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placeholder TIP field libraries #880

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Tracked by #1345
esraneufeld opened this issue Feb 24, 2023 · 1 comment
Open
Tracked by #1345

placeholder TIP field libraries #880

esraneufeld opened this issue Feb 24, 2023 · 1 comment
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PO issue Created by Product owners TIP Temporal Interference Planning

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@esraneufeld
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esraneufeld commented Feb 24, 2023

solution to deal with increasing number of simulated anatomical head models (and different species) - which will even dynamically grow, once we add personalized modeling.
idea: avoid just packing it all into one huge service. create a kind of extensible, mountable (?) library

@esraneufeld esraneufeld added the PO issue Created by Product owners label Feb 24, 2023
@sanderegg sanderegg added this to the Mithril milestone Feb 28, 2023
@mguidon
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mguidon commented Mar 29, 2023

Update on sprint Mithril

Done

Evaluation of HSDS, a highly scalable data service based on the hdf5 file format. Can be served using a S3 backend. Allows to stream specific datasets/snapshots from the files without opening/downloading everything. Following things have been looked at:

  • Deployment (very easy, docker-compose based)
  • c++ volume adapter does not work out-of the box (not the whole API consumed by CStorage is supported from by the REST API). That would allow to use HSDS directly from sim4life without any changes to the code base.
  • python h5pyd client works very well, has same API as h5py

Todo

  • Check efficiency when accessed from the optimizer

@pcrespov pcrespov assigned pcrespov and unassigned pcrespov Mar 30, 2023
@sanderegg sanderegg modified the milestones: Mithril, Jelly Beans Apr 5, 2023
@sanderegg sanderegg assigned odeimaiz and unassigned pcrespov and odeimaiz Apr 6, 2023
@pcrespov pcrespov removed this from the Jelly Beans milestone Jun 12, 2023
@Konohana0608 Konohana0608 added the TIP Temporal Interference Planning label Oct 16, 2023
@Konohana0608 Konohana0608 self-assigned this Oct 16, 2023
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PO issue Created by Product owners TIP Temporal Interference Planning
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