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Extract values from plotExprHeatmap() #416

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Tregwiz opened this issue Jan 16, 2025 · 0 comments
Open

Extract values from plotExprHeatmap() #416

Tregwiz opened this issue Jan 16, 2025 · 0 comments

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@Tregwiz
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Tregwiz commented Jan 16, 2025

Hi,

Thanks for providing a great package and for all the help offered on here.

I was wondering how to extract the values displayed by plotExprHeatmap() in to a csv file i.e. the median scaled expression values for each of the markers for each cluster_id:

plotExprHeatmap(sce2, features = "type", by = "cluster_id", k = "Clusters")

Thanks.

Best wishes,

Gabriel

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