thesis.tex

\documentclass[doctor,12pt]{styles/iscs-thesis}

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% import necessary packages %
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\usepackage{newtxtext,newtxmath}      % change font to "Times New Roman"
\usepackage[nottoc]{tocbibind}        % Includes "References" in the table of contents
\usepackage[                          % Add clickable hyper links to references and TOC
  hidelinks,
  dvipdfmx,
  colorlinks = true,
  linkcolor = black,
  urlcolor  = blue,                   % turn URL link to blue color
  citecolor = black,
  anchorcolor = black]{hyperref}
\usepackage[round,sort]{natbib}       % author-year style references, *.bib,requires BibTeX format; sort by author name
\usepackage{indentfirst}              % the first paragraph also indent with 2 characters
\usepackage[dvipdfmx]{graphicx}       % zoom the table/figure to the proper size
\usepackage{bmpsize}                  % previous dvipdfm option and this to fix pdf figure error
\usepackage[                          % Bold the Fig. and Table.
  labelfont=bf,
  textfont=md]{caption}
\usepackage{threeparttable}           % add notes to the table bottom
\usepackage{chngpage}
\usepackage[nobiblatex]{xurl}         % long url line breaks
\usepackage{lscape}                   % landscape full page figures
\usepackage{setspace}                 % set page for published paper abstract linespace
\usepackage[normalem]{ulem}           % better view for underline
\usepackage{amsmath}                  % package for matrix formular
\usepackage{pifont}                   % package for special symbol
% \usepackage[left,pagewise]{lineno}    % the line numbers for each page
\usepackage[                          % the acronym throughput the thesis
  toc,
  acronym,
  nonumberlist]{glossaries}
\makenoidxglossaries
\preto\chapter{\glsresetall}          % expand acronyms for first-time use within each chapter

% \usepackage[final]{changes}
% \usepackage[defaultcolor=red]{changes} % change tracking

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\urlstyle{same}                       % the \url{} links also use Times New Roman font
% \setlength{\parskip}{5pt}           % if you need space before each paragraph, open it

\usepackage{geometry}                 % change the page setting to standard MS Word A4
\geometry{a4paper,left=3.17cm,right=3.17cm,top=2.54cm,bottom=2.54cm}

\setcounter{secnumdepth}{3}           % add the subsubsection into contents
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% add Fig. Sx and Table Sx for supplementary section
\newcommand{\appendixsection}{%
  \section{Appendix}% Set supplementary section

  \setcounter{table}{0}% Reset table counter
  \let\oldthetable\thetable% Capture table numbering scheme
  \renewcommand{\thetable}{S\oldthetable}% Prefix table number with S

  \setcounter{figure}{0}% Reset figure counter
  \let\oldthefigure\thefigure% Capture figure numbering scheme
  \renewcommand{\thefigure}{S\oldthefigure}% Prefix figure number with S

  \let\oldchapter\chapter% Copy \chapter into \oldchapter
  \renewcommand{\chapter}{% Update \chapter
    \let\thefigure\oldthefigure% Copy \thefigure into \oldthefigure
    \let\thetable\oldthetable
    \let\chapter\oldchapter% Restore original \chapter
    \oldchapter% Call original \chapter
  }
}

% 論文の種類とフォントサイズをオプションに
%-------------------
% \etitle{Studies on 3D-based Plant Phenotyping by Multi-scale Data Fusion}
% \jtitle{マルチスケールデータ融合による植物表現型の３次元計測に関する研究}
%
% \eauthor{Haozhou Wang}
% \jauthor{王浩舟}
% \jsupervisor{加藤洋一郎　　東京大学教授}
% \jsupervisor{加藤洋一郎}
% \senkou{農学国際専攻(IPADS)}
% \supervisortitle{　　郭威　　　東京大学准教授}
% \supervisortitle{東京大学教授}
% \date{令和 3 年博士課程入学}
%-------------------

\include{abbreviations.tex}

\begin{document}

% replace the following command in the original template
% \maketitle
\begin{titlepage}
  \begin{center}
      \vspace*{2.5cm}

      {\LARGE Doctoral Thesis (博士論文)}

      \vspace*{2cm}

      \begin{spacing}{4.5}
        \textbf{\Huge Studies on 3D-based plant phenotyping by multi-scale data fusion}
      \end{spacing}

      \vspace{0.5cm}
      \textrm{(マルチスケールデータ融合による植物表現型の３次元計測に関する研究)}
           
      \vspace{7.5cm}

      \textrm{\Huge 王　浩舟}

      \vspace{0.5cm}
      \textrm{\Large Wang~~Haozhou}

      \vfill
          
  \end{center}
\end{titlepage}

\pagenumbering{roman}
% \linenumbers

\include{abstract.tex}

\frontmatter %% 前付け
\tableofcontents % 目次
\listoffigures % 図目次
\listoftables % 表目次
%\lstlistoflistings % ソースコード目次
\glsfindwidesttoplevelname
\setglossarystyle{alttree}
\printnoidxglossary[type=acronym, title=List of Abbreviations, toctitle=List of Abbreviations]
%-------------------

\mainmatter %% 本文

\doublespacing
\include{chapter1.tex}
\include{chapter2.tex}
\include{chapter3.tex}
\include{chapter4.tex}
\include{chapter5.tex}
\include{chapter6.tex}

\include{acknowledgement.tex}

%-------------------
\begin{singlespace}
  \bibliographystyle{elsarticle-harv} % 参考文献
  \bibliography{styles/bibtex} %
\end{singlespace}
%-------------------

\include{publication.tex}

\end{document}