528d
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Showing 2 changed files with 7 additions and 4 deletions.
diff --git a/ChangeLog.txt b/ChangeLog.txt
@@ -1,7 +1,10 @@
+v0.29.1
+- [#22] Add new manta developer guide to source docs
 - [#21] improve fragment size estimation for very short fragments
+- RNA: Improve fusion detection sensitivity
 - MANTA-261 Transfer stable components from Manta windows port
 - MANTA-273/[#14] allow bam index fileanmes in single-extension (Picard) style
--v0.29.0
+v0.29.0
 - MANTA-267/[#12] Support contig names with colons (for HLA contigs in 1kg hg38)
 - MANTA-252 Complete support for CRAM input
 - MANTA-264 Remove samtools from manta dependencies

diff --git a/src/c++/lib/applications/GenerateSVCandidates/SVCandidateAssemblyRefiner.cpp b/src/c++/lib/applications/GenerateSVCandidates/SVCandidateAssemblyRefiner.cpp
@@ -1061,9 +1061,9 @@ SVCandidateAssemblyRefiner(
     _header(header),
     _smallSVAssembler(opt.scanOpt, opt.refineOpt.smallSVAssembleOpt, opt.alignFileOpt,
                       opt.statsFilename, opt.chromDepthFilename, header, counts, opt.isRNA, edgeTracker.remoteTime),
-    _spanningAssembler(opt.scanOpt, 
-        !opt.isRNA ? opt.refineOpt.spanningAssembleOpt : opt.refineOpt.RNAspanningAssembleOpt,
-        opt.alignFileOpt, opt.statsFilename, opt.chromDepthFilename, header, counts, opt.isRNA, edgeTracker.remoteTime),
+    _spanningAssembler(opt.scanOpt,
+                       !opt.isRNA ? opt.refineOpt.spanningAssembleOpt : opt.refineOpt.RNAspanningAssembleOpt,
+                       opt.alignFileOpt, opt.statsFilename, opt.chromDepthFilename, header, counts, opt.isRNA, edgeTracker.remoteTime),
     _smallSVAligner(opt.refineOpt.smallSVAlignScores),
     _largeSVAligner(opt.refineOpt.largeSVAlignScores,opt.refineOpt.largeGapOpenScore),
     _largeInsertEdgeAligner(opt.refineOpt.largeInsertEdgeAlignScores),