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@article{Ross2017,
author = {Ross, Wilbur and Jarmin, Ron and Blumerman, Lisa and Lamas, Enrique and Ratcliffe, Michael R and Hanks, Gregory F and Doms, Mark},
file = {:C$\backslash$:/Users/mrvr/Downloads/TGRSHP2017{\_}TechDoc.pdf:pdf},
title = {{TIGER/Line {\textregistered} Shapefiles 2017 Economic and Statistics Administration}},
url = {https://www2.census.gov/geo/pdfs/maps-data/data/tiger/tgrshp2017/TGRSHP2017{\_}TechDoc.pdf},
year = {2017}
}
@article{Stanley2019,
author = {Stanley, Emily H. and Collins, Sarah M. and Lottig, Noah R. and Oliver, Samantha K. and Webster, Katherine E. and Cheruvelil, Kendra S. and Soranno, Patricia A.},
doi = {10.1002/lno.11136},
issn = {00243590},
journal = {Limnology and Oceanography},
month = {feb},
publisher = {John Wiley {\&} Sons, Ltd},
title = {{Biases in lake water quality sampling and implications for macroscale research}},
url = {http://doi.wiley.com/10.1002/lno.11136},
year = {2019}
}
@article{Hestir2015,
abstract = {Freshwater ecosystems underpin global water and food security, yet are some of the most endangered ecosystems in the world because they are particularly vulnerable to land management change and climate variability. The US National Research Council's guidance to NASA regarding missions for the coming decade includes a polar orbiting, global mapping hyperspectral satellite remote sensing mission, the Hyperspectral Infrared Imager (HyspIRI), to make quantitative measurements of ecosystem change. Traditionally, freshwater ecosystems have been challenging to measure with satellite remote sensing because they are small and spatially complex, require high fidelity spectroradiometry, and are best described with biophysical variables derived from high spectral resolution data. In this study, we evaluate the contribution of a hyperspectral global mapping satellite mission to measuring freshwater ecosystems. We demonstrate the need for such a mission, and evaluate the suitability and gaps, through an examination of the measurement resolution issues impacting freshwater ecosystem measurements (spatial, temporal, spectral and radiometric). These are exemplified through three case studies that use remote sensing to characterize a component of freshwater ecosystems that drive primary productivity. The high radiometric quality proposed for the HyspIRI mission makes it uniquely well designed for measuring freshwater ecosystems accurately at moderate to high spatial resolutions. The spatial and spectral resolutions of the HyspIRI mission are well suited for the retrieval of multiple biophysical variables, such as phycocyanin and chlorophyll-a. The effective temporal resolution is suitable for characterizing growing season wetland phenology in temperate regions, but may not be appropriate for tracking algal bloom dynamics, or ecosystem responses to extreme events in monsoonal regions. Global mapping missions provide the systematic, repeated measurements necessary to measure the drivers of freshwater biodiversity change. Archival global mapping missions with open access and free data policies increase end user uptake globally. Overall, an archival, hyperspectral global mapping mission uniquely meets the measurement requirements of multiple end users for freshwater ecosystem science and management.},
author = {Hestir, Erin Lee and Brando, Vittorio E. and Bresciani, Mariano and Giardino, Claudia and Matta, Erica and Villa, Paolo and Dekker, Arnold G.},
doi = {10.1016/J.RSE.2015.05.023},
issn = {0034-4257},
journal = {Remote Sensing of Environment},
month = {sep},
pages = {181--195},
publisher = {Elsevier},
title = {{Measuring freshwater aquatic ecosystems: The need for a hyperspectral global mapping satellite mission}},
url = {https://www.sciencedirect.com/science/article/abs/pii/S0034425715300237},
volume = {167},
year = {2015}
}
@article{Odermatt2018,
abstract = {Abstract. The use of ground sampled water quality information for global studies is limited due to practical and financial constraints. Remote sensing is a valuable means to overcome such limitations and to provide synoptic views of ambient water quality at appropriate spatio-temporal scales. In past years several large data processing efforts were initiated to provide corresponding data sources. The Diversity II water quality dataset consists of several monthly, yearly and 9-year averaged water quality parameters for 340 lakes worldwide and is based on data from the full ENVISAT MERIS operation period (2002–2012). Existing retrieval methods and datasets were selected after an extensive algorithm intercomparison exercise. Chlorophyll-a, total suspended matter, turbidity, coloured dissolved organic matter, lake surface water temperature, cyanobacteria and floating vegetation maps, as well as several auxiliary data layers, provide a generically specified database that can be used for assessing a variety of locally relevant ecosystem properties and environmental problems. For validation and accuracy assessment, we provide matchup comparisons for 24 lakes and a group of reservoirs representing a wide range of bio-optical conditions. Matchup comparisons for chlorophyll-a concentrations indicate mean absolute errors and bias in the order of median concentrations for individual lakes, while total suspended matter and turbidity retrieval achieve significantly better performance metrics across several lake-specific datasets. We demonstrate the use of the products by illustrating and discussing remotely sensed evidence of lake-specific processes and prominent regime shifts documented in the literature. The Diversity II data are available from https://doi.pangaea.de/10.1594/PANGAEA.871462, and Python scripts for their analysis and visualization are provided at https://github.com/odermatt/diversity/.},
author = {Odermatt, Daniel and Danne, Olaf and Philipson, Petra and Brockmann, Carsten},
doi = {10.5194/essd-10-1527-2018},
issn = {18663516},
journal = {Earth System Science Data},
month = {aug},
number = {3},
pages = {1527--1549},
title = {{Diversity II water quality parameters from ENVISAT (2002-2012): A new global information source for lakes}},
url = {https://www.earth-syst-sci-data.net/10/1527/2018/},
volume = {10},
year = {2018}
}
@book{Mishra2017,
author = {Mishra, DR and Ogashawara, I and Gitelson, AA},
publisher = {Elsevier},
title = {{Bio-optical modeling and remote sensing of inland waters}},
url = {https://books.google.com/books?hl=en{\&}lr={\&}id=jgNQCwAAQBAJ{\&}oi=fnd{\&}pg=PP1{\&}dq=bio-optical+modelling+and+remote+sensing+of+inland+waters{\&}ots=FoWel5zE{\_}4{\&}sig=52oX6rE9-IqeDYDcXgc8Mus0WYA},
year = {2017}
}
@article{Hirsch2015,
abstract = {Evaluating long-term changes in river conditions (water quality and discharge) is an important use of hydrologic data. To carry out such evaluations, the hydrologist needs tools to facilitate several key steps in the process: acquiring the data records from a variety of sources, structuring it in ways that facilitate the analysis, processing the data with routines that extract information about changes that may be happening, and displaying findings with graphical techniques. A pair of tightly linked R packages, called dataRetrieval and EGRET (Exploration and Graphics for RivEr Trends), have been developed for carrying out each of these steps in an integrated manner. They are designed to easily accept data from three sources: U.S. Geological Survey hydrologic data, U.S. Environmental Protection Agency (EPA) STORET data, and user-supplied flat files. The dataRetrieval package not only serves as a “front end” to the EGRET package, it can also be used to easily download many types of hydrologic data and organize it in ways that facilitate many other hydrologic applications. The EGRET package has components oriented towards the description of long-term changes in streamflow statistics (high flow, average flow, and low flow) as well as changes in water quality. For the water-quality analysis, it uses Weighted Regressions on Time, Discharge and Season (WRTDS) to describe long-term trends in both concentration and flux. EGRET also creates a wide range of graphical presentations of the water-quality data and of the WRTDS results. This report serves as a user guide to these two R packages, providing detailed guidance on installation and use of the software, documentation of the analysis methods used, as well as guidance on some of the kinds of questions and approaches that the software can facilitate.},
author = {Hirsch, Robert M. and {De Cicco}, Laura},
doi = {http://dx.doi.org/10.3133/tm4A10},
isbn = {ISSN 2328-7055 (online)},
issn = {2328-7055},
journal = {Techniques and Methods book 4},
number = {February},
pages = {93},
title = {{User guide to Exploration and Graphics for RivEr Trends (EGRET) and dataRetrieval: R packages for hydrologic data}},
url = {http://pubs.usgs.gov/tm/04/a10/},
year = {2015}
}
@incollection{Mobley1994,
address = {San Diego},
author = {Mobley, CD},
booktitle = {Natural Waters.},
publisher = {Academic Press},
title = {{Light and water: radiative transfer}},
year = {1994}
}
@misc{FitzJohn2018,
author = {FitzJohn, R.},
title = {{remake: Make-like build management. R package version 0.3.0.}},
url = {https://github.com/richfitz/remake},
year = {2018}
}
@misc{RFoundationforStatisticalComputing2018,
address = {Vienna, Austria},
author = {{R Foundation for Statistical Computing}},
title = {{R: A language and environment for statistical computing.}},
url = {https://www.r-project.org},
year = {2018}
}
@misc{Allaire2018,
author = {Allaire, J.J. and Xie, Yihui and Mcphereson, Jonathan and Luraschi, Javier and Ushey, Kevin and Atkins, Aron and Wickham, Hadley and Cheng, Joe and Chang, Winston and Iannone, Richard},
title = {{rmarkdown: Dynamic Documents for R. R package version 1.11}},
url = {https://rmarkdown.rstudio.com},
year = {2018}
}
@article{Barsi2014,
abstract = {Abstract: This paper discusses the pre-launch spectral characterization of the Operational Land Imager (OLI) at the component, assembly and instrument levels and relates results of those measurements to artifacts observed in the on-orbit imagery. It concludes that the types of artifacts observed and their magnitudes are consistent with the results of the pre-launch characterizations. The OLI in-band response was characterized both at the integrated instrument level for a sampling of detectors and by an analytical stack-up of component measurements. The out-of-band response was characterized using a combination of Focal Plane Module (FPM) level measurements and optical component level measurements due to better sensitivity. One of the challenges of a pushbroom design is to match the spectral responses for all detectors so that images can be flat-fielded regardless of the spectral nature of the targets in the imagery. Spectral variability can induce striping (detector-to-detector variation), banding (FPM-to-FPM variation) and other artifacts in the final data products. Analyses of the measured spectral response showed that the maximum discontinuity between FPMs due to spectral filter differences is 0.35{\%} for selected targets for all bands except for Cirrus, where there is almost no signal. The average discontinuity between FPMs is 0.12{\%} for the same targets. These results were expected and are in accordance with the OLI requirements. Pre-launch testing identified low levels (within requirements) of spectral crosstalk amongst the three HgCdTe (Cirrus, SWIR1 and SWIR2) bands of the OLI and on-orbit data confirms this crosstalk in the imagery. Further post-launch analyses and simulations revealed that the strongest crosstalk effect is from the SWIR1 band to the Cirrus band; about 0.2{\%} of SWIR1 signal leaks into the Cirrus. Though the total crosstalk signal is only a few counts, it is evident in some scenes when the in-band cirrus signal is very weak. In moist cirrus-free atmospheres and over typical land surfaces, at least 30{\%} of the cirrus signal was due to the SWIR1 band. In the SWIR1 and SWIR2 bands, crosstalk accounts for no more than 0.15{\%} of the total signal.},
author = {Barsi, Julia and Lee, Kenton and Kvaran, Geir and Markham, Brian and Pedelty, Jeffrey and Barsi, Julia A. and Lee, Kenton and Kvaran, Geir and Markham, Brian L. and Pedelty, Jeffrey A.},
doi = {10.3390/rs61010232},
file = {:C$\backslash$:/Users/mrvr/AppData/Local/Mendeley Ltd./Mendeley Desktop/Downloaded/Barsi et al. - 2014 - The Spectral Response of the Landsat-8 Operational Land Imager.pdf:pdf},
issn = {2072-4292},
journal = {Remote Sensing},
keywords = {8,Landsat,OLI,RSR,characterization,spectral response},
month = {oct},
number = {10},
pages = {10232--10251},
publisher = {Multidisciplinary Digital Publishing Institute},
title = {{The Spectral Response of the Landsat-8 Operational Land Imager}},
url = {http://www.mdpi.com/2072-4292/6/10/10232},
volume = {6},
year = {2014}
}
@article{Oelsner2017,
author = {Oelsner, Gretchen P. and Sprague, Lori A. and Murphy, Jennifer C. and Zuellig, Robert E. and Johnson, Henry M. and Ryberg, Karen R. and Falcone, James A and Stets, Edward G. and Vecchia, Aldo V. and Riskin, Mellissa L and Cicco, Laura A. De and Mills, Taylor J. and Farmer, William H.},
doi = {https://doi.org/10.3133/sir20175006},
file = {:C$\backslash$:/Users/mrvr/AppData/Local/Mendeley Ltd./Mendeley Desktop/Downloaded/Oelsner et al. - 2017 - Water-quality trends in the nation's rivers and streams , 1972 – 2012.pdf:pdf},
journal = {USGS Scientific Investigations Report},
number = {October},
pages = {1972--2012},
title = {{Water-quality trends in the nation's rivers and streams , 1972 – 2012}},
volume = {5006},
year = {2017}
}
@article{Cory2015,
abstract = {{\textless}p{\textgreater}We investigated how absorption of sunlight by chromophoric dissolved organic matter (CDOM) controls the degradation and export of DOM from Imnavait Creek, a beaded stream in the Alaskan Arctic. We measured concentrations of dissolved organic carbon (DOC), as well as concentrations and characteristics of CDOM and fluorescent dissolved organic matter (FDOM), during ice-free periods of 2011–2012 in the pools of Imnavait Creek and in soil waters draining to the creek. Spatial and temporal patterns in CDOM and FDOM in Imnavait Creek were analyzed in conjunction with measures of DOM degradation by sunlight and bacteria and assessments of hydrologic residence times and in situ UV exposure. CDOM was the dominant light attenuating constituent in the UV and visible portion of the solar spectrum, with high attenuation coefficients ranging from 86 ± 12 m{\textless}sup{\textgreater}−1{\textless}/sup{\textgreater} at 305 nm to 3 ± 1 m{\textless}sup{\textgreater}−1{\textless}/sup{\textgreater} in the photosynthetically active region (PAR). High rates of light absorption and thus light attenuation by CDOM contributed to thermal stratification in the majority of pools in Imnavait Creek under low-flow conditions. In turn, thermal stratification increased the residence time of water and DOM, and resulted in a separation of water masses distinguished by contrasting UV exposure (i.e., UV attenuation by CDOM with depth resulted in bottom waters receiving less UV than surface waters). When the pools in Imnavait Creek were stratified, DOM in the pool bottom water closely resembled soil water DOM in character, while the concentration and character of DOM in surface water was reproduced by experimental photo-degradation of bottom water. These results, in combination with water column rates of DOM degradation by sunlight and bacteria, suggest that photo-degradation is the dominant process controlling DOM fate and export in Imnavait Creek. A conceptual model is presented showing how CDOM amount and lability interact with incident UV light and water residence time to determine whether photo-degradation is "light-limited" or "substrate-limited". We suggest that degradation, and thus export, of DOM in CDOM-rich streams or ponds similar to Imnavait is typically light-limited under most flow conditions.{\textless}/p{\textgreater}},
author = {Cory, R. M. and Harrold, K. H. and Neilson, B. T. and Kling, G. W.},
doi = {10.5194/bgd-12-9793-2015},
file = {:C$\backslash$:/Users/mrvr/AppData/Local/Mendeley Ltd./Mendeley Desktop/Downloaded/Cory et al. - 2015 - Controls on dissolved organic matter (DOM) degradation in a headwater stream The influence of photochemical and hyd.pdf:pdf},
isbn = {1726-4170},
issn = {18106285},
journal = {Biogeosciences Discussions},
number = {13},
pages = {9793--9838},
title = {{Controls on dissolved organic matter (DOM) degradation in a headwater stream: The influence of photochemical and hydrological conditions in determining light-limitation or substrate-limitation of photo-degradation}},
volume = {12},
year = {2015}
}
@article{Kuhn2019,
author = {Kuhn, Catherine and Valerio, Aline de Matos and Ward, Nick and Loken, Luke and Sawakuchi, Henrique and Kampel, Milton and Richey, Jeffrey and Stadler, Philipp and Crawford, John and Striegl, Rob and Vermote, Eric and Pahlevan, Nima and Butman, David},
journal = {Remote Sensing of Environment},
title = {{Performance of Landsat-8 and Sentinel-2 surface reflectance products for river remote sensing retrievals of chlorophyll-a and turbidity}},
volume = {Accepted},
year = {2019}
}
@article{Vermote2016,
abstract = {The surface reflectance, i.e., satellite derived top of atmosphere (TOA) reflectance corrected for the temporally, spatially and spectrally varying scattering and absorbing effects of atmospheric gases and aerosols, is needed to monitor the land surface reliably. For this reason, the surface reflectance, and not TOA reflectance, is used to generate the greater majority of global land products, for example, from the Moderate Resolution Imaging Spectroradiometer (MODIS) and Visible Infrared Imaging Radiometer Suite (VIIRS) sensors. Even if atmospheric effects are minimized by sensor design, atmospheric effects are still challenging to correct. In particular, the strong impact of aerosols in the visible and near infrared spectral range can be difficult to correct, because they can be highly discrete in space and time (e.g., smoke plumes) and because of the complex scattering and absorbing properties of aerosols that vary spectrally and with aerosol size, shape, chemistry and density. This paper presents the Landsat 8 Operational Land Imager (OLI) atmospheric correction algorithm that has been developed using the Second Simulation of the Satellite Signal in the Solar Spectrum Vectorial (6SV) model, refined to take advantage of the narrow OLI spectral bands (compared to Thematic Mapper/Enhanced Thematic Mapper (TM/ETM+)), improved radiometric resolution and signal-to-noise. In addition, the algorithm uses the new OLI Coastal aerosol band (0.433–0.450$\mu$m), which is particularly helpful for retrieving aerosol properties, as it covers shorter wavelengths than the conventional Landsat, TM and ETM+ blue bands. A cloud and cloud shadow mask has also been developed using the “cirrus” band (1.360–1.390$\mu$m) available on OLI, and the thermal infrared bands from the Thermal Infrared Sensor (TIRS) instrument. The performance of the surface reflectance product from OLI is analyzed over the Aerosol Robotic Network (AERONET) sites using accurate atmospheric correction (based on in situ measurements of the atmospheric properties), by comparison with the MODIS Bidirectional Reflectance Distribution Function (BRDF) adjusted surface reflectance product and by comparison of OLI derived broadband albedo from United States Surface Radiation Budget Network (US SURFRAD) measurements. The results presented clearly show an improvement of Landsat 8 surface reflectance product over the ad-hoc Landsat 5/7 LEDAPS product.},
author = {Vermote, Eric and Justice, Chris and Claverie, Martin and Franch, Belen},
doi = {10.1016/J.RSE.2016.04.008},
file = {:C$\backslash$:/Users/mrvr/AppData/Local/Mendeley Ltd./Mendeley Desktop/Downloaded/Vermote et al. - 2016 - Preliminary analysis of the performance of the Landsat 8OLI land surface reflectance product.pdf:pdf},
issn = {0034-4257},
journal = {Remote Sensing of Environment},
month = {nov},
pages = {46--56},
publisher = {Elsevier},
title = {{Preliminary analysis of the performance of the Landsat 8/OLI land surface reflectance product}},
url = {https://www.sciencedirect.com/science/article/pii/S0034425716301572},
volume = {185},
year = {2016}
}
@article{Palmer2015,
abstract = {Monitoring and understanding the physical, chemical and biological status of global inland waters are immensely important to scientists and policy makers alike. Whereas conventional monitoring approaches tend to be limited in terms of spatial coverage and temporal frequency, remote sensing has the potential to provide an invaluable complementary source of data at local to global scales. Furthermore, as sensors, methodologies, data availability and the network of researchers and engaged stakeholders in this field develop, increasingly widespread use of remote sensing for operational monitoring of inland waters can be envisaged. This special issue on Remote Sensing of Inland Waters comprises 16 articles on freshwater ecosystems around the world ranging from lakes and reservoirs to river systems using optical data from a range of in situ instruments as well as airborne and satellite platforms. The papers variably focus on the retrieval of in-water optical and biogeochemical parameters as well as information on the biophysical properties of shoreline and benthic vegetation. Methodological advances include refined approaches to adjacency correction, inversion-based retrieval models and in situ inherent optical property measurements in highly turbid waters. Remote sensing data are used to evaluate models and theories of environmental drivers of change in a number of different aquatic ecosystems. The range of contributions to the special issue highlights not only the sophistication of methods and the diversity of applications currently being developed, but also the growing international community active in this field. In this introductory paper we briefly highlight the progress that the community has made over recent decades as well as the challenges that remain. It is argued that the operational use of remote sensing for inland water monitoring is a realistic ambition if we can continue to build on these recent achievements.},
author = {Palmer, Stephanie C.J. and Kutser, Tiit and Hunter, Peter D.},
doi = {10.1016/j.rse.2014.09.021},
file = {:C$\backslash$:/Users/mrvr/AppData/Local/Mendeley Ltd./Mendeley Desktop/Downloaded/Palmer, Kutser, Hunter - 2015 - Remote sensing of inland waters Challenges, progress and future directions(3).pdf:pdf},
isbn = {00344257},
issn = {00344257},
journal = {Remote Sensing of Environment},
keywords = {Earth observation,Ecosystem,Freshwater,Habitat,Hyperspectral,Inherent optical properties,Inland waters,Lake,Monitoring,Multispectral,Optical,Remote sensing,Reservoir,River},
month = {feb},
pages = {1--8},
publisher = {Elsevier},
title = {{Remote sensing of inland waters: Challenges, progress and future directions}},
url = {https://www.sciencedirect.com/science/article/pii/S0034425714003666},
volume = {157},
year = {2015}
}
@article{Kutser1995,
abstract = {The possibilities of solving the passive optical remote sensing inverse problem in the case of a turbid, multi-componental aquatic environment are considered using the data on Lake Peipsi. A well known method based on the correlative relations between the characteristics of the remotely-sensed radiance spectra and other characteristics of the water body is used. Telespectrometrical measurements above Lake Peipsi as well as the simultaneous underwater measurements were carried out during two helicopter and two ship expeditions. It was shown that using the remote sensing data obtained by means of a single measurement series it is possible to describe rather well the actual spatial distribution of the water mass characteristics on Lake Peipsi, but only for the expedition under consideration. However, not a single remote sensing characteristic of the twelve considered by us can give well matching isolines if we use the regression formulae determined on the basis of the whole data set (four expeditions together). Presumably universal algorithms describing the connections between the characteristics of the optical remote sensing spectra and the properties of the water mass in different water bodies and different weather conditions do not exist.},
author = {Kutser, T. and Arst, H. and Miller, T. and K{\"{a}}{\"{a}}rmann, L. and Milius, A.},
doi = {10.1080/01431169508954609},
isbn = {0143-1161},
issn = {13665901},
journal = {International Journal of Remote Sensing},
month = {nov},
number = {16},
pages = {1--2},
publisher = {Taylor {\&} Francis Group},
title = {{Telespectrometrical estimation of water transparency, chlorophyll-a and total phosphorus concentration of Lake Peipsi}},
url = {https://www.tandfonline.com/doi/full/10.1080/01431169508954609},
volume = {16},
year = {1995}
}
@article{Booth2011,
author = {Booth, Nathaniel L. and Everman, Eric J. and Kuo, I-Lin and Sprague, Lori and Murphy, Lorraine},
doi = {10.1111/j.1752-1688.2011.00573.x},
file = {:C$\backslash$:/Users/mrvr/AppData/Local/Mendeley Ltd./Mendeley Desktop/Downloaded/Booth et al. - 2011 - A Web-Based Decision Support System for Assessing Regional Water-Quality Conditions and Management Actions1.pdf:pdf},
issn = {1093474X},
journal = {JAWRA Journal of the American Water Resources Association},
keywords = {Geographical Information System,Internet,assessment,communication,decision support system,environmental management,geospatial analysis,simulation,water,water‐quality planning},
month = {oct},
number = {5},
pages = {1136--1150},
publisher = {Wiley/Blackwell (10.1111)},
title = {{A Web-Based Decision Support System for Assessing Regional Water-Quality Conditions and Management Actions1}},
url = {http://doi.wiley.com/10.1111/j.1752-1688.2011.00573.x},
volume = {47},
year = {2011}
}
@article{Sprague2009,
abstract = {Trends in flow-adjusted concentrations (indicators of anthropogenic changes) and observed concentrations (indicators of natural and anthropogenic changes) of total phosphorus and total nitrogen from 1993 to 2003 were evaluated in the eastern, central, and western United States by adapting the Regional Kendall trend test to account for seasonality and spatial correlation. The only significant regional trend was an increase in flow-adjusted concentrations of total phosphorus in the central United States, which corresponded to increases in phosphorus inputs from fertilizer in the region, particularly west of the Mississippi River. A similar upward regional trend in observed total phosphorus concentrations in the central United States was not found, likely because precipitation and runoff decreased during drought conditions in the region, offsetting the increased source loading on the land surface. A greater number of regional trends would have been significant if spatial correlation had been disregarded, indicating the importance of spatial correlation modifications in regional trend assessments when sites are not spatially independent.},
author = {Sprague, Lori A. and Lorenz, David L.},
doi = {10.1021/es803664x},
isbn = {0013936X (ISSN)},
issn = {0013936X},
journal = {Environmental Science and Technology},
month = {may},
number = {10},
pages = {3430--3435},
pmid = {19544835},
publisher = {American Chemical Society},
title = {{Regional nutrient trends in streams and rivers of the United States, 1993-2003}},
url = {http://pubs.acs.org/doi/abs/10.1021/es803664x},
volume = {43},
year = {2009}
}
@incollection{Lack2000,
address = {Dordrecht},
author = {Lack, T.},
booktitle = {Transboundary Water Resources in the Balkans},
doi = {10.1007/978-94-011-4367-7_19},
file = {:C$\backslash$:/Users/mrvr/AppData/Local/Mendeley Ltd./Mendeley Desktop/Downloaded/Lack - 2000 - Eurowaternet- A Freshwater Monitoring and Reporting Network for All European Countries.pdf:pdf},
pages = {185--191},
publisher = {Springer Netherlands},
title = {{Eurowaternet- A Freshwater Monitoring and Reporting Network for All European Countries}},
url = {http://link.springer.com/10.1007/978-94-011-4367-7{\_}19},
year = {2000}
}
@article{Ballantine2014,
author = {Ballantine, Deborah J. and Davies-Colley, Robert J.},
doi = {10.1007/s10661-013-3508-5},
file = {:C$\backslash$:/Users/mrvr/AppData/Local/Mendeley Ltd./Mendeley Desktop/Downloaded/Ballantine, Davies-Colley - 2014 - Water quality trends in New Zealand rivers 1989–2009.pdf:pdf},
issn = {0167-6369},
journal = {Environmental Monitoring and Assessment},
month = {mar},
number = {3},
pages = {1939--1950},
publisher = {Springer International Publishing},
title = {{Water quality trends in New Zealand rivers: 1989–2009}},
url = {http://link.springer.com/10.1007/s10661-013-3508-5},
volume = {186},
year = {2014}
}
@article{Lee2018,
abstract = {An approach that combines field observations and satellite inferences of Secchi depth could transform how we assess water clarity across the globe and pinpoint key changes over the past century.},
author = {Lee, By Zhongping and Arnone, Robert and Boyce, Daniel and Franz, Bryan and Greb, Steve and Hu, Chuanmin and Lewis, Marlon and Schaeffer, Blake and Shang, Shaoling and Wang, Menghua and Wernand, Marcel and Lee, Zhongping and Arnone, Robert and Boyce, Daniel and Franz, Bryan and Greb, Steve and Hu, Chuanmin and Lavender, Samantha and Lewis, Marlon and Schaeffer, Blake and Shang, Shaoling and Wang, Menghua and Wernand, Marcel and Wilson, Cara and Lee, By Zhongping and Arnone, Robert and Boyce, Daniel and Franz, Bryan and Greb, Steve and Hu, Chuanmin and Lewis, Marlon and Schaeffer, Blake and Shang, Shaoling and Wang, Menghua and Wernand, Marcel},
doi = {10.1029/2018EO097251},
issn = {2324-9250},
journal = {Eos},
month = {may},
number = {May},
pages = {1--10},
title = {{Global Water Clarity : Continuing a Century-Long Monitoring}},
volume = {99},
year = {2018}
}
@article{Wulder2012,
abstract = {Landsat occupies a unique position in the constellation of civilian earth observation satellites, with a long and rich scientific and applications heritage. With nearly 40. years of continuous observation - since launch of the first satellite in 1972 - the Landsat program has benefited from insightful technical specification, robust engineering, and the necessary infrastructure for data archive and dissemination. Chiefly, the spatial and spectral resolutions have proven of broad utility and have remained largely stable over the life of the program. The foresighted acquisition and maintenance of a global image archive has proven to be of unmatched value, providing a window into the past and fueling the monitoring and modeling of global land cover and ecological change. In this paper we discuss the evolution of the Landsat program as a global monitoring mission, highlighting in particular the recent change to an open (free) data policy. The new data policy is revolutionizing the use of Landsat data, spurring the creation of robust standard products and new science and applications approaches. Open data access also promotes increased international collaboration to meet the Earth observing needs of the 21st century. {\textcopyright} 2012.},
author = {Wulder, Michael A. and Masek, Jeffrey G. and Cohen, Warren B. and Loveland, Thomas R. and Woodcock, Curtis E.},
doi = {10.1016/j.rse.2012.01.010},
isbn = {0034-4257},
issn = {00344257},
journal = {Remote Sensing of Environment},
pages = {2--10},
publisher = {Elsevier B.V.},
title = {{Opening the archive: How free data has enabled the science and monitoring promise of Landsat}},
volume = {122},
year = {2012}
}
@article{Lorenzen1980,
author = {Lorenzen, Marc W.},
doi = {10.4319/lo.1980.25.2.0371},
file = {:C$\backslash$:/Users/mrvr/AppData/Local/Mendeley Ltd./Mendeley Desktop/Downloaded/Lorenzen - 1980 - Use of chlorophyll-Secchi disk relationships.pdf:pdf},
issn = {00243590},
journal = {Limnology and Oceanography},
month = {mar},
number = {2},
pages = {371--372},
publisher = {Wiley-Blackwell},
title = {{Use of chlorophyll-Secchi disk relationships}},
url = {http://doi.wiley.com/10.4319/lo.1980.25.2.0371},
volume = {25},
year = {1980}
}
@article{Carlson1977,
author = {Carlson, Robert E.},
doi = {10.4319/lo.1977.22.2.0361},
file = {:C$\backslash$:/Users/mrvr/AppData/Local/Mendeley Ltd./Mendeley Desktop/Downloaded/Carlson - 1977 - A trophic state index for lakes1.pdf:pdf},
issn = {00243590},
journal = {Limnology and Oceanography},
month = {mar},
number = {2},
pages = {361--369},
publisher = {Wiley-Blackwell},
title = {{A trophic state index for lakes1}},
url = {http://doi.wiley.com/10.4319/lo.1977.22.2.0361},
volume = {22},
year = {1977}
}
@article{Secchi1864,
author = {Secchi, P.A.},
doi = {10.1007/BF02726911},
journal = {Il Nuovo Cimento},
month = {dec},
number = {1},
pages = {205--238},
title = {{Relazione delle esperienze fatte a bordo della pontificia pirocorvetta l'Immacolata concezione per determinare la trasparenza del mare; Memoria del P. A. Secchi}},
url = {http://link.springer.com/10.1007/BF02726911},
volume = {20},
year = {1864}
}
@article{Richardson1996,
author = {Richardson, Laurie L.},
doi = {10.2307/1312927},
issn = {1525-3244},
journal = {BioScience},
month = {aug},
number = {7},
pages = {492--501},
title = {{Remote Sensing of Algal Bloom Dynamics}},
url = {http://academic.oup.com/bioscience/article/46/7/492/322759/Remote-Sensing-of-Algal-Bloom-DynamicsNew-research},
volume = {46},
year = {1996}
}
@article{Antoine1996,
author = {Antoine, David and Andr{\'{e}}, Jean-Michel and Morel, Andr{\'{e}}},
doi = {10.1029/95GB02832},
file = {:C$\backslash$:/Users/mrvr/AppData/Local/Mendeley Ltd./Mendeley Desktop/Downloaded/Antoine, Andr{\'{e}}, Morel - 1996 - Oceanic primary production 2. Estimation at global scale from satellite (Coastal Zone Color Scanner) chlo.pdf:pdf},
issn = {08866236},
journal = {Global Biogeochemical Cycles},
month = {mar},
number = {1},
pages = {57--69},
publisher = {Wiley-Blackwell},
title = {{Oceanic primary production: 2. Estimation at global scale from satellite (Coastal Zone Color Scanner) chlorophyll}},
url = {http://doi.wiley.com/10.1029/95GB02832},
volume = {10},
year = {1996}
}
@article{Kutser2004,
author = {Kutser, Tiit},
doi = {10.4319/lo.2004.49.6.2179},
file = {:C$\backslash$:/Users/mrvr/AppData/Local/Mendeley Ltd./Mendeley Desktop/Downloaded/Kutser - 2004 - Quantitative detection of chlorophyll in cyanobacterial blooms by satellite remote sensing.pdf:pdf},
issn = {00243590},
journal = {Limnology and Oceanography},
month = {nov},
number = {6},
pages = {2179--2189},
publisher = {Wiley-Blackwell},
title = {{Quantitative detection of chlorophyll in cyanobacterial blooms by satellite remote sensing}},
url = {http://doi.wiley.com/10.4319/lo.2004.49.6.2179},
volume = {49},
year = {2004}
}
@article{Williamson2008,
author = {Williamson, Craig E and Dodds, Walter and Kratz, Timothy K and Palmer, Margaret A},
doi = {10.1890/070140},
file = {:C$\backslash$:/Users/mrvr/AppData/Local/Mendeley Ltd./Mendeley Desktop/Downloaded/Williamson et al. - 2008 - Lakes and streams as sentinels of environmental change in terrestrial and atmospheric processes.pdf:pdf},
issn = {1540-9295},
journal = {Frontiers in Ecology and the Environment},
month = {jun},
number = {5},
pages = {247--254},
publisher = {Wiley-Blackwell},
title = {{Lakes and streams as sentinels of environmental change in terrestrial and atmospheric processes}},
url = {http://doi.wiley.com/10.1890/070140},
volume = {6},
year = {2008}
}
@article{Robbins2017,
author = {Robbins, Caleb J. and King, Ryan S. and Yeager, Alyse D. and Walker, Coowe M. and Back, Jeffrey A. and Doyle, Robert D. and Whigham, Dennis F.},
doi = {10.1002/ecs2.1739},
file = {:C$\backslash$:/Users/mrvr/AppData/Local/Mendeley Ltd./Mendeley Desktop/Downloaded/Robbins et al. - 2017 - Low-level addition of dissolved organic carbon increases basal ecosystem function in a boreal headwater stream.pdf:pdf},
issn = {21508925},
journal = {Ecosphere},
keywords = {Alaska,Kenai Peninsula,experiment,organic matter,periphyton,resource subsidies,uptake velocity},
month = {apr},
number = {4},
pages = {e01739},
publisher = {Wiley-Blackwell},
title = {{Low-level addition of dissolved organic carbon increases basal ecosystem function in a boreal headwater stream}},
url = {http://doi.wiley.com/10.1002/ecs2.1739},
volume = {8},
year = {2017}
}
@article{Vahatalo2005,
abstract = {1. We examined the absorption of solar radiation by phytoplankton and chromophoric dissolved organic matter (CDOM) taking into account riparian shading in the rivers, reservoirs, swamps of the Neuse River Estuary and its drainage basin.2. In the streams, CDOM typically absorbed 55 and 64{\%} of photons in the spectral range of 400–700 nm (photosynthetically active radiation, PAR) and 500–600 nm, respectively. The large proportion of photons absorbed by CDOM indicates high potential for abiotic photochemial reactions in the 500–600 nm region.3. Despite the high concentration of nutrients, phytoplankton contributed little (2{\%}) to the total absorption of PAR in the streams. Small ({\textless}30 m wide) streams typically received only 7{\%} of incident PAR that impinged onto the more exposed reservoirs and estuary. Riparian shading and the low contribution of phytoplankton to the total absorption resulted in conditions where phytoplankton absorbed nearly two orders of magnitude less PAR in the streams than in the estuary and reservoirs.4. The results indicated that riparian shading and non-algal absorbing components can significantly restrict phytoplankton production in nutrient-rich streams with a high concentration of CDOM flowing throughout forested catchments.},
author = {V{\"{a}}h{\"{a}}talo, Anssi V. and Wetzel, Robert G. and Paerl, Hans W.},
doi = {10.1111/j.1365-2427.2004.01335.x},
file = {:C$\backslash$:/Users/mrvr/AppData/Local/Mendeley Ltd./Mendeley Desktop/Downloaded/VAHATALO, WETZEL, PAERL - 2005 - Light absorption by phytoplankton and chromophoric dissolved organic matter in the drainage basin and e.pdf:pdf},
issn = {00465070},
journal = {Freshwater Biology},
keywords = {CDOM,Chromophoric dissolved organic matter,Optics,Phytoplankton,Streams},
month = {mar},
number = {3},
pages = {477--493},
publisher = {Wiley/Blackwell (10.1111)},
title = {{Light absorption by phytoplankton and chromophoric dissolved organic matter in the drainage basin and estuary of the Neuse River, North Carolina (U.S.A.)}},
url = {http://doi.wiley.com/10.1111/j.1365-2427.2004.01335.x},
volume = {50},
year = {2005}
}
@article{Williams1989,
abstract = {Relations between sediment concentration (C) and water discharge (Q) for a hydrologic event, such as a flood, are studied qualitatively by analyzing “smoothed” temporal graphs (discharge and concentration vs. time) in terms of mode, spread, and skewness. Comparing CQ ratios at a given discharge on the rising and falling limbs of the discharge hydrograph provides a consistent, reliable method for categorizing C–Q relations. Five common classes of such relations are single-valued (straight or curved), clockwise loop, counterclockwise loop, single-valued plus a loop, and figure eight. Temporal-graph mode and skewness influence the type of relation, whereas temporal-graph spread affects the details of the particular C–Q relation (its graphical breadth, shape, orientation, and plotted location). Field examples of the various types of relations are given, including varieties that heretofore have received little attention, such as the figure eight. Explanations for each type of C–Q relation are discussed.},
author = {Williams, Garnett P.},
doi = {10.1016/0022-1694(89)90254-0},
issn = {0022-1694},
journal = {Journal of Hydrology},
month = {jan},
number = {1-4},
pages = {89--106},
publisher = {Elsevier},
title = {{Sediment concentration versus water discharge during single hydrologic events in rivers}},
url = {https://www.sciencedirect.com/science/article/pii/0022169489902540},
volume = {111},
year = {1989}
}
@article{Doxani2018,
abstract = {The Atmospheric Correction Inter-comparison eXercise (ACIX) is an international initiative with the aim to analyse the Surface Reflectance (SR) products of various state-of-the-art atmospheric correction (AC) processors. The Aerosol Optical Thickness (AOT) and Water Vapour (WV) are also examined in ACIX as additional outputs of AC processing. In this paper, the general ACIX framework is discussed; special mention is made of the motivation to initiate the experiment, the inter-comparison protocol, and the principal results. ACIX is free and open and every developer was welcome to participate. Eventually, 12 participants applied their approaches to various Landsat-8 and Sentinel-2 image datasets acquired over sites around the world. The current results diverge depending on the sensors, products, and sites, indicating their strengths and weaknesses. Indeed, this first implementation of processor inter-comparison was proven to be a good lesson for the developers to learn the advantages and limitations of their approaches. Various algorithm improvements are expected, if not already implemented, and the enhanced performances are yet to be assessed in future ACIX experiments.},
author = {Doxani, Georgia and Vermote, Eric and Roger, Jean-Claude and Gascon, Ferran and Adriaensen, Stefan and Frantz, David and Hagolle, Olivier and Hollstein, Andr{\'{e}} and Kirches, Grit and Li, Fuqin and Louis, J{\'{e}}r{\^{o}}me and Mangin, Antoine and Pahlevan, Nima and Pflug, Bringfried and Vanhellemont, Quinten and Doxani, Georgia and Vermote, Eric and Roger, Jean-Claude and Gascon, Ferran and Adriaensen, Stefan and Frantz, David and Hagolle, Olivier and Hollstein, Andr{\'{e}} and Kirches, Grit and Li, Fuqin and Louis, J{\'{e}}r{\^{o}}me and Mangin, Antoine and Pahlevan, Nima and Pflug, Bringfried and Vanhellemont, Quinten},
doi = {10.3390/rs10020352},
file = {:C$\backslash$:/Users/mrvr/AppData/Local/Mendeley Ltd./Mendeley Desktop/Downloaded/Doxani et al. - 2018 - Atmospheric Correction Inter-Comparison Exercise.pdf:pdf},
issn = {2072-4292},
journal = {Remote Sensing},
keywords = {2,8,Landsat,Sentinel,aerosol optical thickness,atmospheric correction,comparison,processors inter,remote sensing,surface reflectance,water vapour},
month = {feb},
number = {3},
pages = {352},
publisher = {Multidisciplinary Digital Publishing Institute},
title = {{Atmospheric Correction Inter-Comparison Exercise}},
url = {http://www.mdpi.com/2072-4292/10/2/352},
volume = {10},
year = {2018}
}
@article{Ju2012,
abstract = {The potential of Landsat data processing to provide systematic continental scale products has been demonstrated by several projects including the NASA Web-enabled Landsat Data (WELD) project. The recent free availability of Landsat data increases the need for robust and efficient atmospheric correction algorithms applicable to large volume Landsat data sets. This paper compares the accuracy of two Landsat atmospheric correction methods: a MODIS-based method and the Landsat Ecosystem Disturbance Adaptive Processing System (LEDAPS) method. Both methods are based on the 6SV radiative transfer code but have different atmospheric characterization approaches. The MODIS-based method uses the MODIS Terra derived dynamic aerosol type, aerosol optical thickness, and water vapor to atmospherically correct ETM+ acquisitions in each coincident orbit. The LEDAPS method uses aerosol characterizations derived independently from each Landsat acquisition and assumes a fixed continental aerosol type and uses ancillary water vapor. Validation results are presented comparing ETM+ atmospherically corrected data generated using these two methods with AERONET corrected ETM+ data for 95 10km×10km 30m subsets, a total of nearly 8 million 30m pixels, located across the conterminous United States. The results indicate that the MODIS-based method has better accuracy than the LEDAPS method for the ETM+ red and longer wavelength bands.},
author = {Ju, Junchang and Roy, David P. and Vermote, Eric and Masek, Jeffrey and Kovalskyy, Valeriy},
doi = {10.1016/J.RSE.2011.12.025},
issn = {0034-4257},
journal = {Remote Sensing of Environment},
month = {jul},
pages = {175--184},
publisher = {Elsevier},
title = {{Continental-scale validation of MODIS-based and LEDAPS Landsat ETM+ atmospheric correction methods}},
url = {https://www.sciencedirect.com/science/article/pii/S003442571200051X},
volume = {122},
year = {2012}
}
@article{Gordon1997,
author = {Gordon, Howard R.},
doi = {10.1029/96JD02443},
file = {:C$\backslash$:/Users/mrvr/AppData/Local/Mendeley Ltd./Mendeley Desktop/Downloaded/Gordon - 1997 - Atmospheric correction of ocean color imagery in the Earth Observing System era.pdf:pdf},
issn = {01480227},
journal = {Journal of Geophysical Research: Atmospheres},
month = {jul},
number = {D14},
pages = {17081--17106},
publisher = {Wiley-Blackwell},
title = {{Atmospheric correction of ocean color imagery in the Earth Observing System era}},
url = {http://doi.wiley.com/10.1029/96JD02443},
volume = {102},
year = {1997}
}
@article{Srebotnjak2012,
abstract = {Water is an essential resource for life on Earth and available freshwater resources are emerging as a limiting factor not only in quantity but also in quality for human development and ecological stability in a growing number of locations. Water quality is a significant criterion in matching water demand and supply. Securing adequate freshwater quality for both human and ecological needs is thus an important aspect of integrated environmental management and sustainable development. The 2008 Environmental Performance Index (EPI) published by the Yale Center for Environmental Law and Policy (YCELP) and the Center for International Earth Science Information Network (CIESIN) at Columbia University includes a Water Quality Index (WATQI). The WATQI provides a first global effort at reporting and estimating water quality on the basis of five commonly reported quality parameters: dissolved oxygen, electrical conductivity, pH value, and total nitrogen and phosphorus concentrations. This paper explains the motivation and methodology of the EPI WATQI and demonstrates how hot-deck imputation of missing values can expand its geographical coverage and better inform decision-makers on the types and extents of water quality problems in the context of limited globally comparable water quality monitoring data.},
author = {Srebotnjak, Tanja and Carr, Genevieve and de Sherbinin, Alexander and Rickwood, Carrie},
doi = {10.1016/J.ECOLIND.2011.04.023},
issn = {1470-160X},
journal = {Ecological Indicators},
month = {jun},
pages = {108--119},
publisher = {Elsevier},
title = {{A global Water Quality Index and hot-deck imputation of missing data}},
url = {https://www.sciencedirect.com/science/article/pii/S1470160X1100104X},
volume = {17},
year = {2012}
}
@article{Palmer2015c,
abstract = {The 10-year archive of MEdium Resolution Imaging Spectrometer (MERIS) data is an invaluable resource for studies on lake system dynamics at regional and global scales. MERIS data are no longer actively acquired but their capacity for global scale monitoring of lakes from satellites will soon be re-established through the forthcoming Sentinel-3 Ocean and Land Colour Instrument (OLCI). The development and validation of in-water algorithms for the accurate retrieval of biogeochemical parameters is thus of key importance if the potential of MERIS and OLCI data is to be fully exploited for lake monitoring. This study presents the first extensive validation of algorithms for chlorophyll-a (chl-a) retrieval by MERIS in the highly turbid and productive waters of Lake Balaton, Hungary. Six algorithms for chl-a retrieval from MERIS over optically complex Case 2 waters, including band-difference and neural network architectures, were compared using the MERIS archive for 2007-2012. The algorithms were locally-tuned and validated using in situ chl-a data (n=289) spanning the five year processed image time series and from all four lake basins. In general, both band-difference algorithms tested (Fluorescence Line Height (FLH) and Maximum Chlorophyll Index (MCI)) performed well, whereas the neural network processors were generally found to much less accurately retrieve in situ chl-a concentrations. The Level 1b FLH algorithm performed best overall in terms of chl-a retrieval (R2=0.87; RMSE=4.19mgm-3; relative RMSE=30.75{\%}) and particularly at chl-a concentrations of ≥10mgm-3 (R2=0.85; RMSE=4.81mgm-3; relative RMSE=20.77{\%}). However, under mesotrophic conditions (i.e., chl-a{\textless}10mgm-3) FLH was outperformed by the locally-tuned FUB/WeW processor (relative FLH RMSE{\textless}10mgm-3=57.57{\%} versus relative FUB/WeW RMSE{\textless}10mgm-3=46.96{\%}). An ensemble selection of in-water algorithms is demonstrated to improve chl-a retrievals.},
author = {Palmer, Stephanie C.J. and Hunter, Peter D. and Lankester, Thomas and Hubbard, Steven and Spyrakos, Evangelos and {N. Tyler}, Andrew and Pr{\'{e}}sing, M{\'{a}}ty{\'{a}}s and Horv{\'{a}}th, Hajnalka and Lamb, Alistair and Balzter, Heiko and T{\'{o}}th, Viktor R.},
doi = {10.1016/j.rse.2014.07.024},
file = {:C$\backslash$:/Users/mrvr/AppData/Local/Mendeley Ltd./Mendeley Desktop/Downloaded/Palmer et al. - 2015 - Validation of Envisat MERIS algorithms for chlorophyll retrieval in a large, turbid and optically-complex shal(2).pdf:pdf},
isbn = {0034-4257},
issn = {00344257},
journal = {Remote Sensing of Environment},
keywords = {Algorithm,Chlorophyll-a,Inland waters,Lake balaton,MERIS,Validation},
pages = {158--169},
publisher = {Elsevier B.V.},
title = {{Validation of Envisat MERIS algorithms for chlorophyll retrieval in a large, turbid and optically-complex shallow lake}},
url = {http://dx.doi.org/10.1016/j.rse.2014.07.024},
volume = {157},
year = {2015}
}
@article{Clarke1970,
abstract = {Spectra of sun and skylight backscattered from the sea were obtained from a low-flying aircraft and were compared with measurements of chlorophyll concentration made from shipboard at the same localities and at nearly the same times. Increasing amounts of chlorophyll were found to be associated with a relative decrease in the blue portion of the spectra and an increase in the green. Anomalies in the spectra show that factors other than chlorophyll also affect the water color in some instances; these factors include other biochromes, suspended sediment, surface reflection, polarization, and air light.},
author = {Clarke, G. L. and Ewing, G. C. and Lorenzen, C. J.},
doi = {10.1126/science.167.3921.1119},
file = {:C$\backslash$:/Users/mrvr/AppData/Local/Mendeley Ltd./Mendeley Desktop/Downloaded/Clarke, Ewing, Lorenzen - 1970 - Spectra of Backscattered Light from the Sea Obtained from Aircraft as a Measure of Chlorophyll Conce(2).pdf:pdf},
isbn = {0036-8075},
issn = {0036-8075},
journal = {Science},
number = {3921},
pages = {1119--1121},
pmid = {17829405},
title = {{Spectra of Backscattered Light from the Sea Obtained from Aircraft as a Measure of Chlorophyll Concentration}},
url = {http://www.sciencemag.org/cgi/doi/10.1126/science.167.3921.1119{\%}5Cnhttp://www.ncbi.nlm.nih.gov/pubmed/17829405},
volume = {167},
year = {1970}
}
@article{Palmer2015b,
abstract = {Monitoring and understanding the physical, chemical and biological status of global inland waters are immensely important to scientists and policy makers alike. Whereas conventional monitoring approaches tend to be limited in terms of spatial coverage and temporal frequency, remote sensing has the potential to provide an invaluable complementary source of data at local to global scales. Furthermore, as sensors, methodologies, data availability and the network of researchers and engaged stakeholders in this field develop, increasingly widespread use of remote sensing for operational monitoring of inland waters can be envisaged. This special issue on Remote Sensing of Inland Waters comprises 16 articles on freshwater ecosystems around the world ranging from lakes and reservoirs to river systems using optical data from a range of in situ instruments as well as airborne and satellite platforms. The papers variably focus on the retrieval of in-water optical and biogeochemical parameters as well as information on the biophysical properties of shoreline and benthic vegetation. Methodological advances include refined approaches to adjacency correction, inversion-based retrieval models and in situ inherent optical property measurements in highly turbid waters. Remote sensing data are used to evaluate models and theories of environmental drivers of change in a number of different aquatic ecosystems. The range of contributions to the special issue highlights not only the sophistication of methods and the diversity of applications currently being developed, but also the growing international community active in this field. In this introductory paper we briefly highlight the progress that the community has made over recent decades as well as the challenges that remain. It is argued that the operational use of remote sensing for inland water monitoring is a realistic ambition if we can continue to build on these recent achievements.},
author = {Palmer, Stephanie C.J. and Kutser, Tiit and Hunter, Peter D.},
doi = {10.1016/j.rse.2014.09.021},
file = {:C$\backslash$:/Users/mrvr/AppData/Local/Mendeley Ltd./Mendeley Desktop/Downloaded/Palmer, Kutser, Hunter - 2015 - Remote sensing of inland waters Challenges, progress and future directions(3).pdf:pdf},
isbn = {00344257},
issn = {00344257},
journal = {Remote Sensing of Environment},
keywords = {Earth observation,Ecosystem,Freshwater,Habitat,Hyperspectral,Inherent optical properties,Inland waters,Lake,Monitoring,Multispectral,Optical,Remote sensing,Reservoir,River},
pages = {1--8},
publisher = {Elsevier Inc.},
title = {{Remote sensing of inland waters: Challenges, progress and future directions}},
url = {http://dx.doi.org/10.1016/j.rse.2014.09.021},
volume = {157},
year = {2015}
}
@article{Read2017,
author = {Read, Emily K. and Carr, Lindsay and {De Cicco}, Laura and Dugan, Hilary A and Hanson, Paul C and Hart, Julia A and Kreft, James and Read, Jordan S and Winslow, Luke A},
doi = {10.1002/2016WR019993},
file = {:C$\backslash$:/Users/mrvr/AppData/Local/Mendeley Ltd./Mendeley Desktop/Downloaded/Read et al. - 2017 - Water quality data for national-scale aquatic research The Water Quality Portal(2).pdf:pdf},
issn = {00431397},
journal = {Water Resources Research},
month = {feb},
number = {2},
pages = {1735--1745},
title = {{Water quality data for national-scale aquatic research: The Water Quality Portal}},
url = {http://doi.wiley.com/10.1002/2016WR019993},
volume = {53},
year = {2017}
}
@article{Klemas1973,
abstract = {Satellite imagery from four successful ERTS-1 passes over Delaware Bay during different portions of the tidal cycle are interpreted with special emphasis on visibility of suspended sediment and its use as a natural tracer for gross circulation patterns. The MSS red band (band 5) appears to give the best contrast, although the sediment patterns are represented by only a few neighboring shades of grey. Color density slicing improves the differentiation of turbidity levels. However, color additive enhancements are of limited value since most of the information is in a single color band. The ability of ERTS-1 to present a synoptic view of the surface circulation over the entire bay is shown to be a valuable and unique contribution of ERTS-1 to coastal oceanography. ?? 1971.},
author = {Klemas, V. and Borchardt, J. F. and Treasure, W. M.},
doi = {10.1016/0034-4257(71)90094-0},
file = {:C$\backslash$:/Users/mrvr/AppData/Local/Mendeley Ltd./Mendeley Desktop/Downloaded/Klemas, Borchardt, Treasure - 1973 - Suspended sediment observations from ERTS-1(2).pdf:pdf},
isbn = {0034-4257},
issn = {00344257},
journal = {Remote Sensing of Environment},
pages = {205--221},
title = {{Suspended sediment observations from ERTS-1}},
volume = {2},
year = {1973}
}
@article{Olmanson2011,
abstract = {This study evaluates currently available imagery from Landsat, MERIS, MODIS, and AWiFS sensors for their usefulness in regional-scale measurements of lake water clarity and chlorophyll for comprehensive lake management and scientific studies (e.g., modeling). Images from these systems were collected nearly concurrently and processed using methods similar to those developed previously for regional assessments of lake water clarity using Landsat imagery. We tested both atmospherically corrected and uncorrected imagery products; the uncorrected products performed as well as or better than the atmospherically corrected products in empirical relationships to estimate water clarity and chlorophyll. MODIS and MERIS systems, which have large swath widths and high temporal coverage are well suited for regional assessments of large lakes, but their low spatial resolution limits the number of lakes that can be assessed. Landsat imagery allows all lakes 4 ha (more than 12,000 in Minnesota) to be assessed, but its low spectral resolution limits assessments to water clarity. The MERIS system, with spectral and spatial resolution suitable for large 150 ha) lakes, was the only system with a spectral band set that measured key absorption and scattering characteristics of phytoplankton that could be used reliably for regional chlorophyll assessments. Although none of the currently available systems is ideal, the study yielded a better definition of the spectral, spatial, and temporal characteristics of the ideal system for regional-scale water quality remote sensing that may be realized in upcoming satellite systems.},
author = {Olmanson, Leif G. and Brezonik, Patrick L. and Bauer, Marvin E.},
doi = {10.1029/2011WR011005},
file = {:C$\backslash$:/Users/mrvr/AppData/Local/Mendeley Ltd./Mendeley Desktop/Downloaded/Olmanson, Brezonik, Bauer - 2011 - Evaluation of medium to low resolution satellite imagery for regional lake water quality assessmen(2).pdf:pdf},
isbn = {0043-1397},
issn = {00431397},
journal = {Water Resources Research},
number = {9},
pages = {1--14},
title = {{Evaluation of medium to low resolution satellite imagery for regional lake water quality assessments}},
volume = {47},
year = {2011}
}
@article{Telmer2006,
abstract = {We present results of mercury (Hg) in surface waters and soils and an analysis of satellite imagery from the Tapaj??s River basin, Brazilian Amazon, and the Reserva Garimpeira do Tapaj??s, the legal gold mining district of the basin. Hg bound to suspended sediment was roughly 600 and 200 times the concentration of dissolved Hg per litre of water, in impacted and pristine areas, respectively. Suspended sediments thus represent the major pathway of river-borne Hg. Median concentrations of Hg in suspended load from both impacted and pristine waters were 134 ppb, and 80{\%} of samples were below 300 ppb-in the range of naturally occurring surficial materials in the tropics. Regionally, riverine Hg fluxes were proportional to the concentration of total suspended solids. This shows that the dominant source of Hg is the sediment itself rather than anthropogenic mercury discharge from the small-scale mines. To independently test this conclusion, a mass balance was performed. A conservative calculation of the annual export of mercury (Hg) from the Crepor?? River (a minimum) was 1.6 tonnes for the year 1998-it could be significantly larger. This amount of Hg is difficult to account for by anthropogenic discharge alone, confirming that enhanced physical erosion caused by sluicing and dredging operations is the dominant source of Hg. We therefore conclude that gold mining operations are primarily responsible for elevated Hg concentrations. The dominant source of contamination is not, however, the loss of Hg in the gold amalgamation process. Rather, the disturbance and mobilization of large quantities of Hg-rich sediment and floodplain soil into the water column during mining operations is the source of contamination. These findings shift the focus of remediation and prevention efforts away from Hg control toward soil and sediment erosion control. The minimization or elimination of Hg losses in the mining process remains important for the health of local peoples and environments, but keeping basin soils and sediments in place would be a much more effective means of minimizing Hg fluxes to the region's rivers. To gain a spatial and historical perspective on the source and extent of emissions, satellite imagery was used. We were able to reconstruct historical mining activity, locate impacted areas, and estimate historical Hg fluxes with the imagery. To do so, the spectral characteristics of satellite images were calibrated to the concentration of suspended sediment in the rivers, which, in turn, is proportional to the Hg concentration. This analysis shows that mining-induced sediment plumes have been a dominant source of sediment to the Tapaj??s River system for decades. As well, the intensity and location of these emissions has varied through time. For example, sediment discharge from the Crepor?? River was greater in 1985 than in 1998; and the tributaries on the west bank of the Tapaj??s were actively being mined in 1985 but had been abandoned in 1998. This type of information should greatly assist in understanding original and ongoing sources of emissions, and in managing prevention and remediation efforts. ?? 2006 Elsevier Ltd. All rights reserved.},
author = {Telmer, Kevin and Costa, Maycira and {Sim{\~{o}}es Ang{\'{e}}lica}, R{\^{o}}mulo and Araujo, Eric S. and Maurice, Yvon},
doi = {10.1016/j.jenvman.2005.09.027},
file = {:C$\backslash$:/Users/mrvr/AppData/Local/Mendeley Ltd./Mendeley Desktop/Downloaded/Telmer et al. - 2006 - The source and fate of sediment and mercury in the Tapajs River, Par, Brazilian Amazon Ground- and space-based(2).pdf:pdf},
isbn = {0301-4797},
issn = {03014797},
journal = {Journal of Environmental Management},
keywords = {Gold mining,Mercury,Remediation strategies,Suspended sediments,Tapaj??s River},
month = {oct},
number = {2},
pages = {101--113},
pmid = {16824670},
title = {{The source and fate of sediment and mercury in the Tapaj{\'{o}}s River, Par{\'{a}}, Brazilian Amazon: Ground- and space-based evidence}},
url = {http://linkinghub.elsevier.com/retrieve/pii/S0301479706001009},
volume = {81},
year = {2006}
}
@article{Wulder2016,
abstract = {New and previously unimaginable Landsat applications have been fostered by a policy change in 2008 that made analysis-ready Landsat data free and open access. Since 1972, Landsat has been collecting images of the Earth, with the early years of the program constrained by onboard satellite and ground systems, as well as limitations across the range of required computing, networking, and storage capabilities. Rather than robust on-satellite storage for transmission via high bandwidth downlink to a centralized storage and distribution facility as with Landsat-8, a network of receiving stations, one operated by the U.S. government, the other operated by a community of International Cooperators (ICs), were utilized. ICs paid a fee for the right to receive and distribute Landsat data and over time, more Landsat data was held outside the archive of the United State Geological Survey (USGS) than was held inside, much of it unique. Recognizing the critical value of these data, the USGS began a Landsat Global Archive Consolidation (LGAC) initiative in 2010 to bring these data into a single, universally accessible, centralized global archive, housed at the Earth Resources Observation and Science (EROS) Center in Sioux Falls, South Dakota. The primary LGAC goals are to inventory the data held by ICs, acquire the data, and ingest and apply standard ground station processing to generate an L1T analysis-ready product. As of January 1, 2015 there were 5,532,454 images in the USGS archive. LGAC has contributed approximately 3.2 million of those images, more than doubling the original USGS archive holdings. Moreover, an additional 2.3 million images have been identified to date through the LGAC initiative and are in the process of being added to the archive. The impact of LGAC is significant and, in terms of images in the collection, analogous to that of having had two additional Landsat-5 missions. As a result of LGAC, there are regions of the globe that now have markedly improved Landsat data coverage, resulting in an enhanced capacity for mapping, monitoring change, and capturing historic conditions. Although future missions can be planned and implemented, the past cannot be revisited, underscoring the value and enhanced significance of historical Landsat data and the LGAC initiative. The aim of this paper is to report the current status of the global USGS Landsat archive, document the existing and anticipated contributions of LGAC to the archive, and characterize the current acquisitions of Landsat-7 and Landsat-8. Landsat-8 is adding data to the archive at an unprecedented rate as nearly all terrestrial images are now collected. We also offer key lessons learned so far from the LGAC initiative, plus insights regarding other critical elements of the Landsat program looking forward, such as acquisition, continuity, temporal revisit, and the importance of continuing to operationalize the Landsat program.},
author = {Wulder, Michael A. and White, Joanne C. and Loveland, Thomas R. and Woodcock, Curtis E. and Belward, Alan S. and Cohen, Warren B. and Fosnight, Eugene A. and Shaw, Jerad and Masek, Jeffrey G. and Roy, David P.},
doi = {10.1016/j.rse.2015.11.032},
file = {:C$\backslash$:/Users/mrvr/AppData/Local/Mendeley Ltd./Mendeley Desktop/Downloaded/Wulder et al. - 2016 - The global Landsat archive Status, consolidation, and direction(2).pdf:pdf},
isbn = {00344257},
issn = {00344257},
journal = {Remote Sensing of Environment},
keywords = {LGAC,Landsat,Landsat Global Archive Consolidation,Monitoring,Satellite},
pages = {271--283},
publisher = {Elsevier B.V.},
title = {{The global Landsat archive: Status, consolidation, and direction}},
url = {http://dx.doi.org/10.1016/j.rse.2015.11.032},
volume = {185},
year = {2016}
}
@article{Holyer1978,
abstract = {A data acquisition and analysis program has been undertaken to demonstrate the feasibility of remote multispectral techniques for monitoring suspended sediment concentrations in natural water bodies. Two hundred surface radiance measurements (400-1000 nm) were made at Lake Mead with coincident water sampling for laboratory analysis. Water volume spectral reflectance is calculated from the recorded surface radiance and volume reflectance-suspended sediment relationships investigated. Statistical analysis indicates that quantitative estimates of nonfilterable residue and nephelometric turbidity can be obtained from volume spectral reflectance data with sufficient accuracy (based on U.S. Environmental Protection Agency standards) to make the multispectral technique feasible for sediment monitoring. Algorithms exhibit sufficient universality to indicate they can be implemented in many cases with little or no ground truth for calibration. {\textcopyright} 1978.},
author = {Holyer, Ronald J.},
doi = {10.1016/0034-4257(78)90023-8},
file = {:C$\backslash$:/Users/mrvr/AppData/Local/Mendeley Ltd./Mendeley Desktop/Downloaded/Holyer - 1978 - Toward universal multispectral suspended sediment algorithms(2).pdf:pdf},
isbn = {0034-4257},
issn = {00344257},
journal = {Remote Sensing of Environment},
number = {4},
pages = {323--338},
title = {{Toward universal multispectral suspended sediment algorithms}},
volume = {7},
year = {1978}
}
@article{Loveland2012,
abstract = {Conceived in the 1960s, the Landsat program has experienced six successful missions that have contributed to an unprecedented 39-year record of Earth Observations that capture global land conditions and dynamics. Incremental improvements in imaging capabilities continue to improve the quality of Landsat science data, while ensuring continuity over the full instrument record. Landsats 5 and 7 are still collecting imagery. The planned launch of the Landsat Data Continuity Mission in December 2012 potentially extends the Landsat record to nearly 50. years. The U.S. Geological Survey (USGS) Landsat archive contains nearly three million Landsat images. All USGS Landsat data are available at no cost via the Internet. The USGS is committed to improving the content of the historical Landsat archive though the consolidation of Landsat data held in international archives. In addition, the USGS is working on a strategy to develop higher-level Landsat geo- and biophysical datasets. Finally, Federal efforts are underway to transition Landsat into a sustained operational program within the Department of the Interior and to authorize the development of the next two satellites - Landsats 9 and 10. {\textcopyright} 2012.},
author = {Loveland, Thomas R. and Dwyer, John L.},
doi = {10.1016/j.rse.2011.09.022},
file = {:C$\backslash$:/Users/mrvr/AppData/Local/Mendeley Ltd./Mendeley Desktop/Downloaded/Loveland, Dwyer - 2012 - Landsat Building a strong future(2).pdf:pdf},
isbn = {0034-4257},
issn = {00344257},
journal = {Remote Sensing of Environment},
keywords = {Climate data records,Earth observation,Land imaging future,Landsat,Remote sensing},
number = {October 2000},
pages = {22--29},
publisher = {Elsevier B.V.},
title = {{Landsat: Building a strong future}},
url = {http://dx.doi.org/10.1016/j.rse.2011.09.022},
volume = {122},
year = {2012}
}
@article{Pekel2016,
abstract = {The location and persistence of surface water (inland and coastal) is both affected by climate and human activity1 and affects climate2, 3, biological diversity4 and human wellbeing5, 6. Global data sets documenting surface water location and seasonality have been produced from inventories and national descriptions7, statistical extrapolation of regional data8 and satellite imagery9, 10, 11, 12, but measuring long-term changes at high resolution remains a challenge. Here, using three million Landsat satellite images13, we quantify changes in global surface water over the past 32 years at 30-metre resolution. We record the months and years when water was present, where occurrence changed and what form changes took in terms of seasonality and persistence. Between 1984 and 2015 permanent surface water has disappeared from an area of almost 90,000 square kilometres, roughly equivalent to that of Lake Superior, though new permanent bodies of surface water covering 184,000 square kilometres have formed elsewhere. All continental regions show a net increase in permanent water, except Oceania, which has a fractional (one per cent) net loss. Much of the increase is from reservoir filling, although climate change14 is also implicated. Loss is more geographically concentrated than gain. Over 70 per cent of global net permanent water loss occurred in the Middle East and Central Asia, linked to drought and human actions including river diversion or damming and unregulated withdrawal15, 16. Losses in Australia17 and the USA18 linked to long-term droughts are also evident. This globally consistent, validated data set shows that impacts of climate change and climate oscillations on surface water occurrence can be measured and that evidence can be gathered to show how surface water is altered by human activities. We anticipate that this freely available data will improve the modelling of surface forcing, provide evidence of state and change in wetland ecotones (the transition areas between biomes), and inform water-management decision-making.},
author = {Pekel, Jean-Fran{\c{c}}ois and Cottam, Andrew and Gorelick, Noel and Belward, Alan S.},
doi = {10.1038/nature20584},
file = {:C$\backslash$:/Users/mrvr/AppData/Local/Mendeley Ltd./Mendeley Desktop/Downloaded/Pekel et al. - 2016 - High-resolution mapping of global surface water and its long-term changes(2).pdf:pdf},
isbn = {6720052547653},
issn = {0028-0836},
journal = {Nature},
number = {7633},
pages = {418--422},
pmid = {27926733},
publisher = {Nature Publishing Group},
title = {{High-resolution mapping of global surface water and its long-term changes}},
url = {http://www.nature.com/doifinder/10.1038/nature20584},
volume = {540},
year = {2016}
}
@article{Spyrakos2017a,
annote = {From Duplicate 2 (Optical types of inland and coastal waters - Spyrakos, Evangelos; O'Donnell, Ruth; Hunter, Peter D.; Miller, Claire; Scott, Marian; Simis, Stefan G. H.; Neil, Claire; Barbosa, Claudio C. F.; Binding, Caren E.; Bradt, Shane; Bresciani, Mariano; Dall'Olmo, Giorgio; Giardino, Claudia; Gitelson, Anatoly A.; Kutser, Tiit; Li, Lin; Matsushita, Bunkei; Martinez-Vicente, Victor; Matthews, Mark W.; Ogashawara, Igor; Ruiz-Verd{\'{u}}, Antonio; Schalles, John F.; Tebbs, Emma; Zhang, Yunlin; Tyler, Andrew N.)
Spyrakos, E., O'Donnell, R., Hunter, P. D., Miller, C., Scott, M., Simis, S. G. H., {\ldots} Tyler, A. N. (2017). Optical types of inland and coastal waters. Limnology and Oceanography. https://doi.org/10.1002/lno.10674},
author = {Spyrakos, Evangelos and O'Donnell, Ruth and Hunter, Peter D. and Miller, Claire and Scott, Marian and Simis, Stefan G. H. and Neil, Claire and Barbosa, Claudio C. F. and Binding, Caren E. and Bradt, Shane and Bresciani, Mariano and Dall'Olmo, Giorgio and Giardino, Claudia and Gitelson, Anatoly A. and Kutser, Tiit and Li, Lin and Matsushita, Bunkei and Martinez-Vicente, Victor and Matthews, Mark W. and Ogashawara, Igor and Ruiz-Verd{\'{u}}, Antonio and Schalles, John F. and Tebbs, Emma and Zhang, Yunlin and Tyler, Andrew N.},
doi = {10.1002/lno.10674},
file = {:C$\backslash$:/Users/mrvr/AppData/Local/Mendeley Ltd./Mendeley Desktop/Downloaded/Spyrakos et al. - 2017 - Optical types of inland and coastal waters(2).pdf:pdf},
issn = {00243590},
journal = {Limnology and Oceanography},
title = {{Optical types of inland and coastal waters}},
url = {http://doi.wiley.com/10.1002/lno.10674},
year = {2017}
}
@article{Fichot2016,
abstract = {The San Francisco Bay-Delta Estuary watershed is a major source of freshwater for California and a profoundly human-impacted environment. The water quality monitoring that is critical to the management of this important water resource and ecosystem relies primarily on a system of fixed water-quality monitoring stations, but the limited spatial coverage often hinders understanding. Here, we show how the latest technology in visible/near-infrared imaging spectroscopy can facilitate water quality monitoring in this highly dynamic and heterogeneous system by enabling simultaneous depictions of several water quality indicators at very high spatial resolution. The airborne portable remote imaging spectrometer (PRISM) was used to derive high-spatial-resolution (2.6 × 2.6 m) distributions of turbidity, and dissolved organic carbon (DOC) and chlorophyll-a concentrations in a wetland-influenced region of this estuary. A filter-passing methylmercury vs DOC relationship was also developed using in situ samples and enabled the high-spatial-resolution depiction of surface methylmercury concentrations in this area. The results illustrate how high-resolution imaging spectroscopy can inform management and policy development in important inland and estuarine water bodies by facilitating the detection of point- and nonpoint-source pollution, and by providing data to help assess the complex impacts of wetland restoration and climate change on water quality and ecosystem productivity.},
annote = {From Duplicate 2 (High-Resolution Remote Sensing of Water Quality in the San Francisco Bay-Delta Estuary - Fichot, C{\'{e}}dric G.; Downing, Bryan D.; Bergamaschi, Brian A.; Windham-Myers, Lisamarie; Marvin-Dipasquale, Mark; Thompson, David R.; Gierach, Michelle M.)
No error metrics reported? A little weird for an otherwise cool study.},
author = {Fichot, C{\'{e}}dric G. and Downing, Bryan D. and Bergamaschi, Brian A. and Windham-Myers, Lisamarie and Marvin-Dipasquale, Mark and Thompson, David R. and Gierach, Michelle M.},
doi = {10.1021/acs.est.5b03518},
file = {:C$\backslash$:/Users/mrvr/AppData/Local/Mendeley Ltd./Mendeley Desktop/Downloaded/Fichot et al. - 2016 - High-Resolution Remote Sensing of Water Quality in the San Francisco Bay-Delta Estuary(2).pdf:pdf},
isbn = {0013-936X},
issn = {15205851},
journal = {Environmental Science and Technology},
number = {2},
pages = {573--583},
pmid = {26651265},
title = {{High-Resolution Remote Sensing of Water Quality in the San Francisco Bay-Delta Estuary}},
volume = {50},
year = {2016}
}
@article{Maul1975,
abstract = {Observations of the Gulf Stream System in the Gulf of Mexico were obtained in synchronization with LANDSAT-1. Computer enhanced images, which are necessary to extract useful oceanic information, show that the current can be observed by color (diffuse radiance) or sea state (specular radiance) effects associated with the cyclonic boundary even in the absence of a surface thermal signature. The color effect relates to the spectral variations in the optical properties of the water and its suspended particles, and is studied by radiative transfer theory. Significant oceanic parameters identified are: the probability of forward scattering, and the ratio of scattering to total attenuation. Several spectra of upwelling diffuse light are computed as a function of the concentration of particles and yellow substance. These calculations compare favorably with experimental measurements and show that the ratio of channels method gives ambiguous interpretative results. The results are used to discuss features in images where surface measurements were obtained and are extended to tentative explanation in others. {\textcopyright} 1976.},
author = {Maul, George A. and Gordon, Howard R.},
doi = {10.1016/0034-4257(75)90008-5},
file = {:C$\backslash$:/Users/mrvr/AppData/Local/Mendeley Ltd./Mendeley Desktop/Downloaded/Maul, Gordon - 1975 - On the Use of the Earth Resources Technology Satellite ( LANDSAT-1 ) in Optical Oceanography(2).pdf:pdf},
isbn = {0034-4257},
issn = {00344257},
journal = {Remote Sensing of Environment},
number = {C},
pages = {95--128},
title = {{On the Use of the Earth Resources Technology Satellite ( LANDSAT-1 ) in Optical Oceanography}},
volume = {4},
year = {1975}
}
@article{Storey2005,
abstract = {The Landsat 7 Enhanced Thematic Mapper Plus (ETM+) scan line corrector (SLC) failed on May 31, 2003, causing the scanning pattern to exhibit wedge-shaped scan-to-scan gaps. The ETM+ has continued to acquire data with the SLC powered off, leading to images that are missing approximately 22 percent of the normal scene area. To improve the utility of the SLC-off data, the U.S. Geological Survey (USGS) developed new products that use the data from multiple ETM+ scenes to provide complete ground coverage. These gap-filled products were developed and deployed in two phases. The gaps in the Phase I products are filled with data from imagery collected previously with a functional SLC (SLC-on). A single SLC-on scene provides complete coverage of the scan gaps, making the gap- filling procedure straightforward. Several radiometric adjustment techniques for matching the SLC-on fill scene to the SLC-off primary scene were evaluated for performance, processing speed, and ease of implementation. A simple local histogram matching method was adopted as a result of this evaluation. The Phase II products use data from multiple SLC-off scenes to fill the scan gaps with more recent data. Because the locations of the scan gaps are different for each SLC-off scene, the gap-filling process must account for scan gap interactions. The Phase II product development included a more comprehensive study of candidate radiometric adjustment techniques. This study showed that the histogram matching method used in Phase I, with minor refinements, provided the best overall performance and was adopted for Phase II as well.},
author = {Storey, J and Scaramuzza, P and Schmidt, G and Barsi, J},
file = {:C$\backslash$:/Users/mrvr/AppData/Local/Mendeley Ltd./Mendeley Desktop/Downloaded/Storey et al. - 2005 - Landsat 7 scan line corrector-off gap filled product development.pdf:pdf},
journal = {PECORA 16 Conference Proceedings, Sioux Falls, South Dakota},
pages = {23--27},
title = {{Landsat 7 scan line corrector-off gap filled product development}},
url = {http://www.asprs.org/a/publications/proceedings/pecora16/Storey{\_}J.pdf},
year = {2005}
}
@article{Feldman1979,
author = {Feldman, Stuart I},
doi = {10.1002/spe.4380090402},
issn = {00380644},
journal = {Software: Practice and Experience},
month = {apr},
number = {4},
pages = {255--265},
title = {{Make — a program for maintaining computer programs}},
url = {http://doi.wiley.com/10.1002/spe.4380090402},
volume = {9},
year = {1979}
}
@article{Gorelick2017,
author = {Gorelick, Noel and Hancher, Matt and Dixon, Mike and Ilyushchenko, Simon and Thau, David and Moore, Rebecca},
doi = {10.1016/j.rse.2017.06.031},
issn = {00344257},
journal = {Remote Sensing of Environment},
month = {dec},
pages = {18--27},
title = {{Google Earth Engine: Planetary-scale geospatial analysis for everyone}},
url = {https://linkinghub.elsevier.com/retrieve/pii/S0034425717302900},
volume = {202},
year = {2017}
}
@article{Sprague2017,
abstract = {Combining water-quality data from multiple sources can help counterbalance diminishing resources for stream monitoring in the United States and lead to important regional and national insights that would not otherwise be possible. Individual monitoring organizations understand their own data very well, but issues can arise when their data are combined with data from other organizations that have used different methods for reporting the same common metadata elements. Such use of multi-source data is termed “secondary use”—the use of data beyond the original intent determined by the organization that collected the data. In this study, we surveyed more than 25 million nutrient records collected by 488 organizations in the United States since 1899 to identify major inconsistencies in metadata elements that limit the secondary use of multi-source data. Nearly 14.5 million of these records had missing or ambiguous information for one or more key metadata elements, including (in decreasing order of records affected) sample fraction, chemical form, parameter name, units of measurement, precise numerical value, and remark codes. As a result, metadata harmonization to make secondary use of these multi-source data will be time consuming, expensive, and inexact. Different data users may make different assumptions about the same ambiguous data, potentially resulting in different conclusions about important environmental issues. The value of these ambiguous data is estimated at {\$}US12 billion, a substantial collective investment by water-resource organizations in the United States. By comparison, the value of unambiguous data is estimated at {\$}US8.2 billion. The ambiguous data could be preserved for uses beyond the original intent by developing and implementing standardized metadata practices for future and legacy water-quality data throughout the United States.},
author = {Sprague, Lori A. and Oelsner, Gretchen P. and Argue, Denise M.},
doi = {10.1016/j.watres.2016.12.024},
isbn = {0043-1354},
issn = {18792448},
journal = {Water Research},
keywords = {Data,Metadata,Nutrients,Rivers,Water quality},
pages = {252--261},
publisher = {Elsevier Ltd},
title = {{Challenges with secondary use of multi-source water-quality data in the United States}},
url = {http://dx.doi.org/10.1016/j.watres.2016.12.024},
volume = {110},
year = {2017}
}
@article{Stets2012,
abstract = {Material exports by rivers, particularly carbon exports, provide insight to basin geology, weathering, and ecological processes within the basin. Accurate accounting of those exports is valuable to understanding present, past, and projected basin-wide changes in those processes. We calculated lateral export of inorganic and organic carbon (IC and OC) from rivers draining the conterminous United States using stream gaging and water quality data from more than 100 rivers. Approximately 90{\%} of land area and 80{\%} of water export were included, which enabled a continental-scale estimate using minor extrapolation. Total carbon export was 41-49 Tg C yr(-1). IC was {\textgreater}75{\%} of export and exceeded OC export in every region except the southeastern Atlantic seaboard. The 10 largest rivers, by discharge, accounted for 66{\%} of water export and carried 74 and 62{\%} of IC and OC export, respectively. Watershed carbon yield for the conterminous United States was 4.2 and 1.3 g C m(-2) yr(-1) for IC and OC, respectively. The dominance of IC export was unexpected but is consistent with geologic models suggesting high weathering rates in the continental United States due to the prevalence of easily weathered sedimentary rock.},
author = {Stets, Edward and Striegl, Robert},
doi = {10.5268/IW-2.4.510},
file = {:C$\backslash$:/Users/mrvr/AppData/Local/Mendeley Ltd./Mendeley Desktop/Downloaded/Stets, Strieg - 2012 - Carbon export by rivers draining the conterminous united states.pdf:pdf},
isbn = {2044-2041},
issn = {20442041},
journal = {Inland Waters},
keywords = {Biogeochemistry,Carbon cycle,Inorganic carbon,Load estimation,Organic carbon,Rivers},
month = {oct},
number = {4},
pages = {177--184},
title = {{Carbon export by rivers draining the conterminous United States}},
url = {http://www.tandfonline.com/doi/full/10.5268/IW-2.4.510},
volume = {2},
year = {2012}
}
@article{Gholizadeh2016,
abstract = {Remotely sensed data can reinforce the abilities of water resources researchers and decision makers to monitor waterbodies more effectively. Remote sensing techniques have been widely used to measure the qualitative parameters of waterbodies (i.e., suspended sediments, colored dissolved organic matter (CDOM), chlorophyll-a, and pollutants). A large number of different sensors on board various satellites and other platforms, such as airplanes, are currently used to measure the amount of radiation at different wavelengths reflected from the water's surface. In this review paper, various properties (spectral, spatial and temporal, etc.) of the more commonly employed spaceborne and airborne sensors are tabulated to be used as a sensor selection guide. Furthermore, this paper investigates the commonly used approaches and sensors employed in evaluating and quantifying the eleven water quality parameters. The parameters include: chlorophyll-a (chl-a), colored dissolved organic matters (CDOM), Secchi disk depth (SDD), turbidity, total suspended sediments (TSS), water temperature (WT), total phosphorus (TP), sea surface salinity (SSS), dissolved oxygen (DO), biochemical oxygen demand (BOD) and chemical oxygen demand (COD).},
author = {Gholizadeh, Mohammad and Melesse, Assefa and Reddi, Lakshmi},
doi = {10.3390/s16081298},
file = {:C$\backslash$:/Users/mrvr/AppData/Local/Mendeley Ltd./Mendeley Desktop/Downloaded/Gholizadeh, Melesse, Reddi - 2016 - A Comprehensive Review on Water Quality Parameters Estimation Using Remote Sensing Techniques.pdf:pdf},
isbn = {10.3390/s16081298},
issn = {1424-8220},
journal = {Sensors},
keywords = {airborne sensors,remote sensing,spaceborne sensors,water quality indicators},
number = {8},
pages = {1298},
pmid = {27537896},
title = {{A Comprehensive Review on Water Quality Parameters Estimation Using Remote Sensing Techniques}},
url = {http://www.mdpi.com/1424-8220/16/8/1298},
volume = {16},
year = {2016}
}
@misc{Torbick2013,
abstract = {The number, size, and distribution of inland freshwater lakes present a challenge for traditional water-quality assessment due to the time, cost, and logistical constraints of field sampling and laboratory analyses. To overcome this challenge, Landsat imagery has been used as an effective tool to assess basic water-quality indicators, such as Secchi depth (SD), over a large region or to map more advanced lake attributes, such as cyanobacteria, for a single waterbody. The overarching objective of this research application was to evaluate Landsat Thematic Mapper (TM) for mapping nine water-quality metrics over a large region and to identify hot spots of potential risk. The second objective was to evaluate the addition of landscape pattern metrics to test potential improvements in mapping lake attributes and to understand drivers of lake water quality in this region. Field-level in situ water-quality measurements were collected across diverse lakes (n = 42) within the Lower Peninsula of Michigan. A multicriteria statistical approach was executed to map lake water quality that considered variable importance, model complexity, and uncertainty. Overall, band ratio radiance models performed well (R},
annote = {42 in-situ samples collected over a 3 month period used to calibrate models (date?) with landsat scenes from April 1 to September 21 mosaicked into 'early autumn' ({\~{}}September) and 'Spring' ({\~{}}May) images.
Landscape level variables including watershed composition (cropland, urban, and wetland) included at HUC 12 scale. All pulled from the National Land cover database
-90 meter buffer applied to reduce mixed pixels and subsequent average taken
- Statistics: Stepwise linear regression w/ branch and bound appraoch. {\textless}- Correlation Matrix {\textless}- Strategic linear regression
-Follow up Morans I spatial autocorrelation and LISA (local indicators of spatial autocorrelation)
-A little confusing, they compare a bunch of atm. corrections but utlimately just use TOA because of simplicity despite other corrections resutling in more predictive models
- All modeling was empirical
-Landscape level matrics, specifically percent cropland, wetland, and urban improved SD, TP, and Chl-a models.
-Waterbody classification done by trophic state using a Trophic State Index (TSI). Waterbodies showed significant clustering with higher variability around urban areas.},
author = {Torbick, Nathan and Hession, Sarah and Hagen, Stephen and Wiangwang, Narumon and Becker, Brian and Qi, Jiaguo},
booktitle = {International Journal of Remote Sensing},
doi = {10.1080/01431161.2013.822602},
file = {:C$\backslash$:/Users/mrvr/AppData/Local/Mendeley Ltd./Mendeley Desktop/Downloaded/Torbick et al. - 2013 - Mapping inland lake water quality across the Lower Peninsula of Michigan using Landsat TM imagery.pdf:pdf},
isbn = {01431161},
issn = {01431161},
number = {21},
pages = {7607--7624},
title = {{Mapping inland lake water quality across the Lower Peninsula of Michigan using Landsat TM imagery}},
volume = {34},
year = {2013}
}
@article{Butman2016,
abstract = {Inland water ecosystems dynamically process, transport, and sequester carbon. However, the transport of carbon through aquatic environments has not been quantitatively integrated in the context of terrestrial ecosystems. Here, we present the first integrated assessment, to our knowledge, of freshwater carbon fluxes for the conterminous United States, where 106 (range: 71–149) teragrams of carbon per year (TgC⋅y−1) is exported downstream or emitted to the atmosphere and sedimentation stores 21 (range: 9–65) TgC⋅y−1 in lakes and reservoirs. We show that there is significant regional variation in aquatic carbon flux, but verify that emission across stream and river surfaces represents the dominant flux at 69 (range: 36–110) TgC⋅y−1 or 65{\%} of the total aquatic carbon flux for the conterminous United States. Comparing our results with the output of a suite of terrestrial biosphere models (TBMs), we suggest that within the current modeling framework, calculations of net ecosystem production (NEP) defined as terrestrial only may be overestimated by as much as 27{\%}. However, the internal production and mineralization of carbon in freshwaters remain to be quantified and would reduce the effect of including aquatic carbon fluxes within calculations of terrestrial NEP. Reconciliation of carbon mass–flux interactions between terrestrial and aquatic carbon sources and sinks will require significant additional research and modeling capacity.},
author = {Butman, David and Stackpoole, Sarah and Stets, Edward and McDonald, Cory P. and Clow, David W. and Striegl, Robert G.},
doi = {10.1073/pnas.1512651112},
file = {:C$\backslash$:/Users/mrvr/AppData/Local/Mendeley Ltd./Mendeley Desktop/Downloaded/Butman et al. - 2016 - Aquatic carbon cycling in the conterminous United States and implications for terrestrial carbon accounting.pdf:pdf},
isbn = {0027-8424, 1091-6490},
issn = {0027-8424},
journal = {Proceedings of the National Academy of Sciences},
number = {1},
pages = {58--63},
pmid = {26699473},
title = {{Aquatic carbon cycling in the conterminous United States and implications for terrestrial carbon accounting}},
url = {http://www.pnas.org/lookup/doi/10.1073/pnas.1512651112 http://www.pnas.org/content/113/1/58{\%}5Cnhttp://www.ncbi.nlm.nih.gov/pubmed/26699473{\%}5Cnhttp://www.pnas.org/content/113/1/58.full.pdf{\%}5Cnhttp://www.pnas.org/content/113/1/58.short{\%}5Cnhttp://www.pnas.or},
volume = {113},
year = {2016}
}
@article{Wickham2014,
abstract = {In this paper we present the R package gRain for propagation in graphical indepen- dence networks (for which Bayesian networks is a special instance). The paper includes a description of the theory behind the computations. The main part of the paper is an illustration of how to use the package. The paper also illustrates how to turn a graphical model and data into an independence network.},
archivePrefix = {arXiv},
arxivId = {arXiv:1501.0228},
author = {Wickham, Hadley},
doi = {10.18637/jss.v059.i10},
eprint = {arXiv:1501.0228},
file = {:C$\backslash$:/Users/mrvr/AppData/Local/Mendeley Ltd./Mendeley Desktop/Downloaded/Wickham - 2014 - Tidy Data.pdf:pdf},
isbn = {9780387781662},
issn = {1548-7660},
journal = {Journal of Statistical Software},
keywords = {R,data cleaning,data tidying,r,relational databases},
number = {10},
pmid = {18291371},
title = {{Tidy Data}},
url = {http://www.jstatsoft.org/ http://www.jstatsoft.org/v59/i10/},
volume = {59},
year = {2014}
}
@article{Syvitski2011,
abstract = {Data and computer simulations are reviewed to help better define the timing and magnitude of human influence on sediment flux--the Anthropocene epoch. Impacts on the Earth surface processes are not spatially or temporally homogeneous. Human influences on this sediment flux have a secondary effect on floodplain and delta-plain functions and sediment dispersal into the coastal ocean. Human impact on sediment production began 3000 years ago but accelerated more widely 1000 years ago. By the sixteenth century, societies were already engineering their environment. Early twentieth century mechanization has led to global signals of increased sediment flux in most large rivers. By the 1950s, this sediment disturbance signal reversed for many rivers owing to the proliferation of dams, and sediment load reduction below pristine conditions is the dominant signal today. A delta subsidence signal began in the 1930s and is now a dominant signal in terms of sea level for many coastal environments, overwhelming even the global warming imprint on sea level. Humans have engineered how most water and sediment are discharged into the coastal ocean. Hyperpycnal flow events have become more common for some rivers, and less common for other rivers. Bottom trawling is now widespread, suggesting that even continental shelves have received a significant but as yet quantified Anthropocene impact. The Anthropocene attains the level of a geological climate event, such as that seen in the transition between the Pleistocene and the Holocene.},
author = {Syvitski, James P M and Kettner, Albert},
doi = {10.1098/rsta.2010.0329},
file = {:C$\backslash$:/Users/mrvr/AppData/Local/Mendeley Ltd./Mendeley Desktop/Downloaded/Syvitski, Kettner - 2011 - Sediment flux and the Anthropocene.pdf:pdf},
issn = {1364-503X},
journal = {Philosophical transactions. Series A, Mathematical, physical, and engineering sciences},
month = {mar},
number = {1938},
pages = {957--75},
pmid = {21282156},
title = {{Sediment flux and the Anthropocene.}},
url = {http://www.ncbi.nlm.nih.gov/pubmed/21282156},
volume = {369},
year = {2011}
}
@article{Griffin2011,
abstract = {The Kolyma River basin in northeastern Siberia, the sixth largest river basin draining to the Arctic Ocean, contains vast reserves of carbon in Pleistocene!aged permafrost soils. Permafrost degradation, as a result of climate change, may cause shifts in riverine biogeochemistry as this old source of organic matter is exposed. Satellite remote sensing offers an opportunity to complement and extrapolate field sampling of dissolved organic matter in this expansive and remote region. We develop empirically based algorithms that estimate chromophoric dissolved organic matter (CDOM) and dissolved organic carbon (DOC) in the Kolyma River and its major tributaries in the vicinity of Cherskiy, Russia. Field samples from July 2008 and 2009 were regressed against spectral data from the Landsat 5 Thematic Mapper and Landsat 7 Enhanced Thematic Mapper!Plus. A combination of Landsat band 3 and bands 2:1 resulted in an R2 of 0.78 between measured CDOM and satellite!derived predictions. Owing to the strong correlation between CDOM and DOC, the resulting maps of the region show strong interannual variability of both CDOM and DOC, and important spatial patterns such as mixing zones at river confluences and downstream loading of DOC. Such variability was previously unobserved through field!based point observations and suggests that current calculations of DOC flux from the Kolyma River to the Arctic Ocean may be underestimates. In this era of rapid climate change, permafrost degradation, and shifts in river discharge, remote sensing of CDOM and DOC offers a powerful, reliable tool to enhance our understanding of carbon cycling in major arctic river systems. Citation: Griffin, C. G., K. E. Frey, J. Rogan, and R. M. Holmes (2011), Spatial and interannual variability of dissolved organic matter in the Kolyma River, East Siberia, observed using satellite imagery, J. Geophys. Res., 116, G03018,},
author = {Griffin, Claire G. and Frey, Karen E. and Rogan, John and Holmes, Robert M.},
doi = {10.1029/2010JG001634},
file = {:C$\backslash$:/Users/mrvr/AppData/Local/Mendeley Ltd./Mendeley Desktop/Downloaded/Griffin et al. - 2011 - Spatial and interannual variability of dissolved organic matter in the Kolyma River, East Siberia, observed u(2).pdf:pdf},
isbn = {0148-0227},
issn = {01480227},
journal = {Journal of Geophysical Research: Biogeosciences},
keywords = {doi:10.102,http://dx.doi.org/10.1029/2010JG001634},
number = {3},
pages = {1--12},
title = {{Spatial and interannual variability of dissolved organic matter in the Kolyma River, East Siberia, observed using satellite imagery}},
volume = {116},
year = {2011}
}
@article{Griffin2018,
abstract = {Colored dissolved organic matter (CDOM) has been widely studied as part of efforts to improve understanding of the aquatic carbon cycle, by laboratory, in situ, and remote sensing methods. We studied ecoregion-scale differences in CDOM and dissolved organic carbon (DOC) to understand variability in organic matter composition and the use of CDOM as a proxy for DOC. Data from 299 lakes across the U.S. Upper Midwest showed that CDOM, measured as absorptivity at 440 nm (a440), correlated strongly with DOC (R2 = 0.81, n = 412). Colored lakes in the Northern Lakes and Forests (NLF) ecoregion drove this relationship. Lakes in the North Central Hardwood Forests (NCHF) had low color (most had a440 {\textless} 3 m−1) and weaker CDOM-DOC relationships (R2 = 0.47). Spectral slopes and specific ultraviolet absorbance (SUVA), indicated relatively low aromaticity and non-terrestrial DOM sources in low color lakes. Multiple regression analyses that included total dissolved nitrogen (TDN) and CDOM, but not chlorophyll a, improved DOC estimates in low color lakes, suggesting a dominant contribution of non-planktonic sources of low color DOM in these lakes. Our results show that CDOM is a reliable, regional proxy for DOC in lakes where forests and wetlands dominate the landscape and the DOM is primarily terrestrial in origin. Mapping of lake DOC at broad spatial scales by satellite-derived CDOM has lower accuracy in low color lakes.},
author = {Griffin, Claire G. and Finlay, Jacques C. and Brezonik, Patrick L. and Olmanson, Leif and Hozalski, Raymond M.},
doi = {10.1016/J.WATRES.2018.08.007},
file = {:C$\backslash$:/Users/mrvr/AppData/Local/Mendeley Ltd./Mendeley Desktop/Downloaded/Griffin et al. - 2018 - Limitations on using CDOM as a proxy for DOC in temperate lakes.pdf:pdf},
issn = {0043-1354},
journal = {Water Research},
month = {nov},
pages = {719--727},
publisher = {Pergamon},
title = {{Limitations on using CDOM as a proxy for DOC in temperate lakes}},
url = {https://www.sciencedirect.com/science/article/pii/S0043135418306286},
volume = {144},
year = {2018}
}
@article{Olmanson2008b,
abstract = {A 20-year comprehensive water clarity database assembled from Landsat imagery, primarily Thematic Mapper and Enhanced Thematic Mapper Plus, for Minnesota lakes larger than 8 ha in surface area contains data on more than 10,500 lakes at five-year intervals over the period 1985-2005. The reliability of the data was evaluated by examining the precision of repeated measurements on individual lakes within short time periods using data from adjacent overlapping Landsat paths and by comparing water clarity computed from Landsat data to field-collected Secchi depth data. The agreement between satellite data and field measurements of Secchi depth within Landsat paths was strong (average R2 of 0.83 and range 0.71-0.96). Relationships between late-summer Landsat and field-measured Secchi depth for the combined statewide data similarly were strong (r2 of 0.77-0.80 for individual time periods and r2 = 0.78 for the entire database). Lake clarity has strong geographic patterns in Minnesota; lakes in the south and southwest have low clarity, and lakes in the north and northeast tend to have the highest clarity. This pattern is evident at both the individual lake and the ecoregion level. Mean water clarity in the Northern Lakes and Forest and North Central Hardwood Forest ecoregions in central and northern Minnesota remained stable from 1985 to 2005 while decreasing water clarity trends were detected in the Western Corn Belt Plains and Northern Glaciated Plains ecoregions in southern Minnesota, where agriculture is the predominant land use. Mean water clarity at the statewide level also remained stable with an average around 2.25 m from 1985 to 2005. This assessment demonstrates that satellite imagery can provide an accurate method for obtaining comprehensive spatial and temporal coverage of key water quality characteristics that can be used to detect trends at different geographic scales. {\textcopyright} 2008 Elsevier Inc. All rights reserved.},
annote = {From Duplicate 1 (A 20-year Landsat water clarity census of Minnesota's 10,000 lakes - Olmanson, Leif G.; Bauer, Marvin E.; Brezonik, Patrick L.)
Water Clarity Studies!
Kloiber et al 2002a/b
Olmanson et al 2001/2002
Chipman et al 2004
Baker et al 2004
Covers 10,500 lakes in Minnesota at five year intervals.
Only used images from late summer (July-Sept) because (1) short-term variability in lake water clarity is at a seasonal minimum, and (2) most lakes have their minimum water clarity during this period
10 day overlap window},
author = {Olmanson, Leif G. and Bauer, Marvin E. and Brezonik, Patrick L.},
doi = {10.1016/j.rse.2007.12.013},
file = {:C$\backslash$:/Users/mrvr/AppData/Local/Mendeley Ltd./Mendeley Desktop/Downloaded/Olmanson, Bauer, Brezonik - 2008 - A 20-year Landsat water clarity census of Minnesota's 10,000 lakes(2).pdf:pdf},
isbn = {0034-4257},
issn = {00344257},
journal = {Remote Sensing of Environment},
keywords = {Ecoregion,Landsat,Minnesota,Regional,Remote sensing,Secchi depth transparency,Trophic-state index,Water clarity,Water clarity trends,Water quality},
number = {11},
pages = {4086--4097},
title = {{A 20-year Landsat water clarity census of Minnesota's 10,000 lakes}},
volume = {112},
year = {2008}
}
@article{Blondeau-Patissier2014,
abstract = {The need for more effective environmental monitoring of the open and coastal ocean has recently led to notable advances in satellite ocean color technology and algorithm research. Satellite ocean color sensors' data are widely used for the detection, mapping and monitoring of phytoplankton blooms because earth observation provides a synoptic view of the ocean, both spatially and temporally. Algal blooms are indicators of marine ecosystem health; thus, their monitoring is a key component of effective management of coastal and oceanic resources. Since the late 1970s, a wide variety of operational ocean color satellite sensors and algorithms have been developed. The comprehensive review presented in this article captures the details of the progress and discusses the advantages and limitations of the algorithms used with the multi-spectral ocean color sensors CZCS, SeaWiFS, MODIS and MERIS. Present challenges include overcoming the severe limitation of these algorithms in coastal waters and refining detection limits in various oceanic and coastal environments. To understand the spatio-temporal patterns of algal blooms and their triggering factors, it is essential to consider the possible effects of environmental parameters, such as water temperature, turbidity, solar radiation and bathymetry. Hence, this review will also discuss the use of statistical techniques and additional datasets derived from ecosystem models or other satellite sensors to characterize further the factors triggering or limiting the development of algal blooms in coastal and open ocean waters. {\textcopyright} 2014.},
author = {Blondeau-Patissier, David and Gower, James F.R. and Dekker, Arnold G. and Phinn, Stuart R. and Brando, Vittorio E.},
doi = {10.1016/j.pocean.2013.12.008},
file = {:C$\backslash$:/Users/mrvr/AppData/Local/Mendeley Ltd./Mendeley Desktop/Downloaded/Blondeau-Patissier et al. - 2014 - A review of ocean color remote sensing methods and statistical techniques for the detection, mappi(2).pdf:pdf},
isbn = {00796611},
issn = {00796611},
journal = {Progress in Oceanography},
pages = {23--144},
publisher = {Elsevier Ltd},
title = {{A review of ocean color remote sensing methods and statistical techniques for the detection, mapping and analysis of phytoplankton blooms in coastal and open oceans}},
url = {http://dx.doi.org/10.1016/j.pocean.2013.12.008},
volume = {123},
year = {2014}
}
@article{Bricaud1981,
abstract = {Spectral values of absorption of light by dissolved organic matter were measured in samples originating from diverse parts of the ocean, quite different with respect to pigment and par-ticle content. The use of llO-cm cells and then of lo-cm cells, with a highly sensitive spec-trophotometer, allowed measurement throughout the UV-visible range (200-700 nm) even for the low concentrations of yellow substance encountered in the open sea. The concentra-tion appears influenced predominantly by natural and industrial land discharges. In oceanic waters, it remains low and seems to be related to the biological activity averaged over a long period rather than to the local and temporary phytoplankton content. However, even at such low concentrations, yellow substance in the open sea may have an effect on absorption and hence on ocean color similar to that of low or moderate algal biomass. The spectral depen-dence law of absorption appears to vary within a restricted range, and an average law can be considered representative of rapid measurements at one selected wavelength. The increasing absorption of light by filtered natural waters with decreasing wavelength is well known. The dissolved and colloidal organic compounds present in natural waters and responsible for this absorption were collectively called " Gelbstoff' by Kalle (1938), i.e. yellow substance, and more recently " Gilvin " (Kirk 1976). This substance has been subjected to many investigations to determine its ori-gin and chemical composition. Most ab-sorption measurements have been re-stricted to the UV part of the spectrum, where absorption is much higher than in the visible part. However, yellow sub-stance (y .s.), in addition to pigments and nonliving material, is one of the factors determining the shape of the total ab-sorption spectrum in the visible range, and thus causes variations in ocean color (Morel and P rieur 1977). To study the effect of this substance on the optical properties of seawater, for instance for remote sensing applications, we must know its spectral absorption coefficients throughout the visible range. These},
author = {Bricaud, Annick and Morel, Andre and Prieur, Louis},
doi = {10.4319/lo.1981.26.1.0043},
file = {:C$\backslash$:/Users/mrvr/AppData/Local/Mendeley Ltd./Mendeley Desktop/Downloaded/Bricaud, Morel, Prieur - 1981 - Absorption by dissolved organic matter of the sea (yellow substance) in the UV and visible domains1(2).pdf:pdf},
isbn = {0024-3590},
issn = {00243590},
journal = {Limnology and Oceanography},
number = {1},
pages = {43--53},
title = {{Absorption by dissolved organic matter of the sea (yellow substance) in the UV and visible domains}},
url = {http://doi.wiley.com/10.4319/lo.1981.26.1.0043},
volume = {26},
year = {1981}
}
@article{Pavelsky2009,
abstract = {The transport of fine sediment, carried in suspension by water, is central to the hydrology, geomorphology, and ecological functioning of river floodplains and deltas. An extensive new field data set for the Peace-Athabasca Delta (PAD), Canada quantifies robust positive relationships between in situ suspended sediment concentration (SSC) and remotely sensed visible/near-infrared reflectance. These relationships are exploited using SPOT and ASTER satellite images to map suspended sediment concentrations across the PAD for four days in 2006 and 2007, revealing strong variations in water sources and flow patterns, including flow reversals in major distributaries. Near-daily monitoring with 276 MODIS satellite images tracks hydrologic recharge of floodplain lakes, as revealed by episodic infusions of sediment-rich water from the Athabasca River. The timing and magnitude of lake recharge are linked to springtime water level on the Athabasca River, suggesting a system sensitive to changes in river flow regime. Moreover, recharge timing differentiates lakes that are frequently and extensively recharged from those recharged more rarely. Finally, we present a first estimation of river flow velocity based on remotely sensed SSC, though saturation may occur at velocities {\textgreater}0.6 m/s. Viewed collectively, the different remote sensing methodologies presented here suggest strong value for visible/near-infrared remote sensing of suspended sediment to assess hydrologic and sediment transport processes in complex flow environments. Field observations including nephelometric turbidity, specific conductivity, water temperature, Secchi disk depth, suspended sediment concentration, and water level are archived at the Oak Ridge National Laboratory Distributed Active Archive Center for Biogeochemical Dynamics (available at http://daac.ornl.gov//HYDROCLIMATOLOGY/guides/PAD.html).},
author = {Pavelsky, Tamlin M. and Smith, Laurence C.},
doi = {10.1029/2008WR007424},
file = {:C$\backslash$:/Users/mrvr/AppData/Local/Mendeley Ltd./Mendeley Desktop/Downloaded/Pavelsky, Smith - 2009 - Remote sensing of suspended sediment concentration, flow velocity, and lake recharge in the Peace-Athabasca (2).pdf:pdf},
isbn = {1944-7973},
issn = {00431397},
journal = {Water Resources Research},
number = {11},
title = {{Remote sensing of suspended sediment concentration, flow velocity, and lake recharge in the Peace-Athabasca Delta, Canada}},
volume = {45},
year = {2009}
}
@article{Green2014,
author = {Green, Christopher T. and Bekins, Barbara A. and Kalkhoff, Stephen J. and Hirsch, Robert M. and Liao, Lixia and Barnes, Kimberlee K.},
doi = {10.1002/2013WR014829},
file = {:C$\backslash$:/Users/mrvr/AppData/Local/Mendeley Ltd./Mendeley Desktop/Downloaded/Green et al. - 2014 - Decadal surface water quality trends under variable climate, land use, and hydrogeochemical setting in Iowa, USA.pdf:pdf},
issn = {00431397},
journal = {Water Resources Research},
keywords = {nitrate,surface water quality,time series},
month = {mar},
number = {3},
pages = {2425--2443},
publisher = {John Wiley {\&} Sons, Ltd},
title = {{Decadal surface water quality trends under variable climate, land use, and hydrogeochemical setting in Iowa, USA}},
url = {http://doi.wiley.com/10.1002/2013WR014829},
volume = {50},
year = {2014}
}
@article{Bukata2013,
author = {Bukata, Robert P},
doi = {10.1016/j.jglr.2013.04.001},
file = {:C$\backslash$:/Users/mrvr/AppData/Local/Mendeley Ltd./Mendeley Desktop/Downloaded/Bukata - 2013 - Retrospection and introspection on remote sensing of inland water quality “ Like D{\'{e}}j{\`{a}} Vu All Over Again ”.pdf:pdf},
issn = {0380-1330},
journal = {Journal of Great Lakes Research},
keywords = {Dual solitudes,Limno-optics history,Water quality,limno-optics history},
pages = {2--5},
publisher = {Elsevier B.V.},
title = {{Retrospection and introspection on remote sensing of inland water quality : “ Like D{\'{e}}j{\`{a}} Vu All Over Again ”}},
url = {http://dx.doi.org/10.1016/j.jglr.2013.04.001},
volume = {39},
year = {2013}
}
@article{Julian2008,
abstract = {Optical water quality (OWQ) governs the quantity and quality of light in aquatic ecosystems, and thus spatiotemporal changes in OWQ affect many biotic and abiotic processes. Despite the fundamental role of light in rivers, studies on riverine OWQ have been limited and mostly descriptive. Here we provide a comprehensive, quantitative analysis of the controls and spatiotemporal dynamics of riverine OWQ, focusing on the inherent optical properties (IOPs), which are those that are only affected by water constituents and not by changes in the solar radiation field. First, we briefly review the constituents attenuating light in rivers. Second, we develop a new method for partitioning (light) beam attenuation into its constituent fractions. This method distinguishes between absorption and scattering by dissolved and particulate constituents, and further isolates particulates into mineral and organic components. Third, we compare base flow IOPs between four rivers with vastly different physical characteristics to illustrate intersite variability. Fourth, we analyze the spatial and temporal patterns of IOPs for the four rivers. Fifth, we quantify a longitudinal water clarity budget for one of the rivers. Finally, available data are synthesized to identify general spatial trends robust across broad geographic areas. Temporal trends in IOPs were largely dictated by storm frequency, while spatial trends were largely dictated by channel network configuration. Generally, water clarity decreased with increasing discharge primarily owing to greater scattering by particulates and secondarily to greater absorption by chromophoric dissolved organic matter. Water clarity also generally decreased longitudinally along the river owing to increased particulate inputs from tributaries; however, for pear-shaped, dendritic basins, water clarity reached a minimum at 70{\%} of the channel length and then increased. By illustrating the controls and spatiotemporal variability of riverine OWQ, these findings will be of interest to water resource managers and fluvial ecologists and specifically for remote-sensing of fluvial environments and river plumes in receiving waters.},
author = {Julian, J. P. and Doyle, M. W. and Powers, S. M. and Stanley, E. H. and Riggsbee, J. A.},