diff --git a/workflow/main.yaml b/workflow/main.yaml index ca4cd00..af595d5 100644 --- a/workflow/main.yaml +++ b/workflow/main.yaml @@ -176,6 +176,7 @@ workflow: indel_padding: indel_padding snv_padding: snv_padding sv_padding: sv_padding + associated_vcfs: associated_vcfs depends_on: - completed@generate_minibam diff --git a/workflow/tools/generate_song_payloads.py b/workflow/tools/generate_song_payloads.py index ef81213..22a64cf 100644 --- a/workflow/tools/generate_song_payloads.py +++ b/workflow/tools/generate_song_payloads.py @@ -63,8 +63,7 @@ def create_payload_json(bam, experiment, input_directory, output_file, associate song_payload.add_info('indelPadding',indel_padding) - song_payload.add_info('full_size_bam', {key:bam[key] for key in ['aliquot_id','file_md5sum','file_name','file_size', - 'object_id','oxog_score','song_analysis_id']}) + song_payload.add_info('full_size_bam', {key:bam[key] for key in ['aliquot_id','file_md5sum','file_name','file_size','object_id']}) song_payload.add_info('vcf_files',associated_vcfs) song_payload.to_json_file(output_file)