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rescale intensities failed running ipattern #9

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QidiFeng opened this issue Jan 29, 2021 · 0 comments
Open

rescale intensities failed running ipattern #9

QidiFeng opened this issue Jan 29, 2021 · 0 comments

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@QidiFeng
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Hi,

I met "Rescale intensities failed" when running iPattern with inputs produced by "finalreport_to_iPattern.pl" in EnsembleCNV package. Below is the details of STDOUT. I am wondering do you meet such an error before? Are there any loci filtering processes for iPattern inputs? Thank you very much!

Traceback (most recent call last):
File "/home/fengqidi/ipn_0.582/preprocess/ilmn/rescale.py", line 198, in
run ( )
File "/home/fengqidi/ipn_0.582/preprocess/ilmn/rescale.py", line 145, in run
opened_read_file = get_open_files (samplelist, 'r', insuffix)
File "/home/fengqidi/ipn_0.582/preprocess/ilmn/rescale.py", line 26, in get_open_files
f = open ( fullname, mode )
IOError: [Errno 2] No such file or directory: 'EA215_dir/t/X202579150039_R01C01.nml'

Best regards,
Qidi

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