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What is exact interpreter of the Snakefile? #4

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darkcircle opened this issue Jan 2, 2023 · 1 comment
Open

What is exact interpreter of the Snakefile? #4

darkcircle opened this issue Jan 2, 2023 · 1 comment

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@darkcircle
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I tried to test this source tree, but there is so many incomplete things,
Shebang is missing and/or many code does not follow the syntax of specific programming language.

There seems to be no way to run code. How could I handle Snakefile?
many explanation is not being on manual.

Thank you in advance.

@HelenaLC
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HelenaLC commented Jan 3, 2023

The workflow is written and executes using Snakemake, which is a Python-based workflow management system. Once installed, the Snakefile can be executed from the command via snakemake -j n where n = number of cores to used (provided you are in the directory where the Snakefile sits.

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