.gitignore

# Build Folders 
[Bb]in/
[Oo]bj/

# Build results
TestResults/
[Dd]ebug/
[Rr]elease/
.vs/
x64/
.vs/
*_i.c
*_p.c
*.ilk
*.meta
*.obj
*.pch
*.pgc
*.pgd
*.rsp
*.sbr
*.tlb
*.tli
*.tlh
*.tmp
*.log
*.vspscc
*.vssscc
.builds
*.suo
*.error
*.user

# ReSharper is a .NET coding add-in
_ReSharper*
_ReSharper.*

# NuGet Packages Directory
src/packages/**/*

# OS generated files
._*
.DS_Store

#VS 
launchSettings.json
*.DotSettings.user
*.suo
*.user

bin
obj
packages
UpgradeLog*.htm
Backup/
=======
/images
/redist
/src/.nuget
*.migration_in_place_backup
*.pubxml
/src/Pisces/tmppub/runtimes
/src/Pisces/tmppub
/src/Pisces.Processing
/src/Pisces.Calculators
/src/Pisces
/src/RequiredFiles
/src/Scylla
/src/Stitcher
/src/Hygea
/src/VariantPhasing
/src/VariantQualityRecalibration
/src/BamSummarizer
/src/Alignment.IO
/src/AdditionalFilesForLinux
/src/Alignment.Logic
/src/VcfCompare
/src/Pisces.sln
/Tailor
/testdata/Out/PhasingLogs
/CallSomaticVariants.zip
/dotcover1.xml
/RealignIndels.zip
/sed.exe.stackdump
/src - Shortcut.lnk
/tg au
/tts
/uname.exe.stackdump