ValueError: columns cannot be a set #192
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Thanks a lot, I use pandas 1.4.0 to solve this problem. |
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My output file is
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import data into R by following code:
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Closes Hoohm#192 Pandas' DataFrame() constructor used to accept a `set` as its `columns` argument, but no longer does. This simply converts the `set` to a `list` before creating the data frame. There may be better approaches to deal with this issue, but I'm not familiar enough with this package to know about them.
When I use "CITE-seq-Count-R1./ SRR13724311_S1_L001_R1_001.fastq.gz-R2 SRR13724311_S1_L001_R2_001.fastq.gz-t Cmca9_tag_list_utf8.cfa-cbf 1-cbl 16-umif 17-umil 28 -cells 10000-o OUTFOLDER "is always normal. Always normal when Looking for a whitelist, Correcting cell barcodes appear later
Looking for a whitelist
Collapsing cell barcodes
Correcting umis
Traceback (most recent call last):
File "/home/wangjiawen/miniconda3/bin/CITE-seq-Count", line 8, in
sys.exit(main())
The File "/ home/wangjiawen/miniconda3 / lib/python3.9 / site - packages/cite_seq_count / main. Py", line 603, in the main
io.write_dense(
The File "/ home/wangjiawen/miniconda3 / lib/python3.9 / site - packages/cite_seq_count/IO. Py", 48, the line in write_dense
pandas_dense = pd.DataFrame(sparse_matrix.todense(), columns=columns, index=index)
The File "/ home/wangjiawen/miniconda3 / lib/python3.9 / site - packages/pandas/core/frame. Py", line 744, in init
raise ValueError("columns cannot be a set")
ValueError: columns cannot be a set, how do I solve this problem, this seems to be a python package error
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