Skip to content
This repository has been archived by the owner on May 15, 2020. It is now read-only.

Proper installation instructions for Ubuntu x64 are here #99

Closed
MagdalenaZZ opened this issue Oct 10, 2018 · 1 comment
Closed

Proper installation instructions for Ubuntu x64 are here #99

MagdalenaZZ opened this issue Oct 10, 2018 · 1 comment

Comments

@MagdalenaZZ
Copy link

Can you please update the readme, it is a bit out of date.
Here: https://github.com/Illumina/canvas

Installation instructions for Linux 64 is as follows:

Install dotnet Build apps - SDK v2.1.403 from here:
https://www.microsoft.com/net/download/dotnet-core/2.1
Pick : .NET Core Binaries: x64

Download Canvas precompiled from here:
https://github.com/Illumina/canvas/releases
Canvas-1.38.0.1554.master_x64.tar.gz

Test that it is working:
~/bin/dotnet2.1/dotnet Canvas.dll

Canvas 1.38.0.1554+master Copyright © Illumina 2018

Usage: Canvas.exe [MODE] [OPTIONS]+

Available modes:
Germline-WGS - CNV calling of a germline sample from whole genome sequencing data
Somatic-Enrichment - CNV calling of a somatic sample from targeted sequencing data
Somatic-WGS - CNV calling of a somatic sample from whole genome sequencing data
Tumor-normal-enrichment - CNV calling of a tumor/normal pair from targeted sequencing data
SmallPedigree-WGS - CNV calling of a small pedigree from whole genome sequencing data

Options:
-h, --help show this message and exit
-v, --version print version and exit

@eroller
Copy link
Member

eroller commented Oct 19, 2018

Thanks for pointing this out. I've added a link to your instructions on the README.

@eroller eroller closed this as completed Oct 19, 2018
Sign up for free to subscribe to this conversation on GitHub. Already have an account? Sign in.
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants