Tutorials for Users

• Analyzing simulations with LOOS
• Preparing to analyze a NAMD simulation
• Preparing to analyze a GROMACS simulation
• Using LOOS with Amber
• Using LOOS with OpenMM
• Analyzing membrane simulations
• Analyzing nucleic acid simulations
• Analyzing simulations with sugars and carbohydrates
• Using config files instead of command line options
• Using LOOS for principal component analysis
• Using the --range option
• Error- unrecognized option : what does this mean?
• Suggested workflows

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