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14.py
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import sys
def extract_vertices(kmers, k):
vertex_set = {kmer[:k - 1] for kmer in kmers} | {kmer[1:] for kmer in kmers}
return {v: i for i, v in enumerate(vertex_set)}
def build_graph(kmers, k, vertices):
n = len(vertices)
edges = [[] for _ in range(n)]
for kmer in kmers:
fr = vertices[kmer[:k - 1]]
to = vertices[kmer[1:]]
edges[fr].append(to)
return edges
def find_max_nonbranching_paths(edges):
n = len(edges)
in_degs = [0 for _ in range(n)]
for out_edges in edges:
for v in out_edges:
in_degs[v] += 1
out_degs = [len(out_edges) for out_edges in edges]
nonbranching_paths = []
for v in range(n):
if in_degs[v] == 1 and out_degs[v] == 1:
continue
if out_degs[v] == 0:
continue
for to in edges[v]:
path = [v, to]
next = to
while in_degs[next] == 1 and out_degs[next] == 1:
next = edges[next][0]
path.append(next)
if len(path) == n: # cycle encountered
break
nonbranching_paths.append(path)
return nonbranching_paths
def main():
kmers = [line.strip() for line in sys.stdin.readlines()]
k = len(kmers[0])
vertices = extract_vertices(kmers, k)
descriptors = {i: v for v, i in vertices.items()}
edges = build_graph(kmers, k, vertices)
nonbranching_paths = find_max_nonbranching_paths(edges)
contigs = []
for path in nonbranching_paths:
contig = descriptors[path[0]] + ''.join([descriptors[v][-1] for v in path[1:]])
contigs.append(contig)
print(*contigs)
if __name__ == '__main__':
main()