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This repository has been archived by the owner on May 15, 2020. It is now read-only.
Available modes:
Germline-WGS - CNV calling of a germline sample from whole genome sequencing data
Somatic-Enrichment - CNV calling of a somatic sample from targeted sequencing data
Somatic-WGS - CNV calling of a somatic sample from whole genome sequencing data
Tumor-normal-enrichment - CNV calling of a tumor/normal pair from targeted sequencing data
SmallPedigree-WGS - CNV calling of a small pedigree from whole genome sequencing data
Options:
-h, --help show this message and exit
-v, --version print version and exit
The text was updated successfully, but these errors were encountered:
Can you please update the readme, it is a bit out of date.
Here: https://github.com/Illumina/canvas
Installation instructions for Linux 64 is as follows:
Install dotnet Build apps - SDK v2.1.403 from here:
https://www.microsoft.com/net/download/dotnet-core/2.1
Pick : .NET Core Binaries: x64
Download Canvas precompiled from here:
https://github.com/Illumina/canvas/releases
Canvas-1.38.0.1554.master_x64.tar.gz
Test that it is working:
~/bin/dotnet2.1/dotnet Canvas.dll
Canvas 1.38.0.1554+master Copyright © Illumina 2018
Usage: Canvas.exe [MODE] [OPTIONS]+
Available modes:
Germline-WGS - CNV calling of a germline sample from whole genome sequencing data
Somatic-Enrichment - CNV calling of a somatic sample from targeted sequencing data
Somatic-WGS - CNV calling of a somatic sample from whole genome sequencing data
Tumor-normal-enrichment - CNV calling of a tumor/normal pair from targeted sequencing data
SmallPedigree-WGS - CNV calling of a small pedigree from whole genome sequencing data
Options:
-h, --help show this message and exit
-v, --version print version and exit
The text was updated successfully, but these errors were encountered: