Issue with iPattern

[gabe2323]

Hi, I am a new user of ensembleCNV and am having trouble solving an error with iPattern CNV analysis. Here is the error. I appreciate any help.

python /nas/longleaf/apps/ipattern/0.582/ipn_0.582/ipn/run_ipattern.py -s ensemble/01_initial_call/run_iPattern/PASH_chr -t /01_initial_call/run_iPattern/PASH_call --noqsub
IPATTERN-ANALYSIS FAILED.

Here is the pash.stderr file

SPLIT ALL DATA finished SUCCESSFULLY.
find probe finished SUCCESSFULLY.
sort probe finished SUCCESSFULLY.
SORT ALL INTENSITIES finished SUCCESSFULLY.
CHANNEL BLANCING finished SUCCESSFULLY.
REMOVE BAD SAMPLES finished SUCCESSFULLY.
QUANTILE NORMALIZATION finished SUCCESSFULLY.
RESCALE INTENSITIES finished SUCCESSFULLY.
VARIANCE NORMALIZATION finished SUCCESSFULLY.
SPLIT CHROMOSOME finished SUCCESSFULLY.
SPLIT GENDER finished SUCCESSFULLY.

Here is the pash.stdout file

bash chr12.q.PASH.int.qsub
bash chr14.p.PASH.int.qsub
bash chr12.p.PASH.int.qsub
bash chr2.q.PASH.int.qsub
bash chr18.q.PASH.int.qsub
bash chr3.q.PASH.int.qsub
bash chr1.p.PASH.int.qsub
bash chr19.p.PASH.int.qsub
bash chr3.p.PASH.int.qsub
bash chr6.p.PASH.int.qsub
bash chr4.q.PASH.int.qsub
bash chr13.q.PASH.int.qsub
bash chr5.p.PASH.int.qsub
bash chr22.q.PASH.int.qsub
bash chr10.q.PASH.int.qsub
bash chr10.p.PASH.int.qsub
bash chr15.q.PASH.int.qsub
bash chr11.p.PASH.int.qsub
bash chr6.q.PASH.int.qsub
bash chr1.q.PASH.int.qsub
bash chr20.p.PASH.int.qsub
bash chr7.p.PASH.int.qsub
bash chr19.q.PASH.int.qsub
bash chr2.p.PASH.int.qsub
bash chr8.q.PASH.int.qsub
bash chrY.male.p.PASH.int.qsub
bash chr9.p.PASH.int.qsub
bash chr7.q.PASH.int.qsub
bash chr4.p.PASH.int.qsub
bash chrX.female.p.PASH.int.qsub
bash chr21.q.PASH.int.qsub
bash chr20.q.PASH.int.qsub
bash chr18.p.PASH.int.qsub
bash chr16.q.PASH.int.qsub
bash chr11.q.PASH.int.qsub
bash chr17.p.PASH.int.qsub
bash chrY.male.q.PASH.int.qsub
bash chr17.q.PASH.int.qsub
bash chr21.p.PASH.int.qsub
bash chr9.q.PASH.int.qsub
bash chr8.p.PASH.int.qsub
bash chrX.female.q.PASH.int.qsub
bash chr14.q.PASH.int.qsub
bash chr5.q.PASH.int.qsub
bash chrX.male.p.PASH.int.qsub
bash chr16.p.PASH.int.qsub
bash chrX.male.q.PASH.int.qsub
Intensity file "chr14.p.PASH.int" does not have ipatern result.